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TCONS_00000264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000264
Unique NameTCONS_00000264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000264 ID=TCONS_00000264|Name=TCONS_00000264|organism=Clytia hemisphaerica|type=transcript|length=2370bp
GTGAACCACAAAACCAGCATTGCaacatttaaaacgaaacttcCTTTATG
GGAGAATCAGGAGAATGGGACCTTCCTGCCCTTCCTGCCTCCTCTCCCGC
CCAGACTATCATATCTGTTATATACGTCACAAGGCGTCTTTTTGTCTGAA
CAAAAGGCAGCAAAACTCCGAGCAGAACATCATATTTTCCAACATGGCGG
ACGACGAAGTTGCATCAAACAGCGAAGTGTTCGACGATGTCGATTCAGAT
CCTGGATCAATCATAAACAATGTAGTTGAATCATGCAGTAAAATTTTAAT
CCCTTCCATGGCTCAACCTTCCATGAACAGGCCACACAATGAAGAAGAAG
TAAATACGACTGACGCCATTTTTCATACGGATCACGATGATGAAGGGATC
AACACTAAAAGTGACGAAGAATCGTCGCTGGAAGATCAAAACACCGACGA
TGTGGTAAACAACATTAAGCGTGGAAGTCCTCTTCTCGAAGATAAACAAA
GGATCAGTGGTCACAGTCCAAGAGTTGTAAGATGGACACTAGATACTATG
GCAGCTGCAATGGATGCAGTTTTTGCAGGGGAGATGACCACAACAAATGC
ATCAAGAAAATTTGGAATCCCCAGAACCACCCTCCTTGATAGGCTTTCAA
TGAAAGTTAAGAGGCAACATTTAGACTGTCCAGGTTCTTTCCCTCTTAAT
GCTGATAATGATGCAAAAGTTGTTGATTTTATTCTTGCTAATCAAAATCT
TGATAAACAAACTTTAATCAAGGGGCTTTTAAGCCTTGGAGAGGAATTAG
CTAGTATGCAGGGAAgacctttcaatgggccattAAACTCCAGGAAATGG
TTGAAATTGTTTGTTCAAAAGCATCcaaatttgaatgttttttcttacag
cCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTTTTTCTGGCACTAGCT
CCCATGCTCGACTTCAATCGTCATCTATTTCTAATGATAATACAGTGCTT
ATTCCTCAGCAAATATTACACATCCAGCATGATCCTTTAGCACAATTGCA
ATCTGAACATGGCACAGAACAAGATTCTCCAACTCTTCCAGATNtttgaa
tgttttttcttacagcCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTT
TTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTAAT
GATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGATCC
TTTAGCACAATTGCAAACTGAACATGGCACAGAACAAGATTCCCCAACTC
TTCCAGAAAACGATAATGTGTTTGATTCTTTGGAGTCATCCTTAGCAAAG
CAAGGCGTTCGAGCTATAGAACAAAAACTGGGAGCTGAACAATTGTCATA
TTTCAATTATAGATACATGAACAAAAATTTAGAGAGGGGATATGAGTTAT
GGAAATTatgcaaaatcaaaacagatGCAGGTGATAACCTCTCAACTTTT
GCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTT
CAGATTTCGATATGACAATACAGAACTTGAGGAGGGCTATAAACTTTGGG
CTGTTCTGAGAGAGAAAATGCATGAATGAACTAAGATATCCTGTGTTCGT
TTTAATATTGAATTAACTAATTACTTTATATACTTCAGTATAATTTTTTT
GCATGTTGGTTGTAAAATACGCATTATCAGTGCCTCTTAGATGGCGTTAA
ACATCTTGAAAGTGttcttttcatcttttcaaATTTCCCTTGGGGATTTT
CAGGGATGACAACCAAATCCactaaatccgcgaaatttgaTTCCTTTGTC
TTTTGCAACACAAATGTTACCTACTGTAGGGACAATATAATTTATCCTGT
TTTTATTGACTGAGTAGTAATGTTTGATTAATCTGTTATTCAATAGATCA
TTGCGTTCTCCCAAACAAATACTGGCTCATAACTTgtttttgtacatatt
tttaatcaaatttccCTTACTTTGTTAGATTTACAGATTTAGTTTGTTGT
ATATACTATCTATATACCTTGCATCATAAAAATTATACTGTTTTCtaatg
tcaacattagaccaagttatggTATACTATTTTTCGCTAATTATTGAAGT
AGTGGAATTGGATTAGGAACCATTCAAAACGTACATAAGTTCAAATATAA
GCAAAATTTGATACTCCCTCTGTGTATGTACGCTTTTCTGAAAACCCCCT
CCTCTAAGAAAATGTTTTATAATTATAGCTGGATAACAAATATGGGTAAC
ACAAGTAAGCTGGGTTACGAATATCAAATAGAAGGTTACAAAAAAACTAG
AAATcaaaacagtttgaaaa
Run BLAST on NCBI

transcript from alignment at sc0000001:2528102..2530471-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000264 ID=TCONS_00000264|Name=TCONS_00000264|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at sc0000001:2528102..2530471- (Clytia hemisphaerica)
GTGAACCACAAAACCAGCATTGCAACATTTAAAACGAAACTTCCTTTATG GGAGAATCAGGAGAATGGGACCTTCCTGCCCTTCCTGCCTCCTCTCCCGC CCAGACTATCATATCTGTTATATACGTCACAAGGCGTCTTTTTGTCTGAA CAAAAGGCAGCAAAACTCCGAGCAGAACATCATATTTTCCAACATGGCGG ACGACGAAGTTGCATCAAACAGCGAAGTGTTCGACGATGTCGATTCAGAT CCTGGATCAATCATAAACAATGTAGTTGAATCATGCAGTAAAATTTTAAT CCCTTCCATGGCTCAACCTTCCATGAACAGGCCACACAATGAAGAAGAAG TAAATACGACTGACGCCATTTTTCATACGGATCACGATGATGAAGGGATC AACACTAAAAGTGACGAAGAATCGTCGCTGGAAGATCAAAACACCGACGA TGTGGTAAACAACATTAAGCGTGGAAGTCCTCTTCTCGAAGATAAACAAA GGATCAGTGGTCACAGTCCAAGAGTTGTAAGATGGACACTAGATACTATG GCAGCTGCAATGGATGCAGTTTTTGCAGGGGAGATGACCACAACAAATGC ATCAAGAAAATTTGGAATCCCCAGAACCACCCTCCTTGATAGGCTTTCAA TGAAAGTTAAGAGGCAACATTTAGACTGTCCAGGTTCTTTCCCTCTTAAT GCTGATAATGATGCAAAAGTTGTTGATTTTATTCTTGCTAATCAAAATCT TGATAAACAAACTTTAATCAAGGGGCTTTTAAGCCTTGGAGAGGAATTAG CTAGTATGCAGGGAAGACCTTTCAATGGGCCATTAAACTCCAGGAAATGG TTGAAATTGTTTGTTCAAAAGCATCCAAATTTGAATGTTTTTTCTTACAG CCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTTTTTCTGGCACTAGCT CCCATGCTCGACTTCAATCGTCATCTATTTCTAATGATAATACAGTGCTT ATTCCTCAGCAAATATTACACATCCAGCATGATCCTTTAGCACAATTGCA ATCTGAACATGGCACAGAACAAGATTCTCCAACTCTTCCAGATNTTTGAA TGTTTTTTCTTACAGCCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTT TTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTAAT GATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGATCC TTTAGCACAATTGCAAACTGAACATGGCACAGAACAAGATTCCCCAACTC TTCCAGAAAACGATAATGTGTTTGATTCTTTGGAGTCATCCTTAGCAAAG CAAGGCGTTCGAGCTATAGAACAAAAACTGGGAGCTGAACAATTGTCATA TTTCAATTATAGATACATGAACAAAAATTTAGAGAGGGGATATGAGTTAT GGAAATTATGCAAAATCAAAACAGATGCAGGTGATAACCTCTCAACTTTT GCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTT CAGATTTCGATATGACAATACAGAACTTGAGGAGGGCTATAAACTTTGGG CTGTTCTGAGAGAGAAAATGCATGAATGAACTAAGATATCCTGTGTTCGT TTTAATATTGAATTAACTAATTACTTTATATACTTCAGTATAATTTTTTT GCATGTTGGTTGTAAAATACGCATTATCAGTGCCTCTTAGATGGCGTTAA ACATCTTGAAAGTGTTCTTTTCATCTTTTCAAATTTCCCTTGGGGATTTT CAGGGATGACAACCAAATCCACTAAATCCGCGAAATTTGATTCCTTTGTC TTTTGCAACACAAATGTTACCTACTGTAGGGACAATATAATTTATCCTGT TTTTATTGACTGAGTAGTAATGTTTGATTAATCTGTTATTCAATAGATCA TTGCGTTCTCCCAAACAAATACTGGCTCATAACTTGTTTTTGTACATATT TTTAATCAAATTTCCCTTACTTTGTTAGATTTACAGATTTAGTTTGTTGT ATATACTATCTATATACCTTGCATCATAAAAATTATACTGTTTTCTAATG TCAACATTAGACCAAGTTATGGTATACTATTTTTCGCTAATTATTGAAGT AGTGGAATTGGATTAGGAACCATTCAAAACGTACATAAGTTCAAATATAA GCAAAATTTGATACTCCCTCTGTGTATGTACGCTTTTCTGAAAACCCCCT CCTCTAAGAAAATGTTTTATAATTATAGCTGGATAACAAATATGGGTAAC ACAAGTAAGCTGGGTTACGAATATCAAATAGAAGGTTACAAAAAAACTAG AAATCAAAACAGTTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000142XLOC_000142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000264-exon-sc0000001-1575043694:2528102..2530471TCONS_00000264-exon-sc0000001-1575043694:2528102..2530471Clytia hemisphaericaexon
TCONS_00000264-exon-sc0000001-1510915933:2528102..2530471TCONS_00000264-exon-sc0000001-1510915933:2528102..2530471Clytia hemisphaericaexon
TCONS_00000264-exon-sc0000001-1491911889:2528102..2530471TCONS_00000264-exon-sc0000001-1491911889:2528102..2530471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2528102..2530471 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.61569 10.1555 4.87018 3.51917 25.843 20.6749 20.7934 22.636 11.9278 10.8463 9.34611 9.94936 5.94873 6.25119 9.54072 8.27167 16.3499 14.0784 6.84456 7.81622 11.7152 10.8401 14.2003 15.0529 5.72742 6.08832 10.1101 6.73737 9.54129 10.624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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