TCONS_00000273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000273
Unique NameTCONS_00000273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=transcript|length=1381bp
CTTCGCTCGAATCCGGGAATTATGAATCGTCCCACTAATGAACTTTTGGC
GCTAATGAGATCACTTGCCGTTGTTGCTGTTGCCACTTGTGTCACCAGGA
CCGAGCTGATGAACATGACTTAACAGCGTGATGAACAATTTCGTATATTT
GCCTCTCGTGTCAGAGGAAAGGCAGTGACTTGTAATTATAAGACGAAATG
TACGTGCAATAACACTGTTGATTTCACGGATTCTATTATTAGAGATATTT
TGATAGCGGGTATTGTAGATTCTGATATTCGTCGAGAGATACAGGTGTGA
AAGACATACTAGATACACCTATCAATGACATTATCGCACTTGTTGAAAGC
AAGGAGATGGCACGCGATGCGCTTCCCCTGCCAGTTGGGAGTGTATCATC
CTCTTCCTATCGTCGCAACAGATCGAAACAAGTCGAAACACCTCAGACCG
ACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCCATTCCTGCGTTTCAGT
GAAGGTCGAAATGGTCGCAATAAGAAACCTCACAAGCTCTGCATCGAATG
TTACCGTATCCAACGTCGCCAAGATAAAACCAATTCCAATCCGCCGGCCA
AGCCAGACGCATCAAATACTGCCGGTGTTGGTACCATGTTTAGTCAAGTA
TCAGGAATCACCACTGCGAGATCAGATCCTACTTCTGTTGCCGACCAAAA
TGCAATTGCTTCACCTCACAGTATATTTACCAAGGGCCAGTGGCGGAAGT
CGAAGTTCAAAAATCACCCTAGGGGAGAACTCTTATTATCTGTTCTGTCA
TCTGATTATAAACAGTTCAGTAAAAGATGCCCTAACGTTGCTCCTACCAA
AATCACAGCACTGGCCGATACCGGTGCTCAGTCTTGTCTTTGGTCGCTGA
GAGAATTCGAGTCACTTGGCTTCacgaaaaatgatttgattccCGTTAAC
ATCAACCTCATGGCTGCAAACAAGTCACTCATAACCGTTGAAGGAGCTGC
TTGCGTTCTATTAGAGGGTGTCGCATCAGACGGCTCCAAGCAGTCCTGCT
CCACTATGGTTTATATCAGTCGGCAGGCACAGGGATTCTACCTTTCGCTG
GAGAACATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCTTAA
ACCGTTGTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTGATA
TCGATTCCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACCCGT
TCCAGAAATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAGAACAATG
ACAAGATGAAAAAGTGGATTCTAGAACATTTCGCTTCTTCCACTTTTAAC
ACCTGCCCTCATCAGACCCTCGAGAAAATAG
Run BLAST on NCBI

protein sequence of TCONS_00000273-protein

>TCONS_00000273-protein ID=TCONS_00000273-protein|Name=TCONS_00000273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MARDALPLPVGSVSSSSYRRNRSKQVETPQTDIPVPCPGCQKPFLRFSEG
RNGRNKKPHKLCIECYRIQRRQDKTNSNPPAKPDASNTAGVGTMFSQVSG
ITTARSDPTSVADQNAIASPHSIFTKGQWRKSKFKNHPRGELLLSVLSSD
YKQFSKRCPNVAPTKITALADTGAQSCLWSLREFESLGFTKNDLIPVNIN
LMAANKSLITVEGAACVLLEGVASDGSKQSCSTMVYISRQAQGFYLSLEN
MMELGIVPRDFPSLKPLSSIDQVGHTTSTVDIDSIKEKSCSCSYSHTRSR
NAQRVTVRLRA
Run BLAST on NCBI

transcript from alignment at sc0000001:2783390..2784823-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at sc0000001:2783390..2784823- (Clytia hemisphaerica)
CTTCGCTCGAATCCGGGAATTATGAATCGTCCCACTAATGAACTTTTGGC
GCTAATGAGATCACTTGCCGTTGTTGCTGTTGCCACTTGTGTCACCAGGA
CCGAGCTGATGAACATGACTTAACAGCGTGATGAACAATTTCGTATATTT
GCCTCTCGTGTCAGAGGAAAGGCAGTGACTTGTAATTATAAGACGAAATG
TACGTGCAATAACACTGTTGATTTCACGGATTCTATTATTAGAGATATTT
TGATAGCGGGTATTGTAGATTCTGATATTCGTCGAGAGATACAGGTGTGA
AAGACATACTAGATACACCTATCAATGACATTATCGCACTTGTTGAAAGC
AAGGAGATGGCACGCGATGCGCTTCCCCTGCCAGTTGGGAGTGTATCATC
CTCTTCCTATCGTCGCAACAGATCGAAACAAGTCGAAACACCTCAGACCG
ACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCCATTCCTGCGTTTCAGT
GAAGGTCGAAATGGTCGCAATAAGAAACCTCACAAGCTCTGCATCGAATG
TTACCGTATCCAACGTCGCCAAGATAAAACCAATTCCAATCCGCCGGCCA
AGCCAGACGCATCAAATACTGCCGGTGTTGGTACCATGTTTAGTCAAGTA
TCAGGAATCACCACTGCGAGATCAGATCCTACTTCTGTTGCCGACCAAAA
TGCAATTGCTTCACCTCACAGTATATTTACCAAGGGCCAGTGGCGGAAGT
CGAAGTTCAAAAATCACCCTAGGGGAGAACTCTTATTATCTGTTCTGTCA
TCTGATTATAAACAGTTCAGTAAAAGATGCCCTAACGTTGCTCCTACCAA
AATCACAGCACTGGCCGATACCGGTGCTCAGTCTTGTCTTTGGTCGCTGA
GAGAATTCGAGTCACTTGGCTTCACGAAAAATGATTTGATTCCCGTTAAC
ATCAACCTCATGGCTGCAAACAAGTCACTCATAACCGTTGAAGGAGCTGC
TTGCGTTCTATTAGAGGGTGTCGCATCAGACGGCTCCAAGCAGTCCTGCT
CCACTATGGTTTATATCAGTCGGCAGGCACAGGGATTCTACCTTTCGCTG
GAGAACATGATGGAACTGGGTATAGTCCCGAGAGNGGATTCTACCTTTCG
CTGGAGAACATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCT
TAAACCGTTGTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTG
ATATCGATTCCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACC
CGTTCCAGAAATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAGAACA
ATGACAAGATGAAAAAGTGGATTCTAGAACATTTCGCTTCTTCCACTTTT
AACACCTGCCCTCATCAGACCCTCGAGAAAATAG

Coding sequence (CDS) from alignment at sc0000001:2783390..2784823-

>TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000001:2783390..2784823- (Clytia hemisphaerica)
ATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCTTAAACCGTT
GTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTGATATCGATT
CCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACCCGTTCCAGA
AATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAATGGCACGCGATGC
GCTTCCCCTGCCAGTTGGGAGTGTATCATCCTCTTCCTATCGTCGCAACA
GATCGAAACAAGTCGAAACACCTCAGACCGACATTCCTGTTCCTTGCCCT
GGATGCCAGAAGCCATTCCTGCGTTTCAGTGAAGGTCGAAATGGTCGCAA
TAAGAAACCTCACAAGCTCTGCATCGAATGTTACCGTATCCAACGTCGCC
AAGATAAAACCAATTCCAATCCGCCGGCCAAGCCAGACGCATCAAATACT
GCCGGTGTTGGTACCATGTTTAGTCAAGTATCAGGAATCACCACTGCGAG
ATCAGATCCTACTTCTGTTGCCGACCAAAATGCAATTGCTTCACCTCACA
GTATATTTACCAAGGGCCAGTGGCGGAAGTCGAAGTTCAAAAATCACCCT
AGGGGAGAACTCTTATTATCTGTTCTGTCATCTGATTATAAACAGTTCAG
TAAAAGATGCCCTAACGTTGCTCCTACCAAAATCACAGCACTGGCCGATA
CCGGTGCTCAGTCTTGTCTTTGGTCGCTGAGAGAATTCGAGTCACTTGGC
TTCACGAAAAATGATTTGATTCCCGTTAACATCAACCTCATGGCTGCAAA
CAAGTCACTCATAACCGTTGAAGGAGCTGCTTGCGTTCTATTAGAGGGTG
TCGCATCAGACGGCTCCAAGCAGTCCTGCTCCACTATGGTTTATATCAGT
CGGCAGGCACAGGGATTCTACCTTTCGCTGGAGAACATGATGGAACTGGG
TATAGTTCCAAGAGACTTTCCTTCCCTTAAACCGTTGTCATCGATCGATC
AAGTTGGTCACACCACGAGCACCGTTGATATCGATTCCATCAAGGAAAAG
AGTTGCTCCTGCTCGTACTCGCACACCCGTTCCAGAAATGCCCAAAGAGT
TACCGTTCGATTGCGTGCCTGAATGGCACGCGATGCGCTTCCCCTGCCAG
TTGGGAGTGTATCATCCTCTTCCTATCGTCGCAACAGATCGAAACAAGTC
GAAACACCTCAGACCGACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCC
ATTCCTGCGTTTCAGTGAAGGTCGAAATGGTCGCAATAAGAAACCTCACA
AGCTCTGCATCGAATGTTACCGTATCCAACGTCGCCAAGATAAAACCAAT
TCCAATCCGCCGGCCAAGCCAGACGCATCAAATACTGCCGGTGTTGGTAC
CATGTTTAGTCAAGTATCAGGAATCACCACTGCGAGATCAGATCCTACTT
CTGTTGCCGACCAAAATGCAATTGCTTCACCTCACAGTATATTTACCAAG
GGCCAGTGGCGGAAGTCGAAGTTCAAAAATCACCCTAGGGGAGAACTCTT
ATTATCTGTTCTGTCATCTGATTATAAACAGTTCAGTAAAAGATGCCCTA
ACGTTGCTCCTACCAAAATCACAGCACTGGCCGATACCGGTGCTCAGTCT
TGTCTTTGGTCGCTGAGAGAATTCGAGTCACTTGGCTTCACGAAAAATGA
TTTGATTCCCGTTAACATCAACCTCATGGCTGCAAACAAGTCACTCATAA
CCGTTGAAGGAGCTGCTTGCGTTCTATTAGAGGGTGTCGCATCAGACGGC
TCCAAGCAGTCCTGCTCCACTATGGTTTATATCAGTCGGCAGGCACAGGG
ATTCTACCTTTCGCTGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000148XLOC_000148Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000273-proteinTCONS_00000273-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000273-exon-sc0000001-1575043694:2783718..2784823TCONS_00000273-exon-sc0000001-1575043694:2783718..2784823Clytia hemisphaericaexon
TCONS_00000273-exon-sc0000001-1575043694:2783390..2783664TCONS_00000273-exon-sc0000001-1575043694:2783390..2783664Clytia hemisphaericaexon
TCONS_00000273-exon-sc0000001-1510915933:2783718..2784823TCONS_00000273-exon-sc0000001-1510915933:2783718..2784823Clytia hemisphaericaexon
TCONS_00000273-exon-sc0000001-1510915933:2783390..2783664TCONS_00000273-exon-sc0000001-1510915933:2783390..2783664Clytia hemisphaericaexon
TCONS_00000273-exon-sc0000001-1491911889:2783718..2784823TCONS_00000273-exon-sc0000001-1491911889:2783718..2784823Clytia hemisphaericaexon
TCONS_00000273-exon-sc0000001-1491911889:2783390..2783664TCONS_00000273-exon-sc0000001-1491911889:2783390..2783664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2783390..2784823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240568	0.479212	0.293836	0.224089	2.55646	1.66544	2.05148	2.72925	2.01983	5.05133	3.29618	1.68689	3.45693	2.69105	0.79926	1.00634	1.06139	0.689545	1.52927	1.23372	0.385123	0.432854	0.581708	0.852115	2.5333	3.76378	0.427975	0.337535	0.352965	0.228632
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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