TCONS_00000238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000238
Unique NameTCONS_00000238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000238 ID=TCONS_00000238|Name=TCONS_00000238|organism=Clytia hemisphaerica|type=transcript|length=3357bp
AGGATAAAATGAAAAAGACGGTTCAAACAAAGTCCGTGATATCACCACAA
ATACGACACAACCCAAGTGGGCCATTCACACTGCAGATGATAAAGAGTGG
AAAAGTGATTTTAGTGCAAATAACAACTTGGTTTTAAGTCCAACAGAAAA
TGGTGACGGTACCCAATCTTCTGGATTTCCAAAAGCTTCTTTATTAAAAT
ACGAAATCAGGCATTTAACCAATTTAAAACAAATTGAAGGTCCTGAACAA
TTTTTATCTAAGAATACGAAAAATCCATCGGTCCCGATTACCGAGCAACG
AGAAAACGAAAAAGCCGACGGTAAAAGCGACTCGGAAGACGAGAATATGA
CCGAACGTTTACGATCAACTCGGTATTCGAGTAGTAGAAACTCGGATGAT
TTACTCGGCCGTTCTTCTTACCGTTCAACCCGAACTTCTTACTCAGATGA
CATTGGTGGATTAACACGTGGTACTAGCGCAGGCAGTAGCCGATACCGTA
GAAGCGTACTAGACGACCCGCTCGATACGTACAGAAGTAGCCGTAGCTCG
AGACGCTTAGATGATTATACACCAACGACTGATTATTCAACGACGTCATC
TTCCAGATACGACCGTCCATACCGTAGTACCACGTCTGCAGACGAAACTC
GCTCTTATCGGACAACGTCTCGCCGTACACTTGATGATCCGGTTATAGAA
TCACCGAGACGTTCTCGACGATCAAAAGTGAACGGTATTGACACAGCGAT
AACGACGACATCTGTTACAGCCACGGTAGATGGAGACTGTAATAAGtgta
aagaaaaacaagaaagaatAATCCAAttagaaaatgataaaaataaagag
tttgaaaaatgtaaagaaaagGATTTAAGAATTGAGGAACTAGAAAAACA
ATGCTCTAGGGACTCTGAAAAACGGAAGGAAAAGGATGAACGAATTCGAG
ATTtaattaaagaattaaaaaatgtttccgAAGACGTTAAATCGAAACAA
GAACTGGTTAAAGANAAGATTTAATTAAAGAGTTAAAAAATCTTTCCGAA
GACGTTAAATCGAAACAAGAACTGGTTAAAGACCTCGAAAGCGAGTTAAA
AACGCAACGTACCAATTACGATCAGAAATTAAACGATTTACAAAGTTTGG
AAAGCGAGTTTGTCGAACAGGAAGAAATTCAAATCCGAATGGAAAAAGAT
TTAAATGATCGTGAGGAACGAATAGAACAGTTAGAACATGAAATTCAAGT
CGAAAGAGACACGATAAAATCGAAAGAAGATTTAATCGAAGAATTAACGA
TTCAACTCGAAGAGCTTAAGGAAACTTTGGAAATGAAAGAGGAGAAGATA
TTGGAattggaaaaagattttgagAACGCAAGTGTTGCTCTTATGAACGG
TATCAAACAAATGGAACAACAACCTCGATCTGGTGAAGATATACACGAAC
TGGAGGCTCAATTACAAGATAGTTTAGATGAGCGCGATGGTTTTATGAAA
GAGATTAAGAAACTCGAACGAGAgctaaagaaaatcaataatagCCTGGA
GGAAGAGAAAAATCAGACACGCAGGCTAGGAATTAAACTTGAGGACGCAA
ATTACGAGATCGGGAGATTAAGACAGGAACTTATCAACTCGCAACTGGAG
AACGAAAAAATAGTGGAAGAAAACGAAGATTTAGCTGTGGATAACGAGGA
TTTGATCAAAGAGCGAGATGAGATTATACAAATTTACGAGGAATTGTATC
GAGAGAGTGAACGATTAAAACACGAGGTCAAAATTTGGAAGACTGTGTTC
GATAACAATAAAGATAACATTGATGAGGATGAAATGCGAGAAGCGATGAG
CGAAGGTGACGCACTTGAGGAGAATGGGAAGGAGTCTTCAGATGAAGAGg
agCTGATAGAACTCGAAGAAGACCAATCATTGCTTGTTCCTCCACGTGAT
GATATTCGAATCAAAGTCACAGATGTCTCAAAAGCTTTCGaacaaagtga
agaaatttcaaGAGGTAAATTTGGTAAAGTATACAAGATGGTAGCCCGAG
CTACGGGTGACACCTACGCAGCAAAATACATCAAAGTCACACCCAAACTT
CGCGAAGACGTTCTGAACACGATTGACATTATGAAGAAAATACATCATGT
TCGGTTGATGAATTTGTTTGATGTTTACGATCTGGGATCACAGATTGTCA
TGATTCTAGAATATGTTGGCGGAGGTATGTTATTTGAACGTATCGTGGAA
AAGAATTCACTTACAGAAGCGGAATGTGCTTTATACATCAAACAAGTCTT
GCAGGGATTACATCATCTTCATCTACAAAATATCGCACATCTTGAGTTGA
AGCCTGAGAATATTATTTGCGTGAACCGTAGCAACATGGACATCAAAATC
ATTGACTTTGGATTGGCTAAACAATTGTCACATGACAAACCAATCAAGAT
TACCGCTGGGTCGCCGGAATTTGTGGcaCCGGAAATTTTGTCATTCGATC
CTGTTTCCCTGAATAGCGATTTATGgAGTGTTGGTGTTATTACGTACATT
CTATTGTCGGGTATTTCACCATTCATTGGAGATGATGACAACGATACATT
GATGAATGTTTCCTGTGGTGAATACGAATATGATGACCAAGCGTTCGGTC
AAATCACCAATGATGCGAAATCCTTCATCGATAAACTGCTTGTCTCGAAT
CCTAAGAAAAGGGGAAATGTTGGTCGCTGCTTGCAACATCCTTGGATAAA
TtccaaCTGGCAATCCAAACAAAGTAAAATCAACCTTGGCAACTTGAAGA
CGTTCTTGAAGAAACACAAAGAAAAGGTTAACGTCAGTGCTAGAGGTGCC
ATCCGTCGGTTCAGTTCATTTGGAGTGGGCGGTCACGCCCATGGTTTATT
GGGTGGACGAGGTGGCTCTCCCGTCAGTGTCGGTAGCAGCCGATCGCCTT
CAAAACATTTATTGGTACCGAACGCCCTTCAATCATGCGTGataaatgaa
gatgaagaagaagaggaagaagCAGATGAGAATCAAAACATCCGGAATAT
CAATGATTCTTTACGGAGTGGCCCGATTTTTACTGTAACAAAGGAAGCGG
AAAGGCCCCCTTCCGGTGATTATGGTGAAGCATTACCGGATTTCAATACG
GATACACCAGACGGGTTGAGAAATTATTTACAGCAAATGATTAATACTGG
GTTATTACCGGGCCGTTCTGGACCACCGGACATGTCTGAACAGTTTAGTG
ATGAAGATCATTGAAGGAATAAGAGGTCGGATGATAAAGTAGATTTCCAG
ACAGCGCGAAACGTTCAAACAAGGTATATCAAACGTTCCTAACGTCTTTT
AACGTTA
Run BLAST on NCBI

transcript from alignment at sc0000001:2079465..2092531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000238 ID=TCONS_00000238|Name=TCONS_00000238|organism=Clytia hemisphaerica|type=transcript|length=13067bp|location=Sequence derived from alignment at sc0000001:2079465..2092531- (Clytia hemisphaerica)
AGGATAAAATGGTAAATCGATAAGATATTTTTAGAAACATTTTCTTAAAT
GTACCTACTGCTGATCTGATATATTCCCATTTGTCCACTATTTCTCTCAG
TTTGAACCACAAATGATTTTGTAGTTAAGAGATGCTGGCTAAATCGATCT
GTCTAGTTAAGGTGCAGTCCGCAGTGCTGATGAGTCCCAATAAGGACAAA
ATGCATATACTGCTCTGCTACTCAATCTCCTGAATTAATATATTTGGACA
GAAATTCTTATTTCTTCACGCATGCATGAGAGGACGGCTGGTTGTAGGTG
CAGATATGTGATTCAATGCTGATTGAACCTCAAATTTGAACATTTGAAAA
GACTGTCTTATGGGTGGGGATCGCAGAGTGGTGGATCTCAGGGGGTTCAA
AACATAAGACGAGGAGTCTTTCATTTCCTTACAAGGAAGATGGATAAAGA
AACACTCTGTATATCTTTCAGTGGGTGTAGAAACCATTTCCCTAGGATAG
GCTTAATAGCTTGTTGGTTGCTACATATATGTCAATTTTATACAATCATA
TTTTTCTGTTTACACGTTTATTTTTTTATAAGAACATCCAATATTTTTTA
AGCTTTTGAATTTTCTTAACTTTTGACTTTTAAGCGTAAAAATTTTCTTA
ACATGTTCTTTGTGTTCGCCATTTTTTGAGTATTTTTGTCCATTTTTTTT
TCGGGAGTCTGCAAAGCCTCAAAATGTTCTTAACTTTCTTAATATTTTGG
TCATCAAAGCCTTATGTTCTTATGTAGTTTGTTTTTATATATAAAAAACG
TGTATTCATGAAGAGTTTGGAACTTTCCTCAAAACCTTTTACTTCTTGTC
GTTATAGAAAAAGACGGTTCAAACAAAGTCCGTGATATCACCACAAATAC
GACACAACCCAAGTGGGCCATTCACACTGCAGATGATAAAGAGTGGAAAA
GTGATTTTAGTGCAAATAACAACTTGGTTTTAAGTCCAACAGAAAATGGT
GACGGTACCCAATCTTCTGGATTTCCAAAAGCTTCTTTATTAAAATACGA
AATCAGGCATTTAACCAATTTAAAACAAATTGAAGGTCCTGAACAATTTT
TATCTAAGAATACGAAAAATCCATCGGTCCCGATTACCGAGCAACGAGAA
AACGAAAAAGCCGACGGTAAAAGCGACTCGGAAGACGAGAATATGACCGA
ACGTTTACGATCAACTCGGTATTCGAGTAGTAGAAACTCGGATGATTTAC
TCGGCCGTTCTTCTTACCGTTCAACCCGAACTTCTTACTCAGATGACATT
GGTGGATTAACACGTGGTACTAGCGCAGGCAGTAGCCGATACCGTAGAAG
CGTACTAGACGACCCGCTCGATACGTACAGAAGTAGCCGTAGCTCGAGAC
GCTTAGATGATTATACACCAACGACTGATTATTCAACGACGTCATCTTCC
AGATACGACCGTCCATACCGTAGTACCACGTCTGCAGACGAAACTCGCTC
TTATCGGACAACGTCTCGCCGTACACTTGATGATCCGGTTATAGAATCAC
CGAGACGTTCTCGACGATCAAAAGTGAACGGTATTGACACAGCGATAACG
ACGACATCTGTTACAGCCACGGTAGATGGAGACTGTAATAAGTGTAAAGA
AAAACAAGAAAGAATAATCCAATTAGAAAATGATAAAAATAAAGAGTTTG
AAAAATGTAAAGAAAAGGATTTAAGAATTGAGGAACTAGAAAAACAATGC
TCTAGGGACTCTGAAAAACGGAAGGAAAAGGATGAACGAATTCGAGATTT
AATTAAAGAATTAAAAAATGTTTCCGAAGACGTTAAATCGAAACAAGAAC
TGGTTAAAGANAAGATTTAATTAAAGAGTTAAAAAATCTTTCCGAAGACG
TTAAATCGAAACAAGAACTGGTTAAAGACCTCGAAAGCGAGTTAAAAACG
CAACGTACCAATTACGATCAGAAATTAAACGATTTACAAAGTTTGGAAAG
CGAGTTTGTCGAACAGGAAGAAATTCAAATCCGAATGGAAAAAGATTTAA
ATGATCGTGAGGAACGAATAGAACAGTTAGAACATGAAATTCAAGTCGAA
AGAGACACGATAAAATCGAAAGAAGATTTAATCGAAGAATTAACGATTCA
ACTCGAAGAGCTTAAGGAAACTTTGGAAATGAAAGAGGAGAAGATATTGG
AATTGGAAAAAGATTTTGAGAACGCAAGTGTTGCTCTTATGAACGGTATC
AAACAAATGGAACAACAACCTCGATCTGGTGAAGATATACACGAACTGGA
GGCTCAATTACAAGATAGTTTAGATGAGCGCGATGGTTTTATGAAAGAGA
TTAAGAAACTCGAACGAGAGCTAAAGAAAATCAATAATAGCCTGGAGGAA
GAGAAAAATCAGACACGCAGGCTAGGAATTAAACTTGAGGACGCAAATTA
CGAGATCGGGAGATTAAGACAGGAACTTATCAACTCGCAACTGGAGAACG
AAAAAATAGTGGAAGAAAACGAAGATTTAGCTGTGGATAACGAGGATTTG
ATCAAAGAGCGAGATGAGATTATACAAATTTACGAGGAATTGTATCGAGA
GAGTGAACGATTAAAACACGAGGTCAAAATTTGGAAGACTGTGTTCGATA
ACAATAAAGATAACATTGATGAGGATGAAATGCGAGAAGCGATGAGCGAA
GGTGACGCACTTGAGGAGAATGGGAAGGAGTCTTCAGATGAAGAGGTAAG
GAGAATTTGGTATTTGATCTTCCATCTTACGCTTCTATCCATCCTGGATC
CTAGTACCCCTCGTGGTTCTTTCAAAAGGGGGAAGGGGAGCTTACTTGAT
TTATCGATAAAGAAATAGAACAGGAGTTTTCCAACTAACCGGGCTTACCT
GTTATACTCGGGTATAATCGGAATCCCAGTTAAAACATTGCAATGGTGCA
TCTCATGAATTACTGCCGAAAACGGGTTCACTTATATTCATGATATGCAC
CATTGCAATGTCTTCAACGGATACAACAGCTGATTGGTTGAAAGTGACGT
ATTGACTGATTTTACGTCACTTACAGCCAATCAGCTTTTGGGTCCTCAAT
GTAATGTCAGAAGACAATGCAATGGTGCATATCATGATTACTACACTTGA
AGCTCTCTAATTCGACGTACTAAGTCGCCATTGACTTAGCTACCGTAGTA
CAGTGGTAGAGCATCTGGCTACGGTTCGCAAGGTTGCGGGTTCAACCCCC
AGCCGGGTCATACCAAAGATTCCCAAAATGGTACTTGATGCCTCTCTGCT
TGATGCTCAGCAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAGCTATCGAAAGAGGAGCCTTCGGGTCGCCTCCGA
CTGCGGTCGCAGACTTACTTACTTAAGTCGCCATCAACAAGTAGGTTACT
CTCCCAGCAGCAACTGTAGTACTACTTTACTACTAACCAGCGTATTCTTT
TTATTTTCAGGAGCTGATAGAACTCGAAGAAGGTAAGTGATTCTGTATTT
TTTTCCTATCAAAAAAGAATATTGACCCTTAAAGAGAAAAAAGGATTTCT
TAGGTGTAAAAACTGTACTCTTACCGCTCATAGATACCCAGCAGCAATCT
TTCCTATATATCTAAATTCTTGATATGCGAACGTATCTTTTCTAACGTAA
ACACCCGAAAAAAGCAGGGATTTGACCCCTGTTTGTTACTAAAAATAGAA
ACAAAGTGGAAAAAATTCGGCCTTTTTGGGGGCTTTCCTTAGAAAATATG
AAGATTAACTCTTTAATCTAACAGGGACATATTTGTTTACTTCTAGACCA
ATCATTGCTTGTTCCTCCACGTGATGATATTCGAATCAAAGTCACAGATG
TCTCAAAAGCTTTCGAACAAAGTGAAGAAATTTCAAGGTCTGTTTAATCT
TGCAAATTGATGTCATTTTTTAATATTTTCAATTAGTTTTAGCCAATGAA
CGGAGAACCGTAATTATCATCAAAATTTTTATCAACGCTTCTTGGCATGT
TCTGAGCATAGACATAGTTCGTTTCGTGTTTTTCAATTTTTGAATTAGCA
CATAAATTTATTGATATTTGCTTTAGATAGATAGAGATGATATTTTACGT
GGATAGCCCAGTAATCTAGGACTTTTAGACAATCTTTCGATTGTTTTCAC
GGGGTCCACGGCCAGCCGGCTCGGCTATCTATGAACTGAACGTTGGAAGG
AGCGGGGATTTGAACCACGAATCCCTGGTTTGAAACGCTGACGCCTTTGA
CCACTTGGCCATCGCTAATTTTACTCACTGATTGTGAGTTGCAATATATT
GACAACAAAAAGGATCTTCTTGAAAGAAATTACATAGGTTAGGACGATAG
TACATTTTCTCCATCCCGGACATGGGAATTTCGATTCCTCCCGAGAAGTT
TTAGAAATATTTTCTACAAGCTGTCAGTTACATTTATTTCATTTTAAATC
TTTCAGAGGTAAATTTGGTAAAGTATACAAGATGGTAGCCCGAGCTACGG
GTGACACCTACGCAGCAAAATACATCAAAGTCACACCCAAACTTCGCGAA
GACGTTCTGAACACGATTGACATTATGAAGAAAATACATCATGTTCGGTT
GATGAATTTGTTTGATGTTTACGATCTGGGATCACAGATTGTCATGATTC
TAGAATAGTAAGTTTTCCTATTTCAAAAATTAACTTTTTTGGCCATTGTC
GTGTTTTAGGCCAATAAAAAGAGGCGATTTATAAGACGCGGGATTTTCAC
GACCAACTAAAGTCTCTAGGCCAAACAACAAACTTTTTCTATCTTTAAAG
ATTTCTAAATATCGTACACGAAAATCCTTTGCCTATGAACTTACATCCGA
AAATGGTCATGTTTTCGTGTATATTAGAGCCCCCTCTTTTCCCAGCTGCC
ACACAGAATGTCATAACACGTCGTTAGATGACATTAAAATAAGGTTTAAT
ACAAAAAAAGGATCCTATTTATTGAAAGTCTTCTTCTCCAAACATGTTCG
TGACCAATCAACAATTTACGTAAGACCTGCATTGTGGTGGGCAACAGCAT
CCTAGGGTATATCAGGGAAGCAATAGAGATTTCTAACATTATGTAAGCAA
ACCTTCGAATCTTTAGAGGCAATCCCTTACGCAACTCGAACGTTTGCTAC
CGGTTTTTGTCAGTAAGGGCAAATTTTTAACAGTTTTTCTCTGGCTTAAA
TTTTCCACGGCTGGGGTTTTACCGTAGAAAATATTACGTCATAAATTTTT
TCACTGTTTTTCTATTCAGTGTTGGCGGAGGTATGTTATTTGAACGTATC
GTGGAAAAGAATTCACTTACAGAAGCGGAATGTGCTTTATACATCAAACA
AGTCTTGCAGGGATTACATCATCTTCATCTACAAAATATCGCACATCTTG
AGTTGAAGGTATGACCAATTTTTATTACTTCAAAAATTCTTCATTGTTCG
CAATCTTAGGTTTATCTTCCACAAAAATGGTATATCTAGTATTGCAACTT
TTCAAACCCGTCTAGTCTGGGTGTAGCCTGTCCTGTCAGTAAAAAAAACT
AGCACATCTGGTATTGAAGACAAGGTTGAAGGTATCACCGATTTTGTATT
TCCTTTGAAAAAATTTCATTTCTTAATTCAATCTCTCACAATTGATGACA
TATGCACGATGTCTCAACTTTTGAAATCAGTCTAGTTAAGATAAAAATGA
ACTCCGTCTTGTTAGTAAGAGGGGTTTTGTTCAAATGACCCAACCACAAA
ATACTGAAATGCCGGTAGTTTTTTCTTGAAAAGGTTCCTCAAATACACCG
ATCAAAAATGTTATGATGAGTTTCGGAATACCAGAAAATCGGCCTTTTGA
TACCGAAATACCGGTCATTTTTTCGTCAAACAACGAAATATACCGGCCAA
TACTGGATTTTTTTCAATGGAAGATATCTAAAAATTTTTTCCATTTTAAC
CGTATAGCCTGAGAATATTATTTGCGTGAACCGTAGCAACATGGACATCA
AAATCATTGACTTTGGATTGGCTAAACAATTGTCACATGACAAACCAATC
AAGATTACCGCTGGGTCGCCGGAATTTGTGGGTAAGTTATGTGAAAATGA
AATCCATTTTTTTCCTTCGTCTTTCTTTTCTTCAGCGTTTGGGTAATCAA
ATAACAGATAATCCATTCTGGGCATACCACGCTCCGTTCTAAAGAAATAT
GATGAATGTAACGATCCTACCTTGTTGATCAGCCAAAACAATCAAAACCG
CGTAGCCTTTTGCTTGAAAGCGAAAGCGAAAGTGACCGCGTAGCCTTTTG
CATGAAAGCGAATGCGAAAGCGAATGGGTGTTAATGTTTATACGAACGAA
GTTTGTTTTGGTGTGATTGTTTTGCTTTAGCACCGCTTCTAAAAGCTCAT
TAATATTCATCCAAAATCTGGATTAAAAAGATCAAAGTGCTAGCCTGGGC
AGAATCTCTTACAGTACTATGACTTTTAGAGTGAATACGTGCCAGCGTGG
AGTAATCAGATTCTGATCGGAGATAAGCGTTTGGGATGGGTGTGCATGCA
CAATGGGAATAACCGAAATAGAAACATTGTCATCATTCATAAAAAATTTT
TTCTTTACAATTATAGCAACTAAACAGAAAAAACAAAACCGTCCTTTAAT
AATTTTCATTCGAAAAGATTAACTCTACTGGATTAGATAGATCAAGACTA
CCCCCGGGCAAAAACCTCCATAACCCCGGTAGCCGAAAATGGGTNTTCAC
TTATTTTCTAATCGTTGAACCGAAAATAACTTTATTTATTTACTGCACCT
TCAGATAAACACACGGAAAGACAGAAAAATTTGAGAAATTTTGATATTTT
TTGAGACAGGTTTTGACCACTTTTATTTAGCTTAGTAATTCATCGTTTCA
AGTGTGTAGACTAAAAGCATGCGAGAAGCCTAAATGGAAACTACGTTTAA
AGTAAGCAAAATTAAAAGCCACCGAAAAAAAAAATGCCTTCTATAAACCT
AAGTTCCTCGAAGTATATAATAAATTCTCTAAATCTTCCGATATGTATCT
GTTTTTGACCCCGACTGATTTCCATCTGCCGTGTTTCATTATCAACCGAN
NNNNNNNNNTGCCTTCTATAAACCTAAGTTCCTCGAAGTATATAATAAAT
TCTCTAAATCTTCCGATATGTATCTGTTTTTGACCCCGACTGATTTCCAT
CTGCCGTGTTTCAATATCAACCGATCCGGAACACCAAGATTTGCAGCTGC
AAACGCTCCGCCCGAGGGCAAACTATGAACACCATATTGCTTTTGGTCCA
AACCTATGTCTTTTATCACCTTCTTGATATCGTCACGTACCGAACTGTAA
GAAATTGGCTGATCTTTATTCCATAGACGATTGTTTCGTTTGGATTTAGT
TACTCCTCTAAAAATAAAATTCTCAGAATAATTTTTTATGTTTGCCAATT
CGAGGTACCTTTCCAAACCTTTTACCGGACACAGGTTTGAATTAAGTCTC
GCAATGTAAACCCAGTGGCCCTGTCTGTATATGTCAGTTTTACTGCTTTG
GATAAAAATTGTAGCATGATCATGAAGGAATTTTATATCTGATCTTCTAA
GCTTTTGGCATTCATCGAACCGTAGAAAAGCTGAAAAGGATAGCAAGCAT
ATCGCTAAAGTCCTTGAATTTTTGAGGCTAGAACCAACGTCTAATTTTTC
AAAAATTTCTCTCAAATCTTCGACTACAAAATTTGTCTTCTTCTTTGGTG
TATACGCCAATAACCGTTTAAAGGCTTCCAATAGGTGCTTTACAATTGTA
GAATTCCCGATCAAATACCCCGAAATAGCATGAAAATGTTTTATGGCGCA
ATAAGACGCTTCCAAGACTTTCCCGATTGAAATTGGGACATCAGAAATAA
GATTAAATGTTGCTCTTGAGTAGGTAAAGGGTTCACTTCCTGGAAACTAC
GACTCCATTCTTCCCATTTTTGGAAATAAAACTGATACTTAGCCACGGTG
TTATTGCTTCTGGAATTCAAAAGAATTCCTGGTAATTGCTCAGAGAGACT
CTTTAGTGCTGGATCCTGGACATCAAAATAGTTTCCTAATACGGTTTCTG
AATCTGAGCTAAAAAGTAAAATTTTTTGTTAATTTTCTGCATTGAGAAGA
AAAAAACATTTATTTTTACCGAACACACGTTGATTGTCACACTTGTAATT
TTAAAGCTAGAATTGGGATTTCTAATTTTTCATTTCCCATCAGAGAACCT
TGGAATCATCCTTTTGTGATTAATGCGACTTGATTTGCAAAATATCTACA
ATCCTTGACAAAAGGCTTAAAAGAGCTATTATCCCTGATCAGAAAGGTCC
AAAAGGCTGCCGATGGCCAGAACGGTATTATTAAAGTCCCTGTTGTTCCA
GGTTTGGCTNTGCCGATGGCCAGAAGGGTATTATTAAAGTCCCTGTTGTT
CCAGGTTTGGCTGCTAGGAGATGTTTAATACACTTTGTTATTAAATAAAT
AGGTGGCACCATTAGAGCATTTTCCCCAGACCAATCAAAACTGAATGCGT
CTACTTTGAATGAAAATGGACAAAAGTATTTTGAGCAAAAACGTGCCCAT
TTAGTGTTAGAATTATCAGCAAAAAGATCTACAGAAAAAGGTCCCCAGAG
TCTATTTAAAAAGGAAAAGAATTCTTTTGAAATTTCCCAGTCATCATAGT
CAATACTCTTACTTACTGTGTCCGCATCTCCATTTAATTTTCTAGCGATC
CACGTAATTTTTAGAAAAATTCCTTTTGCCTTACACAAGTTATAAATTGT
ATTTGCTAAAAATTGTAGTTTTTCCTTATTACTTCCAACTTTAACAATTC
TTGCAGCGGCAATGTTGTCTGTGTGCCAGAGAACATTGTTCCCTTGTAGT
TTTGAATTGAAAGCATGCAGCGTAAAAGCTATTGCTAATAATTCCCTGAA
TGTTGAACTCTCGCCTTGTTCATGAGGCCATAAATTTCTGAAACTTATAT
CATTATCCGAGATTGCTCCTATTCCTTTGTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTGGTGTTTC
AGTTGTGATCGTTGATGCACTAGATTGCTTGAGCTTTTTCTCTCCAAATA
ATAAGCTTGAAAATGTTTCCATTTTTCCCACATACAATATACAAGAGAGT
TAGAACGACGTGTGATTAGTTTTAAAATGTCTACCATTTTTATTGCACGC
GAGAACAAGAATTTCAAATTGTTAATTTACAGAACGATAGCAAAGGCTAT
TATCTTTCGGATGCCGTAAATAAATTCACATATGTTAAGCTTTATTATGT
TCTTTTCTTTTAGCACCGGAAATTTTGTCATTCGATCCTGTTTCCCTGAA
TAGCGATTTATGGTAAATATTTCTCGTACCCCGAATTTCGAAGAGCAGAA
ACATTTAAGACCTTCTTGATTGATTGATAAATTTATGCTGGTTCGACCCT
TTCTAAACCTGATAAACCTGCTTATTGTCTGAAACTTCATCTAAATTTCA
CACATTCACGTAAACTTTTCTTTCAAATTTTACGCATCTATCTAGGTAAA
TAAGAAATCCCATTCGGGCAAATCTCAGATACCCCTTAGCAACGCCGAAT
TAACAAATATCCAAATATTTTATCTTTTTAGGAGTGTTGGTGTTATTACG
TACATTCTGTAAGTATTTTAATAAGCTTTCGTGTTTTAGTTAAAATTATT
CAGCGAAATCTAAAATCTTTTAACTGTTTAAGGAGAAGAGCTAAAACTTA
CCAAAAGACTGCAATCTTTTACGACGCAAGATGTCACGATGAAAATATTT
TTCCTGTTTTTTTAAGAAATTGAACAGTCGACTTATGACAGGCTAGCTCT
AAAGCTCTAAAACAGTATCTAATAACATAAAAAGTTGTATTATTTTCGGC
TCTATTCACATACTGAATTTCAAAGATATGTGACGTTTTTTGCAAACTTT
TGCGAGACTTTAGCTTAAGTGCTTGCGTGCAACATTGGGTACAAAGTCCA
AATATGCGTTTCCCGTAAATTTTATATGAAAAGTTATGGCTATTCTGTAT
GGAGGCTAAACTATAAATGTTCTAAATTATCAACTCTCCTTTCCTCCTAC
AACTCCGCATTGTCGAGTGCCTGATTCAATGACAACCACCTTCCCAGCAG
ACACACAACGTTGTTTCAACGCTAATCTAACGTTCATAAAACGTTAGGTT
AACTTTAGGAATAGCTTTATGTGCCATCTGGATTAGCTATCTTTACAACT
CAATCGCTTGCTTTATCCCCTAGACGTTCGAGTTATGGACACTTGACTGT
AATCATTTTTAACCAAATTATTTTTTTTCAGATTGTCGGATATTCACCGA
CATAGATAGTGAGTTTATGTTTTTGAGACTGGACTGTAATCATTTTTAAA
CAGAACATTTTTTCCTTTACTCTCTATTCAGATTGTCGGGTATTTCACCA
TTCATTGGAGATGATGACAACGATACATTGATGAATGTTTCCTGTGGTGA
ATACGAATATGATGACCAAGCGTTCGGTCAAATCACCAATGATGCGAAAT
CCTTCATCGATAAACTGCTTGTCTCGAATCCTAAGTAAGTGCAGTCTCTT
TCTTATTCGATGCTCTAGGGACCAAGAATTTTATTCGAATTAGAGAAAGT
TTCAAATTACACACATTTTATACTATTTCCCACATATTTTTGTTCGAATT
ATAGAAAATTGACAGCAATACAATGCCACTAAGGTTTTTTTATATCCTAC
AGATTTCTATATTTGTAGAGAAAAGCTCGAAAATCATCCATCAAATTTCG
CTTTCCTTTAAGTATTCAAGTCAATTTGAATGGCTTTAGTCTGTTGATAT
TCTCTAAAGAGTTTATAATTCTTCGTGCTAATAACTGTGGTTTACAATAG
GCTAACTAACGTTAAAAATTTGGTTATGCTTCTATTTTCAGGAAAAGGGG
AAATGTTGGTCGCTGCTTGCAACATCCTTGGATAAATGTGAGTTTTCTGG
CTAGTTATTACCGAACCAGACTTTAGTTTTTATAAAGAGGATCTAAGGCT
CCCTATCCCTCTATCTATGATATGCACCTGTTGTGATGTCTTCCAAGGAC
CCGACAGCTGATTGGTTGCAAGTGACTGATTTTACAAATCAGCTATTGGA
TCCATGATGTAATGTCAGAAGACACTGCAATGGTACATTTCATGAATATA
TTCCTATCATCCTTCAAAACGTGGGGAGATTCGGCTTCGAGTTTACCAGG
AAGGATTTACGTCAAAATGCCTGAAGTCTTTGCATTGGTCCAAATAATTT
TGACGTCATTTCCTTGTATTCATTACCAATTCCCTCAAAACCCAACCTGG
TTGTTCATGTTCGGTAGCACAGATATTCGAGGCATGGACTTTTCAGCCTG
TTAGAATCTTGCTGAGATTCACTTTTTTCAAAAATCTTTTATTTTTTCAG
TCCAACTGGCAATCCAAACAAAGTAAAATCAACCTTGGCAACTTGAAGAC
GTTCTTGAAGAAACACAAAGAAAAGGTACCTTTTTTAAACCTTTTGGCTA
AACTTATCTGATTCCATTTATTGTGCCTAATTTGATCTCAGACTCCTGAC
CAAGCATTGTAACACTTTCAGTGTTGTCGCCCTTATATAAATGTTTCATT
CGCCTCTAAATAACATTTGAATTTCGTTTTCTCTAGGTTAACGTCAGTGC
TAGAGGTGCCATCCGTCGGTTCAGTTCATTTGGAGTGGGCGGTCACGCCC
ATGGTTTATTGGGTGGACGAGGTGGCTCTCCCGTCAGTGTCGGTAGCAGC
CGATCGCCTTCAAAACATTTATTGGTACCGAACGCCCTTCAATCATGCGT
GATAAATGAAGATGAAGAAGAAGAGGAAGAAGCAGATGAGAATCAAAACA
TCCGGAATATCAATGATTCTTTACGGAGTGGCCCGATTTTTACTGTAACA
AAGGAAGCGGAAAGGCCCCCTTCCGGTGATTATGGTGAAGCATTACCGGA
TTTCAATACGGATACACCAGACGGGTTGAGAAATTATTTACAGCAAATGA
TTAATACTGGGTTATTACCGGGCCGTTCTGGACCACCGGACATGTCTGAA
CAGTTTAGTGATGAAGATCATTGAAGGAATAAGAGGTCGGATGATAAAGT
AGATTTCCAGACAGCGCGAAACGTTCAAACAAGGTATATCAAACGTTCCT
AACGTCTTTTAACGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000130XLOC_000130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000238-exon-sc0000001-1575043694:2092521..2092531TCONS_00000238-exon-sc0000001-1575043694:2092521..2092531Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2089787..2091674TCONS_00000238-exon-sc0000001-1575043694:2089787..2091674Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2088550..2088571TCONS_00000238-exon-sc0000001-1575043694:2088550..2088571Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2088145..2088235TCONS_00000238-exon-sc0000001-1575043694:2088145..2088235Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2087375..2087575TCONS_00000238-exon-sc0000001-1575043694:2087375..2087575Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2086624..2086762TCONS_00000238-exon-sc0000001-1575043694:2086624..2086762Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2085951..2086074TCONS_00000238-exon-sc0000001-1575043694:2085951..2086074Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2082320..2082368TCONS_00000238-exon-sc0000001-1575043694:2082320..2082368Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2082024..2082050TCONS_00000238-exon-sc0000001-1575043694:2082024..2082050Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2081098..2081250TCONS_00000238-exon-sc0000001-1575043694:2081098..2081250Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2080695..2080740TCONS_00000238-exon-sc0000001-1575043694:2080695..2080740Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2080157..2080231TCONS_00000238-exon-sc0000001-1575043694:2080157..2080231Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1575043694:2079465..2079995TCONS_00000238-exon-sc0000001-1575043694:2079465..2079995Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2092521..2092531TCONS_00000238-exon-sc0000001-1510915933:2092521..2092531Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2089787..2091674TCONS_00000238-exon-sc0000001-1510915933:2089787..2091674Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2088550..2088571TCONS_00000238-exon-sc0000001-1510915933:2088550..2088571Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2088145..2088235TCONS_00000238-exon-sc0000001-1510915933:2088145..2088235Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2087375..2087575TCONS_00000238-exon-sc0000001-1510915933:2087375..2087575Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2086624..2086762TCONS_00000238-exon-sc0000001-1510915933:2086624..2086762Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2085951..2086074TCONS_00000238-exon-sc0000001-1510915933:2085951..2086074Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2082320..2082368TCONS_00000238-exon-sc0000001-1510915933:2082320..2082368Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2082024..2082050TCONS_00000238-exon-sc0000001-1510915933:2082024..2082050Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2081098..2081250TCONS_00000238-exon-sc0000001-1510915933:2081098..2081250Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2080695..2080740TCONS_00000238-exon-sc0000001-1510915933:2080695..2080740Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2080157..2080231TCONS_00000238-exon-sc0000001-1510915933:2080157..2080231Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1510915933:2079465..2079995TCONS_00000238-exon-sc0000001-1510915933:2079465..2079995Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2092521..2092531TCONS_00000238-exon-sc0000001-1491911889:2092521..2092531Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2089787..2091674TCONS_00000238-exon-sc0000001-1491911889:2089787..2091674Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2088550..2088571TCONS_00000238-exon-sc0000001-1491911889:2088550..2088571Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2088145..2088235TCONS_00000238-exon-sc0000001-1491911889:2088145..2088235Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2087375..2087575TCONS_00000238-exon-sc0000001-1491911889:2087375..2087575Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2086624..2086762TCONS_00000238-exon-sc0000001-1491911889:2086624..2086762Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2085951..2086074TCONS_00000238-exon-sc0000001-1491911889:2085951..2086074Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2082320..2082368TCONS_00000238-exon-sc0000001-1491911889:2082320..2082368Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2082024..2082050TCONS_00000238-exon-sc0000001-1491911889:2082024..2082050Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2081098..2081250TCONS_00000238-exon-sc0000001-1491911889:2081098..2081250Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2080695..2080740TCONS_00000238-exon-sc0000001-1491911889:2080695..2080740Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2080157..2080231TCONS_00000238-exon-sc0000001-1491911889:2080157..2080231Clytia hemisphaericaexon
TCONS_00000238-exon-sc0000001-1491911889:2079465..2079995TCONS_00000238-exon-sc0000001-1491911889:2079465..2079995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2079465..2092531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301839	0	0.472371	0	2.4643e-10	0.00135832	8.41011e-08	1.15562	2.36266	3.08461	1.25771	0.652033	0.431034	0.484011	8.10543e-09	6.94052e-09	9.07228e-09	0.279175	0.92351	0.853555	0	0	0	0	0.609753	0.0150271	0	0	0	1.09239e-07
Blast
[Close]
BLAST of TCONS_00000238 vs. Swiss-Prot (Human)
Match: MYLK (Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4)

HSP 1 Score: 268.085 bits (684), Expect = 2.593e-73
Identity = 127/302 (42.05%), Postives = 209/302 (69.21%), Query Frame = 1 
Query: 1975 VSKAFEQSEEISRGKFGKVYKMVARATGDTYAAKYIKV-TPKLREDVLNTIDIMKKIHHVRLMNLFDVYDLGSQIVMILEYVGGGMLFERIVEKN-SLTEAECALYIKQVLQGXXXXXXQNIAHLELKPENIICVNRSNMDIKIIDFGLAKQLSHDKPIKITAGSPEFVAPEILSFDPVSLNSDLWSVGVITYILLSGISPFIGDDDNDTLMNVSCGEYEYDDQAFGQITNDAKSFIDKLLVSNPKKRGNVGRCLQHPWINSNWQSKQS-KINLGNLKTFLKKHKEKVNVSARGAIRRFSSF 2871
            VS  ++  E +  GKFG+V+++V + T   +A K+ K  + K +E++   I IM  +HH +L+   D ++  + IVM+LE V GG LFERI++++  LTE EC  Y++Q+ +G+ ++H Q I HL+LKPENI+CVN++   IK+IDFGLA++L +   +K+  G+PEFVAPE+++++P+   +D+WS+GVI YIL+SG+SPF+GD+DN+TL NV+   +++DD+AF +I++DAK FI  LL  + K R +  +CLQHPW+  + ++ ++ K++   +K ++ + K +   +A  AI R SS 
Sbjct: 1460 VSDFYDIEERLGSGKFGQVFRLVEKKTRKVWAGKFFKAYSAKEKENIRQEISIMNCLHHPKLVQCVDAFEEKANIVMVLEIVSGGELFERIIDEDFELTERECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVNKTGTRIKLIDFGLARRLENAGSLKVLFGTPEFVAPEVINYEPIGYATDMWSIGVICYILVSGLSPFMGDNDNETLANVTSATWDFDDEAFDEISDDAKDFISNLLKKDMKNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKYMARRKWQKTGNAVRAIGRLSSM 1761
The following BLAST results are available for this feature:
BLAST of TCONS_00000238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYLK2.593e-7342.05Myosin light chain kinase, smooth muscle OS=Homo s... [more]
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