TCONS_00000251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000251
Unique NameTCONS_00000251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000251 ID=TCONS_00000251|Name=TCONS_00000251|organism=Clytia hemisphaerica|type=transcript|length=1422bp
GTTTTGGTAGAACATACCTTCTTGTGAAGAGAGTTAATACTTAAACTATC
TTGCTGCAGATTAAAATCGAACAGcttggaaaaataaatttaattttttt
gaacagagaaaatcgtcaaaaaatgAATATCTTCACAAAGTCGATCACAC
GGAAGATCAGTCGGCCAGCTTATGCTATCCGAACATTAATCAATGATTCC
GTTTCAGTTAAAGAGAAGAAAATCGGTATTATCGGAATGGGAAATGTTGG
TACGGCGGTGGCAAATAATTTATTGAGAAACAACTACAAGTTGACGAGCA
TTATAGATAtcgaagcaaaaaaatgcgAAGGCTATCCGTGCAAAGTTGGG
AAGACTGCGAGAGAGGTTGTAGAAGATTGTGACGTCATCGTTTCCGCACT
ACCTAAGCCGGTACATATCAAACAAGCTTTTGAAGGACCGGATGGCATGT
TAGCCGGAATGTCTCCAGGGAAAATTTGGATCGATCACTCAACCACGGAT
TTCAAGCAAACGGAAGAACAAACAAAAGTTTTAGAAGAAAAACAATGCTA
CTTANTTTCAAGCAAACGGAAGAAcaaacaaaagctttagaagaAAAACA
ATGTTACTTGCTGGAATCTCCCATTACCGGTGGTTTAGAAGCATTACGGA
AAGGCCAGATGACCGTATTAGTAGCCGGAAATAAGGACGCTTTTGATCAC
ACTTATGACTTACAGAACGCGTCTTATCAAACAGTTTTGTATACCGGTGG
TGCCGGAAGCGCGCTCATTCCGAAAGTGATATCCAACATGCTTTGTGCTA
TGGTTACCATAGCAGCTGGTGAGGCATTGGTTGTTTGCAAGAAGGCTGGT
ATGGACGTGAAGCACACTTACGATATCATTCGCGCGACAGCTGGGAACAG
TTTCGCGTGGGAAACAGCGGTGCCTATGATCGCGCAAGGAGATTACGGCA
CCGCCTTTACGTTAGATCTTTTCTGTAAGGATAATCAACTTATGCACGAT
ATCGCGCGTCAATATAATGTTCCAATCGAATTGATGAGCCATGTACAACA
AATGTATAATCGCGCCCTTGCTATGTATGGACCTGACGCCCCTTGTTATA
GCCCCGCCAAGATTGTTGAAGACGCAACGGGCGTTAGGTTGCAAGATGAA
GGTTTTAAAAATTGGGAATATTCGGTTGAAGATGTAGATGGTTCGCTTGT
TGTTCGACATGATGGCATCGAAACAAAGCGTACCGGTCACCCAATGCCTA
AGTAGAAATTATCTGAAACATATATCTCCTGTGAAAAAACTGTTAGttta
ttgaaatattaaaatgttatgaaaatattatatgaaaTGATTAGATGATG
AATATATTTGATATATAATATATTTGATATTATAATATatatgataatat
tttgaataaattttacaCAATA
Run BLAST on NCBI

protein sequence of TCONS_00000251-protein

>TCONS_00000251-protein ID=TCONS_00000251-protein|Name=TCONS_00000251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MLLXFKQTEEQTKALEEKQCYLLESPITGGLEALRKGQMTVLVAGNKDAF
DHTYDLQNASYQTVLYTGGAGSALIPKVISNMLCAMVTIAAGEALVVCKK
AGMDVKHTYDIIRATAGNSFAWETAVPMIAQGDYGTAFTLDLFCKDNQLM
HDIARQYNVPIELMSHVQQMYNRALAMYGPDAPCYSPAKIVEDATGVRLQ
DEGFKNWEYSVEDVDGSLVVRHDGIETKRTGHPMPK
Run BLAST on NCBI

transcript from alignment at sc0000001:2415082..2417578-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000251 ID=TCONS_00000251|Name=TCONS_00000251|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0000001:2415082..2417578- (Clytia hemisphaerica)
GTTTTGGTAGAACATACCTTCTTGTGAAGAGAGTTAATACTTAAACTATC
TTGCTGCAGATTAAAATCGAACAGCTTGGAAAAATAAATTTAATTTTTTT
GAACAGAGAAAATCGTCAAAAAATGAATATCTTCACAAAGTCGATCACAC
GGAAGATCAGTCGGCCAGCTTATGCTATCCGAACATTAATCAATGATTCC
GTTTCAGTTAAAGAGAAGAAAATCGGTATTATCGGAATGGGAAATGTTGG
TACGGCGGTGGCAAATAATTTATTGAGAAACAACTACAAGTTGACGAGCA
TTATAGATATCGAAGCAAAAAAATGCGAAGGCTATCCGTGCAAAGTTGGG
AAGACTGCGAGAGAGGTTGTAGAAGATTGTGACGTCATCGTTTCCGCACT
ACCTAAGCCGGTACATATCAAACAAGCTTTTGAAGGACCGGATGGCATGT
TAGCCGGAATGTCTCCAGGTAAGCATGCGAGTAATTCTCGATGTACTTTA
AGGATAGAAAATTTCATGATTTTCATTATTTTGACACTGGAGTTTCTACC
AAATAAAAAATAAATTTGAAAAAAAAAAACACTTTCAATAGTTGGAATTA
TTCTCTAATTCGAAACGAATCCCTTGAAAATAAGAGAGCGTTAACATTTA
TCGGGTTATAAGACTGCCTTTCCAAAAATAGGAGGAAAACCTGAGTAGTC
TATACTGTTAAAAGGACTACATTTAAATACAATATCAAACACTGGGCGAA
ATAAGAGATTTGAAATGAAAGATATTCTTTATTCCAGATCTGGAAATATC
TTGAAAATATGACTTTTCTATATTTCCAAAATTGTGGAAATACCATATTT
CATGATATTTCCAAATCATATTTTAAAAACATTTCCAACTTTTGGAAATA
AGATATTTCCAAAGATTGGAAATATCTTGAACATATGATGTTTCAATGAA
TTTCAGAATTGGAAATATCATGAAATATGGTATTTCCACAACTTTGGAAA
TATAGAAAAGTCATATTTCCATATTTACAAAAGTGTATGGAAATATCATA
TTTTCAAGATATTTCCAGGATTGGAAATCTCTCATTTCGCCCAGTGAAAG
ATTCATAGGATAAAATTATTTTTGGAAACTATTGCAGGTTAGAAAACTGC
ATCTACGAATAAAAAAATATTAAGAAAGCCTGATTGATTCCCGAAGTATT
CATATACATGCACTTTTATGATCGAGTTTTTCTCATAGCAAAATATTCTC
GTCGATTGTTAAAATATCAATGGTTTAAATATACTATGAAACTGATTTTC
TGAATATTTTGAGCTTAAAGCCATTCTCTCAATTTTCTTACCATTTTTGT
GCAATTTTTTAAAAAATTGGGTTTTAAATTTTTCTTTAATTTGGCCATAA
AAGCCTAATGTTCTCATATAGTTTGTTCTTATAGGAAACATGTATTAATT
CTCATCTCTATTCTAGGGAAAATTTGGATCGATCACTCAACCACGGATTT
CAAGCAAACGGAAGAACAAACAAAAGTTTTAGAAGAAAAACAATGCTACT
TANTTTCAAGCAAACGGAAGAACAAACAAAAGCTTTAGAAGAAAAACAAT
GTTACTTGCTGGAATCTCCCATTACCGGTGGTTTAGAAGCATTACGGAAA
GGCCAGATGACCGTATTAGTAGCCGGAAATAAGGACGCTTTTGATCACAC
TTATGACTTACAGAACGCGTCTTATCAAACAGTTTTGTATACCGGTGGTG
CCGGAAGCGCGCTCATTCCGAAAGTGATATCCAACATGCTTTGTGCTATG
GTTACCATAGCAGCTGGTGAGGCATTGGTTGTTTGCAAGAAGGCTGGTAT
GGACGTGAAGCACACTTACGATATCATTCGCGCGACCGCTGGGAACAGTT
TCGNGTTGTTTGCAAGAAGGCTGGTATGGACGTGAAGCACACTTACGATA
TCATTCGCGCGACAGCTGGGAACAGTTTCGCGTGGGAAACAGCGGTGCCT
ATGATCGCGCAAGGAGATTACGGCACCGCCTTTACGTTAGATCTTTTCTG
TAAGGATAATCAACTTATGCACGATATCGCGCGTCAATATAATGTTCCAA
TCGAATTGATGAGCCATGTACAACAAATGTATAATCGCGCCCTTGCTATG
TATGGACCTGACGCCCCTTGTTATAGCCCCGCCAAGATTGTTGAAGACGC
AACGGGCGTTAGGTTGCAAGATGAAGGTTTTAAAAATTGGGAATATTCGG
TTGAAGATGTAGATGGTTCGCTTGTTGTTCGACATGATGGCATCGAAACA
AAGCGTACCGGTCACCCAATGCCTAAGTAGAAATTATCTGAAACATATAT
CTCCTGTGAAAAAACTGTTAGTTTATTGAAATATTAAAATGTTATGAAAA
TATTATATGAAATGATTAGATGATGAATATATTTGATATATAATATATTT
GATATTATAATATATATGATAATATTTTGAATAAATTTTACACAATA

Coding sequence (CDS) from alignment at sc0000001:2415082..2417578-

>TCONS_00000251 ID=TCONS_00000251|Name=TCONS_00000251|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000001:2415082..2417578- (Clytia hemisphaerica)
GCTGGTATGGACGTGAAGCACACTTACGATATCATTCGCGCGACAGCTGG
GAACAGTTTCGCGTGGGAAACAGCGGTGCCTATGATCGCGCAAGGAGATT
ACGGCACCGCCTTTACGTTAGATCTTTTCTGTAAGGATAATCAACTTATG
CACGATATCGCGCGTCAATATAATGTTCCAATCGAATTGATGAGCCATGT
ACAACAAATGTATAATCGCGCCCTTGCTATGTATGGACCTGACGCCCCTT
GTTATAGCCCCGCCAAGATTGTTGAAGACGCAACGGGCGTTAGGTTGCAA
GATGAAGGTTTTAAAAATTGGGAATATTCGGTTGAAGATGTAGATGGTTC
GCTTGTTGTTCGACATGATGGCATCGAAACAAAGCGTACCGGTCACCCAA
TGCCTAAGTAGATGCTACTTANTTTCAAGCAAACGGAAGAACAAACAAAA
GCTTTAGAAGAAAAACAATGTTACTTGCTGGAATCTCCCATTACCGGTGG
TTTAGAAGCATTACGGAAAGGCCAGATGACCGTATTAGTAGCCGGAAATA
AGGACGCTTTTGATCACACTTATGACTTACAGAACGCGTCTTATCAAACA
GTTTTGTATACCGGTGGTGCCGGAAGCGCGCTCATTCCGAAAGTGATATC
CAACATGCTTTGTGCTATGGTTACCATAGCAGCTGGTGAGGCATTGGTTG
TTTGCAAGAAGGCTGGTATGGACGTGAAGCACACTTACGATATCATTCGC
GCGACAGCTGGGAACAGTTTCGCGTGGGAAACAGCGGTGCCTATGATCGC
GCAAGGAGATTACGGCACCGCCTTTACGTTAGATCTTTTCTGTAAGGATA
ATCAACTTATGCACGATATCGCGCGTCAATATAATGTTCCAATCGAATTG
ATGAGCCATGTACAACAAATGTATAATCGCGCCCTTGCTATGTATGGACC
TGACGCCCCTTGTTATAGCCCCGCCAAGATTGTTGAAGACGCAACGGGCG
TTAGGTTGCAAGATGAAGGTTTTAAAAATTGGGAATATTCGGTTGAAGAT
GTAGATGGTTCGCTTGTTGTTCGACATGATGGCATCGAAACAAAGCGTAC
CGGTCACCCAATGCCTAAGTAGATGCTACTTANTTTCAAGCAAACGGAAG
AACAAACAAAAGCTTTAGAAGAAAAACAATGTTACTTGCTGGAATCTCCC
ATTACCGGTGGTTTAGAAGCATTACGGAAAGGCCAGATGACCGTATTAGT
AGCCGGAAATAAGGACGCTTTTGATCACACTTATGACTTACAGAACGCGT
CTTATCAAACAGTTTTGTATACCGGTGGTGCCGGAAGCGCGCTCATTCCG
AAAGTGATATCCAACATGCTTTGTGCTATGGTTACCATAGCAGCTGGTGA
GGCATTGGTTGTTTGCAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000137XLOC_000137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000251-proteinTCONS_00000251-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000251-exon-sc0000001-1575043694:2417111..2417578TCONS_00000251-exon-sc0000001-1575043694:2417111..2417578Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1575043694:2415737..2416112TCONS_00000251-exon-sc0000001-1575043694:2415737..2416112Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1575043694:2415082..2415659TCONS_00000251-exon-sc0000001-1575043694:2415082..2415659Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1510915933:2417111..2417578TCONS_00000251-exon-sc0000001-1510915933:2417111..2417578Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1510915933:2415737..2416112TCONS_00000251-exon-sc0000001-1510915933:2415737..2416112Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1510915933:2415082..2415659TCONS_00000251-exon-sc0000001-1510915933:2415082..2415659Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1491911889:2417111..2417578TCONS_00000251-exon-sc0000001-1491911889:2417111..2417578Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1491911889:2415737..2416112TCONS_00000251-exon-sc0000001-1491911889:2415737..2416112Clytia hemisphaericaexon
TCONS_00000251-exon-sc0000001-1491911889:2415082..2415659TCONS_00000251-exon-sc0000001-1491911889:2415082..2415659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2415082..2417578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.204736	0.228171	0.231812	0.356387	0.0394425	0	6.39248	8.02636	36.7975	11.601	28.269	70.7281	23.9842	26.3825	60.9345	101.59	12.076	6.90889	5.6586	6.73468	15.4401	16.9244	24.816	20.2747	14.1624	5.26884	15.3601	17.2915	112.289	85.1671
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0133286PGD_dom_2
IPR0061156PGDH_NADP-bd
IPR029154NADP-bd
IPR0089276-PGluconate_DH_C-like
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004616phosphogluconate dehydrogenase (decarboxylating) activity
GO:0051287NAD binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0051287 NAD binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
Blast
[Close]
BLAST of TCONS_00000251 vs. Swiss-Prot (Human)
Match: GLYR1 (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.044e-23
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 3 
Query:  174 AIRTLINDSVSVKEKKIGIIGMGNVGTAVANNLLRNNYKLTSIIDIEAKKCEGY---PCKVGKTAREVVEDCDVIVSALPKPVHIKQAFEGPDGMLAGMSPGKIWIDHSTTDFKQTEEQTKVL 533
            A  T +N S++  +KKIG +G+G +G+ + +NLL+  + +T + +  A+KC+ +     ++G+T  EVV  CD+  + +  P   K    GP G+L G+ PGK ++D ST D     E  +V+
Sbjct:  254 ADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVT-VWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVI 375

HSP 2 Score: 50.447 bits (119), Expect = 1.044e-23
Identity = 36/156 (23.08%), Postives = 64/156 (41.03%), Query Frame = 2 
Query:  608 LLESPITGGLEALRKGQMTVLVAGNKDAFDHTYDLQNASYQTVLYTGGAGSALIPKVISNMLCAMVTIAAGEALVVCKKAGMDVKHTYDIIRATAGNSFAWETAVPMIAQGDYGTAFTLDLFCKDNQLMHDIARQYNVPIELMSHVQQMYNRALAM 1075
             LE+P++G  +    G + +L AG++  ++       A  +T  + G  G+A    +I NM+         E L +    G   +   DI+      S   +     I QG++   F L    KD +L   +    N P  + +   ++Y RA A+
Sbjct:  382 FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKAL 537
The following BLAST results are available for this feature:
BLAST of TCONS_00000251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLYR11.044e-2333.33Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
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