TCONS_00000242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000242
Unique NameTCONS_00000242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000242 ID=TCONS_00000242|Name=TCONS_00000242|organism=Clytia hemisphaerica|type=transcript|length=2056bp
CCAAAATACAGAAGAAGAAAGTGATGCCAGAACACAACACGGCCAAGAAG
AAACATACAACAGCTACTTCACAGCAACCAATCCCTCATCCTTCTGTAAT
AACAACTGAAAAACTGAAACCAGCAGTAACAAAAAGTagtaaaacagata
aaaaacCTACTTTTACAACAGAGACAAAAAAAGTTGACATCAAGGCTAGC
GAGTTAAAGAAGCAACAAAAGTTGTCACCCGTTGCTGATAAAAAGATTGA
AAACAAAGCAATCGAGACAAAAACAAAGTCAAATGACTCGTCGAgcagca
aaaaaatcaaaaataaggCAATTGAGAGAAAGAAAGAGCAAAATGTATCG
CCAACGgttgacaaaaaaatcaaaagcaaaGCAATCGAGGCAAATAAGTT
CAATACAAAGCAGAAGGTGAAGACCGACTCACCGGCCAAAAAACAGGACC
aacatttgaaaacaaaaccagACAAAAGCATTCAAAACTTGATTGATAAA
TTAGATGCTTCAGAGAAATCTCCAGATGACAAGGTCTCTCTATTATCAAA
CAGTGCCGCTGGCCCTATGACGCCGACCAAACCGGCTACAAACAAGACGC
AACATCGCCAAGAGATCAAGCATGAAGAGCAACAGTCATTAGGGCTGGTT
TCCACTAACCAACAAAATGTTGTACCTGATGGTGATATAAAAGCTTCACG
AGTGTGTAAACCAGGTGTTATGAAAACGTATTTTGAAGGGAAACCTAACT
GTCTTGTGATTGGAGATTCAATTGCTTTAGGGTATAGCTACTCAGCTGCA
GCCGCCCTTAATGGGAGTTGTCAAGTTCAATTGGCGCCCTCTTCAAAAGC
AGGGGCGGCGATGGATTCAAGCTATGGGCGTCAATGTTTGGATTATTTTT
TATCCACAATAAGTTTACGCCCTACACAATATGATGTAATATTGTTCAAT
TTTGGTCTGCATGATATTGACTATCTCGACAAGTATCCTGAGCAAGTAAT
ATTACTGATTACGTCAACAATTTGGAAGACATCAAACGACGATTACTGGA
TACGGGTGCAACAGTAGGATTTGTACTCTCAACACCGGTCACTTATGATA
AACGAAAAGACGATATGATAAGGAGATATAATCATGCAGccaaaaaGGTG
ATGGAAACAGGTGAGGACAAAATAATGACCATCAACCTTCACAAAATCGT
GACCAGAGAGTGTGGCCCAGTCccttttgaaaattgttatatgATGAAGA
AACCGCATGACGTGCACTATGGTGTGACAGGATCCATAATGCTTGGCAAA
CGGGTTGCATCAGCAATCTCTTATCTTctcaagaaaagaaaattcaaacg
AAGCTGGACAGCTTTAACACCATCCAGTGTCGAGTTAGCGTCCAACAAAA
CATTATGTGCCGTGCCTGGTACAGCCTGTCCGGTAAATAGTGTTTGTATG
AACAATATGGTTTCACGTTCCGGACATGGTTGTTGTCAGCTGTCCGGTGG
TGTCGATTGCGGTGACTCATGGCATTGTTGTCCGGCAGGTAGTTTTTGTC
ATCCAAAATGCTCGGACACAAAGTGTTCTTGTATGTCCGGCAATGCTTAC
CAATCAATGATGAGTAATGGTGGTTATTCACCACAAGCTCAAACAATGTT
ACCTGGTTCTGCCGACACTGCTTATCCTTATGGTTATGCTAAACGTAAAT
TTTGATAGGTAACATACTGTAGAGGAGATTATTGGTCATTTACGCATGAA
GGTTCTTAATAGAGTTTATGTAAAATAACCATTTGTGTTATGCCTCCGGA
TACAGTTTGGTTGTTTTAATTTAAGCTCCCAAAAGCTTATAAACATAGTC
GCAATGATATCGGCCATCAAAGAAGTTAGAAGTGAAacaagaactttcaa
aaatgggaaaaaaactGAGGATTGTGATGAAAATCCATTTTACATACGAT
GTTATTTCAACATCCATGGAGAAATGTTCACAACGCAATAATGATGTCAA
GAAggattttaagatattttataTGTTCATATTATAGCAAATTTATATCA
TAAGCA
Run BLAST on NCBI

transcript from alignment at sc0000001:2131680..2135889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000242 ID=TCONS_00000242|Name=TCONS_00000242|organism=Clytia hemisphaerica|type=transcript|length=4210bp|location=Sequence derived from alignment at sc0000001:2131680..2135889- (Clytia hemisphaerica)
CCAAAATACAGAAGAAGAAAGTGATGCCAGAACACAACACGGCCAAGAAG
AAACATACAACAGCTACTTCACAGCAACCAATCCCTCATCCTTCTGTAAT
AACAACTGAAAAACTGAAACCAGCAGTAACAAAAAGTAGTAAAACAGATA
AAAAACCTACTTTTACAACAGAGACAAAAAAAGTTGACATCAAGGCTAGC
GAGTTAAAGAAGCAACAAAAGTTGTCACCCGTTGCTGATAAAAAGATTGA
AAACAAAGCAATCGAGACAAAAACAAAGTCAAATGACTCGTCGAGCAGCA
AAAAAATCAAAAATAAGGCAATTGAGAGAAAGAAAGAGCAAAATGTATCG
CCAACGGTTGACAAAAAAATCAAAAGCAAAGCAATCGAGGCAAATAAGTT
CAATACAAAGCAGAAGGTGAAGACCGACTCACCGGCCAAAAAACAGGACC
AACATTTGAAAACAAAACCAGACAAAAGCATTCAAAACTTGATTGATAAA
TTAGATGCTTCAGAGAAATCTCCAGATGACAAGGTCTCTCTATTATCAAA
CAGTGCCGCTGGCCCTATGACGCCGACCAAACCGGCTACAAACAAGACGC
AACATCGCCAAGAGATCAAGCATGAAGAGCAACAGTCATTAGGGCTGGTT
TCCACTAACCAACAAAATGTTGTACCTGATGGTGATATAAAAGCTTCACG
AGTGTGTAAACCAGGTGTTATGAAAACGTATTTTGAAGGGAAACCTAACT
GTCTTGTGATTGGAGATTCAATTGCTTTAGGGTAAGTTGTCAATTGTCCA
TTGCAATTCAATATGTTGCCCTTCCGTATTTCTAAAGAGAAACTTTTTCG
GAAAATAGGTCTTCGGCTTAAATTTTGGAAATTCTGACAATTTTTTGGCC
TTTTAACGGTCAAAGGTTTTCATGAAATTATAGCGTAGGGGTCGATTTTT
CGTCCCAAATTTACTAAAATTTGGTTACATTTTCTCTACATTATAAGGGT
CCAATTTCGAAGGCCTAATTTTAGGCCGCATATACGGTCGTATTTAAATA
GAGTGGAGTAGTATGCAAATATAAGAAAAACTTTTATTATGGCTAATCAA
CTTCATCATTATCTCTATTCCAGGTATAGCTACTCAGCTGCAGCCGCCCT
TAATGGGAGTTGTCAAGTTCAATTGGCGCCCTCTTCAAAAGCAGGGGCGG
CGATGGATTCAAGCTATGGGCGTCAATGTTTGGATTATTTTTTATCCACA
ATAAGTTTACGCCCTACACAATATGATGTAATATTGTTCAATTTTGGTCT
GCATGATATTGACTATCTCGACAAGTATCCTGAGGTATATGCCGTATATG
TCAGACAGAATAGATTCCTTATCCCTGTAATTCCCAGAGCCTAAATTAAG
GACTCCGTATAACCTAGGTGTCCGAAAAAAGTATTTTTTGTTGATTTATT
TTTTCTTCACAAAACTTTGAAATTTAAATTGCATTTCATTGTTAAAGCTT
CAGGGCTAGTATAATAGACTATTTTAAAGATATTCTCAATTTTAAGAAAA
AAAATTTTTCATTAGAAACTGAAAGATAGTACCAAAATCTACCAGTGTGC
AAAATTTCAGCTTAATCGGATCAGAATTGGCCTAGTTATTAAAGTTTTAA
ATTCTGGTCAGTAAATTAATGGTCTGTAAATTACATTTTCGTAAATTGGG
CATAACTTACCAACCGCTGTTGCTATTAACAAAATTTTAAAAAAGTACTC
CAATGAATTCCAGTTTTTTTAGACACATTGTATAAAGCTGATACGCCTTA
TTATTACACAGGAAGCAAGTAATATTACTGATTACGTCAACAATTTGGAA
GACATCAAACGACGATTACTGGATACGGGTGCAACAGTAGGATTTGTACT
CTCAACACCGGTCACTTATGATAAACGAAAAGACGATATGATAAGGAGAT
ATAATCATGCAGCCAAAAAGTAAATATTTTTTAATTTTGTGATTTTTATG
ATCTTAAATTCGAAAGTGTGTTAAACTGCCGACAAAAAGAAATAAAGATT
CTTTAAACATTTGTGATATTTAAGTCAATTTTTAACAGAAAAGCCAAAAT
TTCTGTTACAACCCCAGTTGAATTTGGCTGATGAAATATTCGTCATCCCA
GGGAAACCCCTGTCCCCCAAGTATGCATTCACTACCTTCCGATTTCGGAA
TGCAGATTGATTTAGAAAGACCAGGCTGTATAACAGAAGCATTAAAATAA
TGAAATATCCTTATTAACTGTAAACTCTTATTATCAACCATAATAGTTTA
AAATCTTGGCGAAACTGATCAGAATTGTATGCGGAGAGTGTACATAGGAA
GTTCTTTATTTCATTCTAGGGTGATGGAAACAGGTGAGGACAAAATAATG
ACCATCAACCTTCACAAAATCGTGACCAGAGAGTGTGGCCCAGTCCCTTT
TGAAAATTGTTATATGATGAAGAAACCGCATGACGTGGTGAGTTTTTCTT
GTGTAGTTTTTGTATTTTGCAGTTTTCCTGTACTGCTCGAGAAAAAGTCC
GGAGAAAGTATTGTCAGTATTAATTGTTCAGCGTTTGTTGTTCGTCTAGT
TTGTTTATCATTAAGAATAATATCTTCAAGGGTTGAAATTCAATTTTGCA
CGCGCAGATTTTTGAATAAATGTTTAAACCTTTAACTGTTTAAGCTTACG
ATGTTGTTTTTCTTTTTGTAAAATGGCGAAGGAAAAGTTTCCTGGGATTC
CAGAAATTTGGGGTTAAGTTTTCGACTATAATTTAGCAGCTTTAACATTG
ATATGCTATTTGAAATGTTTAATATTTCTTCTACAGCACTATGGTGTGAC
AGGATCCATAATGCTTGGCAAACGGGTTGCATCAGCAATCTCTTATCTTC
TCAAGAAAAGAAAATTCAAACGAAGCTGGACAGGTTTGGTTTTTATACAC
CCAACAGTCATTAGGTTTAAGTTTACCAGCATCAAACGTTGTTAAATGGG
TATACCTTAGCTAAGCGCACCAATGCAGCAACTTTTGGCTTTGATTATTT
GATATAATTCGGTCTTTATCAAACTCGACTCAACTCTCCTTTTAGCATTT
CAGTTGCATTCCAACCAGCCTCAAGACCTGGAAAAGGCCACATTTTTGAT
AAACTTTTGCTTCGCCGTAATTTTACTCTAACTTAAACCTGTATGGAATG
ATGTCCTAACTCGCATAAGACCATCATAAACCGCCCAAAGCGACCTTTTC
CCGTGGGTAGCAGGTCGGCCGCTAAGAGGGATTGACATTCCCTACTCTCG
GGTACCTAATAGCCGGGGGGGTTGGAAAATATCTCAAAACTTAATAAGCG
GCGGGGGGTTGGAATAAAAATGTACTGGGTGGAAAACTTTTGAAAAGGAG
GCTAATACAGCAGAATAAGGATTAATTGGGGAACGGCTATATAGGTACAC
GACAGTAATAGGAGCACACATTCAAAACTATGTTTGAACTTTTTACATAT
CTTTTTCATTTGTAGCTTTAACACCATCCAGTGTCGAGTTAGCGTCCAAC
AAAACATTATGTGCCGTGCCTGGTACAGCCTGTCCGGTAAATAGTGTTTG
TATGAACAATATGGTTTCACGTTCCGGACATGGTTGTTGTCAGCTGTCCG
GTGGTGTCGATTGCGGTGACTCATGGCATTGTTGTCCGGCAGGTAGTTTT
TGTCATCCAAAATGCTCGGACACAAAGTGTTCTTGTATGTCCGGCAATGC
TTACCAATCAATGATGAGTAATGGTGGTTATTCACCACAAGCTCAAACAA
TGTTACCTGGTTCTGCCGACACTGCTTATCCTTATGGTTATGCTAAACGT
AAATTTTGATAGGTAACATACTGTAGAGGAGATTATTGGTCATTTACGCA
TGAAGGTTCTTAATAGAGTTTATGTAAAATAACCATTTGTGTTATGCCTC
CGGATACAGTTTGGTTGTTTTAATTTAAGCTCCCAAAAGCTTATAAACAT
AGTCGCAATGATATCGGCCATCAAAGAAGTTAGAAGTGAAACAAGAACTT
TCAAAAATGGGAAAAAAACTGAGGATTGTGATGAAAATCCATTTTACATA
CGATGTTATTTCAACATCCATGGAGAAATGTTCACAACGCAATAATGATG
TCAAGAAGGATTTTAAGATATTTTATATGTTCATATTATAGCAAATTTAT
ATCATAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000131XLOC_000131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000242-exon-sc0000001-1575043694:2135109..2135889TCONS_00000242-exon-sc0000001-1575043694:2135109..2135889Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1575043694:2134556..2134766TCONS_00000242-exon-sc0000001-1575043694:2134556..2134766Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1575043694:2133921..2134074TCONS_00000242-exon-sc0000001-1575043694:2133921..2134074Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1575043694:2133403..2133520TCONS_00000242-exon-sc0000001-1575043694:2133403..2133520Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1575043694:2132957..2133053TCONS_00000242-exon-sc0000001-1575043694:2132957..2133053Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1575043694:2131680..2132374TCONS_00000242-exon-sc0000001-1575043694:2131680..2132374Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2135109..2135889TCONS_00000242-exon-sc0000001-1510915933:2135109..2135889Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2134556..2134766TCONS_00000242-exon-sc0000001-1510915933:2134556..2134766Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2133921..2134074TCONS_00000242-exon-sc0000001-1510915933:2133921..2134074Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2133403..2133520TCONS_00000242-exon-sc0000001-1510915933:2133403..2133520Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2132957..2133053TCONS_00000242-exon-sc0000001-1510915933:2132957..2133053Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1510915933:2131680..2132374TCONS_00000242-exon-sc0000001-1510915933:2131680..2132374Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2135109..2135889TCONS_00000242-exon-sc0000001-1491911889:2135109..2135889Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2134556..2134766TCONS_00000242-exon-sc0000001-1491911889:2134556..2134766Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2133921..2134074TCONS_00000242-exon-sc0000001-1491911889:2133921..2134074Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2133403..2133520TCONS_00000242-exon-sc0000001-1491911889:2133403..2133520Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2132957..2133053TCONS_00000242-exon-sc0000001-1491911889:2132957..2133053Clytia hemisphaericaexon
TCONS_00000242-exon-sc0000001-1491911889:2131680..2132374TCONS_00000242-exon-sc0000001-1491911889:2131680..2132374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2131680..2135889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29285	0.244223	0.180764	0.128814	0.128814	0	0.738696	0.776598	1.53068	0.297698	0.209788	1.09802	3.04242	2.35175	1.02057	3.54562	1.86365	2.2686	0.236774	0.210869	1.18719	1.4246	1.10109	1.01429	0.500158	1.79122	0.167244	0.224157	0.136773	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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