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TCONS_00000225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000225
Unique NameTCONS_00000225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=transcript|length=882bp
acatctttttcttttcattttcaccGGGCATTTTCACTTTAAAACCCACA
GTCGAATGAATAACACAACTTTAAATTTTGACGAAAGAAAAAATGTGACA
AATAACTTGAATATCAAATGAGGCtattattgaaattcaattgtgCTTGA
GCAAATATagaatgattgaaattttttctcaCGCAAGTTTGAATGAACCT
TTATCGCGTTCAGCCACCAGTTCTCTGTTATTCGATTTCCGGAAATTCCA
CAGTGCACTATTTTCTAAAGGTAACCATGGCGATATAAAACttaaagtga
aatatttttaaccaatgaaaatgaagaacgaATATAATAGATTTCAATTC
ATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAATGGC
AGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTG
GCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTT
TCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGGAAGC
ACACGCAACATGCCCTGATGGATACCGATGGAGATGTAACCGACCATGTC
GGAAAACTTTGACACTCAGACATGGaacgattttcgcgaattggCACAGA
ACCTCGATATCGGATCTTTTCTTTATGATCTACTTATGGTCGAAGAAGAT
CAGTTGCGCCAAGGTTACTGATATTGTCGGAGTGAAAAAAGATCACGTGA
TTGCCATGTTTCAACTGCTGCGAGAAGTTTGTAGCAACGACCTTCAAAGA
AACCCAATTAGAATTGGTGGTGGTGGGGCCAATTTCGTTGTCCAAATAGA
TGAAAGCCAATTTCATCACAGACGAAGAGtga
Run BLAST on NCBI

protein sequence of TCONS_00000225-protein

>TCONS_00000225-protein ID=TCONS_00000225-protein|Name=TCONS_00000225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKMKNEYNRFQFIKSRSNRKLAHSTFTMAVAARQGFMRRWGGLLFGPDKA
AIVHFLQGKGLVSVQKVCPNCQNNMHMEAHATCPDGYRWRCNRPCRKTLT
LRHGTIFANWHRTSISDLFFMIYLWSKKISCAKVTDIVGVKKDHVIAMFQ
LLREVCSNDLQRNPIRIGGGGANFVVQIDESQFHHRRRV
Run BLAST on NCBI

transcript from alignment at sc0000001:1763710..1764849-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at sc0000001:1763710..1764849- (Clytia hemisphaerica)
ACATCTTTTTCTTTTCATTTTCACCGGGCATTTTCACTTTAAAACCCACA GTCGAATGAATAACACAACTTTAAATTTTGACGAAAGAAAAAATGTGACA AATAACTTGAATATCAAATGAGGCTATTATTGAAATTCAATTGTGCTTGA GCAAATATAGAATGATTGAAATTTTTTCTCACGCAAGTTTGAATGAACCT TTATCGCGTTCAGCCACCAGTTCTCTGTTATTCGATTTCCGGAAATTCCA CAGTGCACTATTTTCTAAAGGTAACCATGGCGATATAAAACTTAAAGTGA AATATTTTTAACCAATGAAAATGAAGAACGAATATAATAGATTTCAATTC ATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAATGGC AGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTG GCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTT TCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGGAAGC ACACGCAACATGCCCTGATGGATACCGATGGTAATTATTATTTTTGATTT AGTTTTTATCCAAAGACAATTACCGCTAGTTAAGCTTACCTAGGTTTTAT TGTCTTTCAATTAAAGATACCCTAAACGGTTTGCGTGATTGCTTGAAAGG GCCTTTTAGCTCCTTGCGTGAATTAAAGGGTGACTGGGGGGTATTAATAA TTAAACGGTTTCTATATTACAAATTTGGGGCGAACCAGCTATGTGCTTTT TTTACAAATTGACCTATCCGGCTGTTTATAATTTTTAGGAGATGTAACCG ACCATGTCGGAAAACTTTGACACTCAGACATGGAACGATTTTCGCGAATT GGCACAGAACCTCGATATCGGATCTTTTCTTTATGATCTACTTATGGTCG AAGAAGATCAGTTGCGCCAAGGTTACTGATATTGTCGGAGTGAAAAAAGA TCACGTGATTGCCATGTTTCAACTGCTGCGAGAAGTTTGTAGCAACGACC TTCAAAGAAACCCAATTAGAATTGGTGGTGGTGGGGCCAATTTCGTTGTC CAAATAGATGAAAGCCAATTTCATCACAGACGAAGAGTGA

Coding sequence (CDS) from alignment at sc0000001:1763710..1764849-

>TCONS_00000225 ID=TCONS_00000225|Name=TCONS_00000225|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000001:1763710..1764849- (Clytia hemisphaerica)
GAGATGTAACCGACCATGTCGGAAAACTTTGACACTCAGACATGGAACGA
TTTTCGCGAATTGGCACAGAACCTCGATATCGGATCTTTTCTTTATGATC
TACTTATGGTCGAAGAAGATCAGTTGCGCCAAGGTTACTGATATTGTCGG
AGTGAAAAAAGATCACGTGATTGCCATGTTTCAACTGCTGCGAGAAGTTT
GTAGCAACGACCTTCAAAGAAACCCAATTAGAATTGGTGGTGGTGGGGCC
AATTTCGTTGTCCAAATAGATGAAAGCCAATTTCATCACAGACGAAGAGT
GATGAAAATGAAGAACGAATATAATAGATTTCAATTCATAAAGTCGAGGT
CAAACAGAAAACTCGCTCACAGTACTTTCACAATGGCAGTAGCAGCACGA
CAAGGGTTTATGAGAAGATGGGGAGGTTTACTTTTTGGCCCTGACAAAGC
AGCAATTGTGCATTTTTTACAGGGAAAAGGATTGGTTTCTGTGCAAAAGG
TGTGTCCGAACTGTCAGAATAACATGCACATGGAAGCACACGCAACATGC
CCTGATGGATACCGATGGAGATGTAACCGACCATGTCGGAAAACTTTGAC
ACTCAGACATGGAACGATTTTCGCGAATTGGCACAGAACCTCGATATCGG
ATCTTTTCTTTATGATCTACTTATGGTCGAAGAAGATCAGTTGCGCCAAG
GTTACTGATATTGTCGGAGTGAAAAAAGATCACGTGATTGCCATGTTTCA
ACTGCTGCGAGAAGTTTGTAGCAACGACCTTCAAAGAAACCCAATTAGAA
TTGGTGGTGGTGGGGCCAATTTCGTTGTCCAAATAGATGAAAGCCAATTT
CATCACAGACGAAGAGTGATGAAAATGAAGAACGAATATAATAGATTTCA
ATTCATAAAGTCGAGGTCAAACAGAAAACTCGCTCACAGTACTTTCACAA
TGGCAGTAGCAGCACGACAAGGGTTTATGAGAAGATGGGGAGGTTTACTT
TTTGGCCCTGACAAAGCAGCAATTGTGCATTTTTTACAGGGAAAAGGATT
GGTTTCTGTGCAAAAGGTGTGTCCGAACTGTCAGAATAACATGCACATGG
AAGCACACGCAACATGCCCTGATGGATACCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000125XLOC_000125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000225-proteinTCONS_00000225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000225-exon-sc0000001-1575043694:1764270..1764849TCONS_00000225-exon-sc0000001-1575043694:1764270..1764849Clytia hemisphaericaexon
TCONS_00000225-exon-sc0000001-1575043694:1763710..1764011TCONS_00000225-exon-sc0000001-1575043694:1763710..1764011Clytia hemisphaericaexon
TCONS_00000225-exon-sc0000001-1510915933:1764270..1764849TCONS_00000225-exon-sc0000001-1510915933:1764270..1764849Clytia hemisphaericaexon
TCONS_00000225-exon-sc0000001-1510915933:1763710..1764011TCONS_00000225-exon-sc0000001-1510915933:1763710..1764011Clytia hemisphaericaexon
TCONS_00000225-exon-sc0000001-1491911889:1764270..1764849TCONS_00000225-exon-sc0000001-1491911889:1764270..1764849Clytia hemisphaericaexon
TCONS_00000225-exon-sc0000001-1491911889:1763710..1764011TCONS_00000225-exon-sc0000001-1491911889:1763710..1764011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1763710..1764849 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0321235 0 0 0 0 0 0.0745821 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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