TCONS_00000232-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000232-protein
Unique NameTCONS_00000232-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000232-protein ID=TCONS_00000232-protein|Name=TCONS_00000232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MNPQTNTNSNNTPSSILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHV
GHAGPFEGVGSSLKMARNAAASRALSDSFPGFHINPTVELNILSMKSREV
AVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRR
LWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEM
SKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPP
HVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQILKELPEPEKKKPG
KDFLNFFISSNNLHFLFLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000128XLOC_000128Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000232TCONS_00000232Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 86..186
e-value: 0.56
score: 7.8
coord: 224..289
e-value: 4.5E-18
score: 76.0
coord: 13..79
e-value: 1.3E-11
score: 54.5
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 15..76
e-value: 7.8E-11
score: 42.4
coord: 145..185
e-value: 9.8E-6
score: 26.1
coord: 225..288
e-value: 1.5E-12
score: 47.9
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 223..290
score: 18.253
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 12..80
score: 15.898
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 85..187
score: 10.63
NoneNo IPR availableGENE3D3.30.160.20coord: 86..188
e-value: 1.4E-14
score: 53.8
NoneNo IPR availableGENE3D3.30.160.20coord: 204..298
e-value: 9.3E-21
score: 73.2
NoneNo IPR availableGENE3D3.30.160.20coord: 1..82
e-value: 2.8E-18
score: 65.1
NoneNo IPR availableCDDcd00048DSRMcoord: 12..75
e-value: 2.96595E-11
score: 57.2823
NoneNo IPR availableCDDcd00048DSRMcoord: 224..288
e-value: 8.4255E-14
score: 64.2159
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 9..76
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 224..295
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 149..188
coord: 82..113

Blast
[Close]
BLAST of TCONS_00000232-protein vs. Swiss-Prot (Human)
Match: STAU2 (Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo sapiens GN=STAU2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.905e-33
Identity = 92/293 (31.40%), Postives = 152/293 (51.88%), Query Frame = 0 
Query:   16 ILYELAKSNKMTTNYQVVSETGPAHQKTYKVHLHVGHAGPFEGVGSSLKMARNAAASRALSDSF----------------PGFHINPTVELNILSMKSREVAVYRELESMSLPGSTTSRHDQYDSLFLSQQYHSGLMHRGGPRMNHHKQRRLWRMSVTICGRTYIGEGHTKSEARFNAAAHALRELKQILLEKAKLVELEMSKQKQAAAQNGTEGNPEKPKAPCFVSKLHELANKHHMEIDFKLMNESGPPHVRVFHINCKVGDHQIIGQGIGKKSAKNDAAQKMLQILKELP 292
            ++ ELA+ N++   Y++++E GPAH K + V L +G    +E  GSS+K A+ A A++AL++S                 PG  I PTVELN L+MK  E A+YR L+    P    + +  +  ++ +Q+YH  +              +++ + +T+    + GEG T+  AR NAA  AL+ L+   +        E S Q     ++G + + +K      +S + E+A K +M + F+++ ESGPPH++ F     VG+    G+G  KK +K  AA  +LQ LK+LP
Sbjct:   12 LVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQT-WESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG-SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYN--FRGMY-NQRYHCPV-------------PKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIP-------ERSPQN---GESGKDMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLP 276
The following BLAST results are available for this feature:
BLAST of TCONS_00000232-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STAU23.905e-3331.40Double-stranded RNA-binding protein Staufen homolo... [more]
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