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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=transcript|length=882bp acatctttttcttttcattttcaccGGGCATTTTCACTTTAAAACCCACA GTCGAATGAATAACACAACTTTAAATTTTGACGAAAGAAAAAATGTGACA AATAACTTGAATATCAAATGAGGCtattattgaaattcaattgtgCTTGA GCAAATATagaatgattgaaattttttctcaCGCAAGTTTGAATGAACCT TTATCGCGTTCAGCCACCAGTTCTCTGTTATTCGATTTCCGGAAATTCCA CAGTGCACTATTTTCTAAAGGTAACCATGGCGATATAAAACttaaagtga aatatttttaaccaatgaaaatgaagaacgaATATAATAGATTTCAATTC ATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAATGGC AGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTG GCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTT TCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGGAAGC ACACGCAACATGCCCTGATGGATACCGATGGAGATGTAACCGACCATGTC GGAAAACTTTGACACTCAGACATGGaacgattttcgcgaattggCACAGA ACCTCGATATCGGATCTTTTCTTTATGATCTACTTATGGTCGAAGAAGAT CAGTTGCGCCAAGGTTACTGATATTGTCGGAGTGAAAAAAGATCACGTGA TTGCCATGTTTCAACTGCTGCGAGAAGTTTGTAGCAACGACCTTCAAAGA AACCCAATTAGAATTGGTGGTGGTGGGGCCAATTTCGTTGTCCAAATAGA TGAAAGCCAATTTCATCACAGACGAAGAGtga Run BLAST on NCBI protein sequence of TCONS_00000225-protein >TCONS_00000225-protein ID=TCONS_00000225-protein|Name=TCONS_00000225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKMKNEYNRFQFIKSRSNRKLAHSTFTMAVAARQGFMRRWGGLLFGPDKA AIVHFLQGKGLVSVQKVCPNCQNNMHMEAHATCPDGYRWRCNRPCRKTLT LRHGTIFANWHRTSISDLFFMIYLWSKKISCAKVTDIVGVKKDHVIAMFQ LLREVCSNDLQRNPIRIGGGGANFVVQIDESQFHHRRRV Run BLAST on NCBI transcript from alignment at sc0000001:1763710..1764849- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at sc0000001:1763710..1764849- (Clytia hemisphaerica) ACATCTTTTTCTTTTCATTTTCACCGGGCATTTTCACTTTAAAACCCACA
GTCGAATGAATAACACAACTTTAAATTTTGACGAAAGAAAAAATGTGACA
AATAACTTGAATATCAAATGAGGCTATTATTGAAATTCAATTGTGCTTGA
GCAAATATAGAATGATTGAAATTTTTTCTCACGCAAGTTTGAATGAACCT
TTATCGCGTTCAGCCACCAGTTCTCTGTTATTCGATTTCCGGAAATTCCA
CAGTGCACTATTTTCTAAAGGTAACCATGGCGATATAAAACTTAAAGTGA
AATATTTTTAACCAATGAAAATGAAGAACGAATATAATAGATTTCAATTC
ATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAATGGC
AGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTG
GCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTT
TCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGGAAGC
ACACGCAACATGCCCTGATGGATACCGATGGTAATTATTATTTTTGATTT
AGTTTTTATCCAAAGACAATTACCGCTAGTTAAGCTTACCTAGGTTTTAT
TGTCTTTCAATTAAAGATACCCTAAACGGTTTGCGTGATTGCTTGAAAGG
GCCTTTTAGCTCCTTGCGTGAATTAAAGGGTGACTGGGGGGTATTAATAA
TTAAACGGTTTCTATATTACAAATTTGGGGCGAACCAGCTATGTGCTTTT
TTTACAAATTGACCTATCCGGCTGTTTATAATTTTTAGGAGATGTAACCG
ACCATGTCGGAAAACTTTGACACTCAGACATGGAACGATTTTCGCGAATT
GGCACAGAACCTCGATATCGGATCTTTTCTTTATGATCTACTTATGGTCG
AAGAAGATCAGTTGCGCCAAGGTTACTGATATTGTCGGAGTGAAAAAAGA
TCACGTGATTGCCATGTTTCAACTGCTGCGAGAAGTTTGTAGCAACGACC
TTCAAAGAAACCCAATTAGAATTGGTGGTGGTGGGGCCAATTTCGTTGTC
CAAATAGATGAAAGCCAATTTCATCACAGACGAAGAGTGA Coding sequence (CDS) from alignment at sc0000001:1763710..1764849- >TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000001:1763710..1764849- (Clytia hemisphaerica) GAGATGTAACCGACCATGTCGGAAAACTTTGACACTCAGACATGGAACGA TTTTCGCGAATTGGCACAGAACCTCGATATCGGATCTTTTCTTTATGATC TACTTATGGTCGAAGAAGATCAGTTGCGCCAAGGTTACTGATATTGTCGG AGTGAAAAAAGATCACGTGATTGCCATGTTTCAACTGCTGCGAGAAGTTT GTAGCAACGACCTTCAAAGAAACCCAATTAGAATTGGTGGTGGTGGGGCC AATTTCGTTGTCCAAATAGATGAAAGCCAATTTCATCACAGACGAAGAGT GATGAAAATGAAGAACGAATATAATAGATTTCAATTCATAAAGTCGAGGT CAAACAGAAAACTCGCTCACAGTACTTTCACAATGGCAGTAGCAGCACGA CAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTGGCCCTGACAAAGC AGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTTTCTGTGCAAAAGG TGTGTCCGAACTGTCAGAATAACATGCACATGGAAGCACACGCAACATGC CCTGATGGATACCGATGGAGATGTAACCGACCATGTCGGAAAACTTTGAC ACTCAGACATGGAACGATTTTCGCGAATTGGCACAGAACCTCGATATCGG ATCTTTTCTTTATGATCTACTTATGGTCGAAGAAGATCAGTTGCGCCAAG GTTACTGATATTGTCGGAGTGAAAAAAGATCACGTGATTGCCATGTTTCA ACTGCTGCGAGAAGTTTGTAGCAACGACCTTCAAAGAAACCCAATTAGAA TTGGTGGTGGTGGGGCCAATTTCGTTGTCCAAATAGATGAAAGCCAATTT CATCACAGACGAAGAGTGATGAAAATGAAGAACGAATATAATAGATTTCA ATTCATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAA TGGCAGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTT TTTGGCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATT GGTTTCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGG AAGCACACGCAACATGCCCTGATGGATACCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000225-exon-sc0000001-1575043694:1764270..1764849 | TCONS_00000225-exon-sc0000001-1575043694:1764270..1764849 | Clytia hemisphaerica | exon |
TCONS_00000225-exon-sc0000001-1575043694:1763710..1764011 | TCONS_00000225-exon-sc0000001-1575043694:1763710..1764011 | Clytia hemisphaerica | exon |
TCONS_00000225-exon-sc0000001-1510915933:1764270..1764849 | TCONS_00000225-exon-sc0000001-1510915933:1764270..1764849 | Clytia hemisphaerica | exon |
TCONS_00000225-exon-sc0000001-1510915933:1763710..1764011 | TCONS_00000225-exon-sc0000001-1510915933:1763710..1764011 | Clytia hemisphaerica | exon |
TCONS_00000225-exon-sc0000001-1491911889:1764270..1764849 | TCONS_00000225-exon-sc0000001-1491911889:1764270..1764849 | Clytia hemisphaerica | exon |
TCONS_00000225-exon-sc0000001-1491911889:1763710..1764011 | TCONS_00000225-exon-sc0000001-1491911889:1763710..1764011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000001 | supercontig | sc0000001:1763710..1764849 - |
Blast
The following BLAST results are available for this feature:
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