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TCONS_00000232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000232
Unique NameTCONS_00000232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000232 ID=TCONS_00000232|Name=TCONS_00000232|organism=Clytia hemisphaerica|type=transcript|length=3136bp
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC
ATGCCTTATTTtataaagaattattttatgatattttttttttgtagatg
AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA
TGAGCTGgctaaaagtaacaaaatgACCACCAACTATCAGGTGGTCAGTG
AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC
CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA
TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA
ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT
GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG
ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC
TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA
TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA
CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC
TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA
AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA
GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC
ATCATATggaaatcgattttaaactgaTGAATGAGTCAGGACCACCTCAT
GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATagg
GCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGCACAAAAAAtgt
tacaaattttgaaagaacttCCCGAACCTGAAAAGAAGAAACCTGGTAAA
GATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCACTTTCTGTTTTT
ACTGTAATAATGTAATAATGTACAGAAAAGATattaagaaaatttacaaa
CTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTCAGCCAATCAAA
CAGTTTGtttattagattaaaagatATCTCTGCTACAAATCACACCAGAG
AATATCTGTgtatttaaaagttttcttgACTGTTCAAATCTTATGGAACG
CACGGTATAGGGATCTACgttaaaaatggatttttggAATCATAAACTGA
TTACCCCTTCAAAATGTGCCAAAACATgtataatttcagaaaaagtaGAA
CAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGGCCTTTAAGGCC
ACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGGACTTTACTGCT
CCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATACTCTTGACCTTG
TAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATCATCCCTCTTAC
CCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAGTTGTCTAAGAG
CAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAACATACTCTTCT
NTaagaattctcaaaaacctatcaagttacccctcatttgaaaggtaatT
TAATGTAGattgagaaaaacatcatgacTATGCATCAAAAATGAAGTGAT
AGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTTTTTTAGTGTAA
TCGTGTAATGTCTtaaaaaattcatacttttGCAATTAATTCNCATGTAA
TTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCTTAAGTTTATCA
TCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTCTTCTGAGTTAT
ATGGGCCTGAGATAAGTCTCCAATAATNgttcattatattttttggaaga
CCCACATGAAATAAACATAAGTGCTTATTTTCTACTGATATCATACATTT
TGAATCTACAggatcattttaaaaatttaaaaactataaAACCAANTGAC
TCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCTTCAGTTTTCTG
CTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGTGATTTCCAGTG
ATTTCTTTGGAGggttttataaactttttaaagttatttgGATTTGTTTG
CTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTCATACATGTACT
TANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGAATGCAGTATCA
TACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCACCTGTTTACAC
ACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGATGAGATTCCAAA
TCGAGGCTTCATTGGAGGATTTCAAAGCCATTGGATATGGTCAAACAAAG
AAAGCAGCCAAAACAAATTCAGCAACTAACCTATTGAAATGTCTTGGTAT
TGATTTAATCGAGTTGAGAAAAGAAAAGGGTGTAGCCAAGGTGGAAAGTG
ACGATGAAGATGAGAGTGAAATTATAAATATTGCACTCGATGCCCTCATG
ACGGAAACCGCCAACTTGAACCGGGCACCCGGAACTCCGGTCAAGCACAA
AATCCAACTTAGCAAAAGCAAACCAAGTGAGGTGGACCAATCTTTTCCGG
CTGCGTCTGCcaaacaaaaagttgaatacattGCTCGCAAGGAAGGATTT
CAAGTTTTGTACAATGATTTCGTCAATGGGGGTAAACCGGGTCAAAGCGA
CAACAATGAGTTTTCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAG
TTTTCCACGGAGCCGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCG
CGGAAGGCCTTCAATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGC
CGCTTCACCTAATAGTAAATAAGAAACGAATTGGATCTTGAAAGTACTTG
AAATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAGTCGGGTA
ACTTTTTGtcatttgttatttttgtttgtttttttc
Run BLAST on NCBI

protein sequence of TCONS_00000232-protein

>TCONS_00000232-protein ID=TCONS_00000232-protein|Name=TCONS_00000232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MNPQTNTNSNNTPSSILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHV
GHAGPFEGVGSSLKMARNAAASRALSDSFPGFHINPTVELNILSMKSREV
AVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRR
LWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEM
SKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPP
HVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQILKELPEPEKKKPG
KDFLNFFISSNNLHFLFLL
Run BLAST on NCBI

transcript from alignment at sc0000001:2015822..2021564-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000232 ID=TCONS_00000232|Name=TCONS_00000232|organism=Clytia hemisphaerica|type=transcript|length=5743bp|location=Sequence derived from alignment at sc0000001:2015822..2021564- (Clytia hemisphaerica)
GGCTTATACTTTTCTGTGTTATTGTTGTAATGCTCGAGTTTTCATCCCCC ATGCCTTATTTTATAAAGAATTATTTTATGATATTTTTTTTTTGTAGATG AATCCTCAAACAAATACTAACTCTAACAACACACCCAGCAGCATTCTCTA TGAGCTGGCTAAAAGTAACAAAATGACCACCAACTATCAGGTGGTCAGTG AAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACCTACATGTTGGC CATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAGATGGCTCGCAA TGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGGATTTCACATCA ACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTCGTGAAGTTGCT GTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCAACTACCTCACG ACATGATCAATATGATAGCTTATTTCTGTCACAACAATACCACAGTGGGC TGATGCACCGTGGTGGACCCCGAATGAACCACCATAAACAACGCCGTCTA TGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATTGGTGAAGGCCA CACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGCTTTGAGGGAAC TGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAACTTGAGATGTCA AAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGCAACCCTGAAAA GCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACTGGCCAACAAAC ATCATATGGAAATCGATTTTAAACTGATGAATGAGTCAGGACCACCTCAT GTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCACCAAATAATAGG TTTGTTCTTAAAAAATTTATATACAGGTTGCCTATATGTAATCGAATCGA ACTGATGTAAAGTTTATTTCAATCGAAGGCAAAAGCTTTTAACAATGAAG GGTGATAAATAATAAATAATAATTCTACAACCACCCATTGCTGGGTATGG TTGGACATAGAGCCATAACTCTCGTCTGTGAGGCCTACTCACTTCTGAGA GCCATGACTCTATGTCGAGCTATCAAAATTTTAGAAATTAAGTTTTCTTG CTTAAGGCAAGAGTGAAGTTGCTAAACTGTTGCTAAATTTTTGTTGTTGT CGAATGATGCAGAAGTTTTCCTGTACAACTCCCTGTATAAAAGAAAGAGA TTAGCCTAATTTGGTACATATTGTTATTCTTTCTCAAGATTAGATTATAG CTGTATTATCTTTGCCTTGAAGTCTTAAAACACTTACTGTAGTAATTTTG AACTTTTAAAGTCTTGAATCTTCCAAATTGTTTACTTCCAGGATGACTTT AATTCACCTTAAAAAATATCTTTATATATTTAACATTAGACTACTTTGAT ATTTTTTCAGGGCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGC ACAAAAAATGTTACAAATTTTGAAAGAACTTCCCGAACCTGAAAAGAAGA AACCTGGTAAAGATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCAC TTTCTGTTTTTACTGTAATAATGTAATAATGTACAGAAAAGATATTAAGA AAATTTACAAACTGTCTAGAAAATAAAGCATTTCAATCTGTGCAGTTGTC AGCCAATCAAACAGTTTGTTTATTAGATTAAAAGATATCTCTGCTACAAA TCACACCAGAGAATATCTGTGTATTTAAAAGTTTTCTTGACTGTTCAAAT CTTATGGAACGCACGGTATAGGGATCTACGTTAAAAATGGATTTTTGGAA TCATAAACTGATTACCCCTTCAAAATGTGCCAAAACATGTATAATTTCAG AAAAAGTAGAACAATTTCGGTAGAAACCTTTTTTGACTTCCCTACCGGGG CCTTTAAGGCCACGCCCACCTCGGAATNCCCCAATATCACAAGTCATTGG ACTTTACTGCTCCCCAATATCACAAGTTTTTTGACTGTACTGTTTCATAC TCTTGACCTTGTAAAGGAGAGTTGAGTTCCAGTGTTAGTGATTTACTATC ATCCCTCTTACCCCCAATTCCATGTATAACATTTCTAAGATCTCCAATAG TTGTCTAAGAGCAACAACGTCAATACTGAGGTAAGAGCTCAAGTTTTCAA CATACTCTTCTNTAAGAATTCTCAAAAACCTATCAAGTTACCCCTCATTT GAAAGGTAATTTAATGTAGATTGAGAAAAACATCATGACTATGCATCAAA AATGAAGTGATAGGTTGTAGAGTACATTACATTGCTCTTGAAAGAGGCTT TTTTAGTGTAATCGTGTAATGTCTTAAAAAATTCATACTTTTGCAATTAA TTCNCATGTAATTTTGGCATATTTCACTTCATTATACATTCTTTTGTTCT TAAGTTTATCATCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTC TTCTGAGTTATATGGGCCTGAGATAAGTCTCCAATAATNGTTCATTATAT TTTTTGGAAGACCCACATGAAATAAACATAAGTGCTTATTTTCTACTGAT ATCATACATTTTGAATCTACAGGATCATTTTAAAAATTTAAAAACTATAA AACCAANTGACTCTTCACTCAAACTTGCCATTTCTTTTTCAGTAAAGGCT TCAGTTTTCTGCTCCTTGACTTTATCAGCCTATTCAAGTTTAATTACCGT GATTTCCAGTGATTTCTTTGGAGGGTTTTATAAACTTTTTAAAGTTATTT GGATTTGTTTGCTCAAGAATGTCATGTTTTTATTGAGTACCATTTTCTTC ATACATGTACTTANAGAAGACCAAAGACTCTGGTATTGATCCCAGTTTGA ATGCAGTATCATACCTCCAGTGTATGATGAACATGAGAAAAGAGTCACCA CCTGTTTACACACTCAAAGCTGATGCTGGACCAACACAAAAAGGCTTGAT GAGATTCCAAATCGAGGTACCATTCCCTTTGTTATAGCTTTCTTTGGTCC TGTCCTTTATAGATTTATAGGTTTGTGTATACGTTTGTTGATTAAGAATC ACTCATCCTTTAATATTGTTGTATACTACTTTAGGACATATTTTATCCTC GAAAAAGTTTTGGCTTCTTATTTTATTGACGTAACGTCCGAAATTGTTAA AGGGATAATATAATGATATTTTACCTGTAAATTCCGTTCAAGGTCCTGAG CAAAATCTCTGAATCGTTCTGCCTTTGTTTGACTTTTAGCAGGAAACAAA TATAATTCTAACGTAAAAACCGTGTGAAAACCCATCTTTATAATTTCACA TAGTTGTTTCTCGACTTTGGAAAGGAGTTAAGCAAAAAGATTTGAAGGTT ATACTCAGGGCCATGTGAGATATCTACAGGCCAAATATCTCAAACCATCT GATCATCCCTTTAAAAGGCATTATCAATTGTAATTCACGTGTTAAATTTT TTAATACATGACACTCATGACATAGGGGTTCCGCATGGTTGCAAAGAAGA GCGCTTAGTCGACGCTCTTTAATTCGATTTCCAAGGGGAAATTGGATTTT CATCGAATAAGAGAGCGTGTCGAATAGTAGAGCGTTGTGTTTATCAGTGT TTCTTATTGATGGTAGCCTTCAATGTTATCGAAGGGAGTGTCAACTGCGA ATGGACTTTAAAATCTCCTTTAATTTCATGTACAGGCTTCATTGGAGGAT TTCAAAGCCATTGGATATGGTCAAACAAAGAAAGCAGCCAAAACAAATTC AGCAACTAACCTATTGAAATGTCTTGGTATTGATTTAATCGAGTTGAGAA AAGAAAAGGGTGTAGCCAAGGTATGGTTTTGAATTCTATTATTCTAGTCT GGTTGTTTTAATTAGACTAGAGTCTACTTCTGATTGAACTTTGCTTGCTG ATTTTTTTGATGACGCTGAGTCCAGTGATCAAGTTATATGAAAGTCATAA GTGGCCCTGGGTTAACCTATTCCTTATTCATACCAGTGCTTTTCGAAAGA TTTCTCGCCGTTCATGCTATTCATTATTATCAACTTTATCATCCCTTCCG TGGTATCTAGAACAATGCTATGAAGCGTTTGGGTGTATTAAAAGTAAAAG CTTTCGTACTAAAGATGCCTAGCTTGCTTAATTTTGTGAAATTAGAAATT GTTTCGAGTTATTTTTATGTTGAAGATGACGATTTACAGGTCAATATTGC CTTTTGTACTAAAAATAAATTTCGTTTATTAACAGGTGGAAAGTGACGAT GAAGATGAGAGTGAAATTATAAATATTGCACTCGATGCCCTCATGACGGA AACCGCCAACTTGAACCGGGCACCCGGAACTCCGGTCAAGCACAAAATCC AACTTAGCAAAAGCAAACCAAGTGAGGTGGACCAATCTTTTCCGGCTGCG TCTGCCAAACAAAAAGTTGAATACATTGCTCGCAAGGAAGGATTTCAAGT TTTGTACAATGATTTCGTCAATGGGGTTTGTATATTCGATTTAATACTAC AGTTGAGTCTCTTTAATTCGAAAGTCTCCTTAACTCGAACAAATTTGTGT TCCCCGTGCGTGTTCAAGTTATGGAGAGTCCATTGTATTTTCCAAAACTC ATACTGATATACGTCTATGTAGGTCCATGTCTTTTGGGATCCTAAAGATC TAACTGCCCTAAATTATCAGATAGTAATTATGCCTGGGCTAGCACTAAAC TTTAGTTCATGCCATGTGATAAATTCTGATAATGCCAGATGCCAAAACCT AAGAGTGGAAAAAGTAAGAGTAGATTAAGAACGACTAGGAACTCGGATTT CTCTTCACGTTTATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGC GATGCATTGTGGGATTGTTTCGGGGTATTACAATAGAAATCTCTTAGGAA TTTCTCGAGGGAATTCTTTTGTAATACCCCCGAAACAATCCCACATTGCA TCGATGTTTCAAAAAAATAAAAAGACTCCGATAAGGTCTATACTACTCAA TCTTCTCTTCCTCCCAGGGTAAACCGGGTCAAAGCGACAACAATGAGTTT TCATCTTCACTGGCCGTTTTCACGTCACCGCCGGAAGTTTTCCACGGAGC CGGTCAAACTGTAGAAGCGTCGAGAGAAGAGGCCGCGCGGAAGGCCTTCA ATTCTATGCAAGCTGTTCCAGGCGCCAACGATTCGGCCGCTTCACCTAAT AGTAAATAAGAAACGGTACATTTCTATTTCGTTCTCTCTCCTTGTTATAT TTTTTTCTCTCCATTCATTTTTCCCTTTTTTTCCTTTCCTTCAACAAGAT CACTTTTTTAGTTTANTATATTTTTTTCTCTCCTTTCATTTTTCCCTTTT TTTCCTTTCCTTCAACAAGATCACTTTTTTAGTTTAATCTGCAGAATCAT GATGGGGTACTCGGTTCCTTTCAAGATTAATGTCAGCCTTTTGGACCTCG ATTCATCAAATGCCAACATCTTCTAATGACTTCTTATAGAAAACCTTTGG TTTTGTAGATCTTTTTTCGGCACATATCATCAAATTAAGATGTTATTTTA ACTTCATGCTTTTCTTTTAATCTTCTTTCGTTCAGAATTGGATCTTGAAA GTACTTGAAATCGAAGAATCATGACATATGCAAAAAAGTATTAGGATCAG TCGGGTAACTTTTTGTCATTTGTTATTTTTGTTTGTTTTTTTC

Coding sequence (CDS) from alignment at sc0000001:2015822..2021564-

>TCONS_00000232 ID=TCONS_00000232|Name=TCONS_00000232|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000001:2015822..2021564- (Clytia hemisphaerica)
GGCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGCACAAAAAATG
TTACAAATTTTGAAAGAACTTCCCGAACCTGAAAAGAAGAAACCTGGTAA
AGATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCACTTTCTGTTTT
TACTGTAAATGAATCCTCAAACAAATACTAACTCTAACAACACACCCAGC
AGCATTCTCTATGAGCTGGCTAAAAGTAACAAAATGACCACCAACTATCA
GGTGGTCAGTGAAACTGGACCAGCACATCAAAAAACGTACAAGGTTCACC
TACATGTTGGCCATGCTGGACCATTCGAAGGAGTTGGAAGTAGTTTGAAG
ATGGCTCGCAATGCCGCTGCTTCTAGGGCATTATCTGATAGTTTCCCTGG
ATTTCACATCAACCCTACTGTTGAGTTGAATATTTTATCTATGAAGAGTC
GTGAAGTTGCTGTCTATCGGGAATTGGAGAGTATGTCTTTGCCAGGTTCA
ACTACCTCACGACATGATCAATATGATAGCTTATTTCTGTCACAACAATA
CCACAGTGGGCTGATGCACCGTGGTGGACCCCGAATGAACCACCATAAAC
AACGCCGTCTATGGAGAATGTCTGTAACAATCTGTGGCCGAACCTATATT
GGTGAAGGCCACACAAAATCAGAAGCACGGTTTAATGCTGCAGCCCATGC
TTTGAGGGAACTGAAACAGATTTTGTTAGAAAAAGCCAAACTGGTTGAAC
TTGAGATGTCAAAACAAAAGCAGGCAGCTGCTCAGAATGGAACTGAAGGC
AACCCTGAAAAGCCAAAAGCACCATGTTTCGTTTCTAAACTTCATGAACT
GGCCAACAAACATCATATGGAAATCGATTTTAAACTGATGAATGAGTCAG
GACCACCTCATGTTCGCGTCTTTCACATCAATTGTAAAGTGGGCGATCAC
CAAATAATAGGGCAAGGTATTGGCAAGAAGTCGGCAAAGAATGATGCTGC
ACAAAAAATGTTACAAATTTTGAAAGAACTTCCCGAACCTGAAAAGAAGA
AACCTGGTAAAGATTTCTTGAACTTCTTTATTTCGTCTAATAATCTGCAC
TTTCTGTTTTTACTGTAAATGAATCCTCAAACAAATACTAACTCTAACAA
CACACCCAGCAGCATTCTCTATGAGCTGGCTAAAAGTAACAAAATGACCA
CCAACTATCAGGTGGTCAGTGAAACTGGACCAGCACATCAAAAAACGTAC
AAGGTTCACCTACATGTTGGCCATGCTGGACCATTCGAAGGAGTTGGAAG
TAGTTTGAAGATGGCTCGCAATGCCGCTGCTTCTAGGGCATTATCTGATA
GTTTCCCTGGATTTCACATCAACCCTACTGTTGAGTTGAATATTTTATCT
ATGAAGAGTCGTGAAGTTGCTGTCTATCGGGAATTGGAGAGTATGTCTTT
GCCAGGTTCAACTACCTCACGACATGATCAATATGATAGCTTATTTCTGT
CACAACAATACCACAGTGGGCTGATGCACCGTGGTGGACCCCGAATGAAC
CACCATAAACAACGCCGTCTATGGAGAATGTCTGTAACAATCTGTGGCCG
AACCTATATTGGTGAAGGCCACACAAAATCAGAAGCACGGTTTAATGCTG
CAGCCCATGCTTTGAGGGAACTGAAACAGATTTTGTTAGAAAAAGCCAAA
CTGGTTGAACTTGAGATGTCAAAACAAAAGCAGGCAGCTGCTCAGAATGG
AACTGAAGGCAACCCTGAAAAGCCAAAAGCACCATGTTTCGTTTCTAAAC
TTCATGAACTGGCCAACAAACATCATATGGAAATCGATTTTAAACTGATG
AATGAGTCAGGACCACCTCATGTTCGCGTCTTTCACATCAATTGTAAAGT
GGGCGATCACCAAATAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000128XLOC_000128Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000232-proteinTCONS_00000232-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000232-exon-sc0000001-1575043694:2020666..2021564TCONS_00000232-exon-sc0000001-1575043694:2020666..2021564Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1575043694:2018549..2020104TCONS_00000232-exon-sc0000001-1575043694:2018549..2020104Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1575043694:2017695..2017829TCONS_00000232-exon-sc0000001-1575043694:2017695..2017829Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1575043694:2017040..2017279TCONS_00000232-exon-sc0000001-1575043694:2017040..2017279Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1575043694:2016300..2016497TCONS_00000232-exon-sc0000001-1575043694:2016300..2016497Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1575043694:2015822..2015929TCONS_00000232-exon-sc0000001-1575043694:2015822..2015929Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2020666..2021564TCONS_00000232-exon-sc0000001-1510915933:2020666..2021564Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2018549..2020104TCONS_00000232-exon-sc0000001-1510915933:2018549..2020104Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2017695..2017829TCONS_00000232-exon-sc0000001-1510915933:2017695..2017829Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2017040..2017279TCONS_00000232-exon-sc0000001-1510915933:2017040..2017279Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2016300..2016497TCONS_00000232-exon-sc0000001-1510915933:2016300..2016497Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1510915933:2015822..2015929TCONS_00000232-exon-sc0000001-1510915933:2015822..2015929Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2020666..2021564TCONS_00000232-exon-sc0000001-1491911889:2020666..2021564Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2018549..2020104TCONS_00000232-exon-sc0000001-1491911889:2018549..2020104Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2017695..2017829TCONS_00000232-exon-sc0000001-1491911889:2017695..2017829Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2017040..2017279TCONS_00000232-exon-sc0000001-1491911889:2017040..2017279Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2016300..2016497TCONS_00000232-exon-sc0000001-1491911889:2016300..2016497Clytia hemisphaericaexon
TCONS_00000232-exon-sc0000001-1491911889:2015822..2015929TCONS_00000232-exon-sc0000001-1491911889:2015822..2015929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2015822..2021564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.96586 4.581 3.09903 3.18387 36.6467 29.1245 17.4355 19.0308 13.2424 15.2873 13.0198 11.332 10.1468 9.99677 14.7485 15.8032 17.453 16.8622 7.99154 10.1057 7.97756 8.47561 9.02125 11.9475 11.8961 12.8014 8.66241 6.17849 10.2828 8.80188
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
Blast
BLAST of TCONS_00000232 vs. Swiss-Prot (Human)
Match: STAU2 (Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo sapiens GN=STAU2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.130e-28
Identity = 88/287 (30.66%), Postives = 147/287 (51.22%), Query Frame = 2
Query:  143 ILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHVGHAGPFEGVGSSLKMARNAAASRALSDSF----------------PGFHINPTVELNILSMKSREVAVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRRLWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEMSKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPPHVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQ 955
            ++ ELA+ N++   Y++++E GPAH K + V L +G    +E  GSS+K A+ A A++AL++S                 PG  I PTVELN L+MK  E A+YR L+    P    + +  +  ++ +Q+YH  +              +++ + +T+    + GEG T+  AR NAA  AL+ L+   +        E S Q     ++G + + +K      +S + E+A K +M + F+++ ESGPPH++ F     VG+    G+G  KK +K  AA  +LQ
Sbjct:   12 LVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQT-WESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG-SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYN--FRGMY-NQRYHCPV-------------PKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIP-------ERSPQN---GESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQ 270          
The following BLAST results are available for this feature:
BLAST of TCONS_00000232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STAU21.130e-2830.66Double-stranded RNA-binding protein Staufen homolo... [more]
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