TCONS_00000222 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000222
Unique Name	TCONS_00000222
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1883

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000001:1667767..1671668-
coding sequence from alignment at sc0000001:1667767..1671668-

transcript sequence

>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=transcript|length=1883bp
tgaagccttatgttcttatagtttcTTCTTATCTGAAACAAAAAGTGTAc
cgacaaaacaaacaaagttAATATAACCATGGATGAATTGAGTGGGTACA
ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC
ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCAA
GGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCACCAGGCGAAG
AAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGTTCTTTCATTT
CCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTTTCAAGTGGACAT
TGATTCAATGATAGTGTTGAAGAATTTCGTGGCAATATCACCAGAAGAGA
GGGATGAGGTCACCATAACATCTCCTTTTGACCAAGCTGAACAACTCATC
ATTGATTATGACCATACACCACCTGGTTATGTAAGACTTCGATCAGATCG
AGGATATTTTGGAGTGGCATTTGATGAAGATTGTTCTGGCAAAGGAAGTA
TCATCAAAGGTGTAGAAAGAAAACCATTCACTTTCTTCGATACGATGGAA
ATGGTAAAATATCTTCTGCCATGTGAAAAGATTAACATCACCGAGAAATA
TCTACATGCGGTCCAGCAATATCTGTCTCCATGGAATTCAGTCATGGTGG
CAAGATGTCACCGATGATGGATGATGATTTAGTTCTATGTATTCAGTCTC
TTGACTGGCCACATGTTGCTGAAGGATGGAGAACCAGAGAAAGTAAATGG
CCTGGTGCGTCTGTGAAAGAAGAAATAAGTGAGATGGGTTGTCATTTAGT
GCCCGTGCATCACGCTGCCAGCAAATCACCAGAGATTGAATGGAGATTAT
CATTTTCTGAAGCAGAGAAAGAGTTAGCACTCAAAATGTCCGCCACTGTA
AAATCGGCTTATCTTTTGGTTAAGATTGTTATGAAATCGTTGAGTTTGAA
GGAGTATGGTATATCTTCGTACTTTCTGAAAACGACTTTGTTGTGGATGT
GCGAGAAAGATGCACATTTGCAAGATATCAGTTACGACCAGATTGGGATT
GTTTTTATGCAGATCTTTGATGCTTTGATCGAGAACCTTAACAACGGGAA
GATTGAACATTTTTTCGTTCCGGAGAACAACTTATTGAGTTGTACACCAA
GAAAGAATATCGATAAAGCTGTCGATCTCCTGCAGGTGGCGCGCAAAGAT
CCATTGAAGCTTCTAATGGAATTCACCCAATCATTCAAATTCTACGGTTT
TTATGAGCTTCCAAACTTCTCTATTTTCGATCCAATCGTTGAATTACTTC
GTAGCAATGATATGGGGAAAATGGTAGAAAGTAAAATATCAGTAACAAAG
GCTTTGGTAGAGTTCAATCTGACTTGGTTAGAGAAGACACGACCAATGAA
AGGATTTTACGTTATTGGAGAAATTGTATTCTTTACCATGTCATTCCTAG
CGAGAACACTTGTCAAGGAAGGCGAACCAGCGACTAAAGGATTGGAATAT
GTTAACCAGAGAATCAAATCTGTGAACGAAGAGAATTCAATGACATTCAA
AAGACATTTCATGGAAGACCTGATGTACTCGGATGACACATAAGGAaaat
acccctgtgtcacagacccagtaaCGTAAGCCAAGAGGGgtacaaaattt
gtgtaggatagcagatttttatgacactgtaattatctattcatgatatt
aatagaaaattacagtgtcataaaaatctgctctcctacacaaattttgc
gtccttcctgtctacgctactgcagacccactgggacctcAGTCTCACTG
Ggaaatttagccaaaattttgtccccggtggga

Run BLAST on NCBI

protein sequence of TCONS_00000222-protein

>TCONS_00000222-protein ID=TCONS_00000222-protein|Name=TCONS_00000222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MEFSHGGKMSPMMDDDLVLCIQSLDWPHVAEGWRTRESKWPGASVKEEIS
EMGCHLVPVHHAASKSPEIEWRLSFSEAEKELALKMSATVKSAYLLVKIV
MKSLSLKEYGISSYFLKTTLLWMCEKDAHLQDISYDQIGIVFMQIFDALI
ENLNNGKIEHFFVPENNLLSCTPRKNIDKAVDLLQVARKDPLKLLMEFTQ
SFKFYGFYELPNFSIFDPIVELLRSNDMGKMVESKISVTKALVEFNLTWL
EKTRPMKGFYVIGEIVFFTMSFLARTLVKEGEPATKGLEYVNQRIKSVNE
ENSMTFKRHFMEDLMYSDDT

Run BLAST on NCBI

transcript from alignment at sc0000001:1667767..1671668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=transcript|length=3902bp|location=Sequence derived from alignment at sc0000001:1667767..1671668- (Clytia hemisphaerica)
TGAAGCCTTATGTTCTTATAGTTTCTTCTTATCTGAAACAAAAAGTGTAC
CGACAAAACAAACAAAGTTAATATAACCATGGATGAATTGAGTGGGTACA
ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC
ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCGT
AAGTTATTTATCCATGAGCGTGAGTTGCCGAGGTCATAGGAAACCTAACT
CGATCTTGTTTCTTTACTTCGATTGATCATGCGGGCATTCCAACCCACTT
CGATAGTAAAACATTATACGGGTGACGCTCTACTGTTCGAAACGCTCCAT
TATTCGATGATATTGAAAGTCACCATCAATAAGAAACTCTCGTAATCAAG
GCTCTGCAATTCGCTCCCTTATCAAAATGAAAATCCAACCCCACTTGAAA
ATCGAACTAGAGGACTGCAAACTCTATAAACACTTTTACAAAAAAATTAA
CAGCATGCCAAAGAGCATCTGATTTAAAAATAACGTTATCGAGCAACATC
TAGGTGTTCCCAGCTGGCACATAACGTTTTTTCAGCGTTGGACGCTGTGA
ACGTTAGATAAACGTTGAAACAACGTTGTCTACCAGCTGGGTTATGATTC
GTTTACAGAAGGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCA
CCAGGCGAAGAAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGT
TCTTTCATTTCCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTGTA
AGAATGTCTCCAAATATCCCAACTGGCACAGAACGTCATAATAAGGTCTA
TCTGTAATCTGATGCCCTTCCATCTTCTTAACTGTAAAGAACAATTTAAG
AAAAATTTCTGTCTTTAAATTGTGGCAAAAATAGTTTCAATATATGGGTT
CAATCCCTGGCCGGGTCATAGCAAAGACTTCGTACGGAGCACAAAAATAG
TACTTGGTACCTCTCCGCTTGATGCTCAGCAATTACGGGAAATATCAAAA
CCTTATGAGTGTAAATATTTTCGCGGGTACTAAATTTTTGCGTGTACTTA
ATTTCCCGAGTTTTAGTACCCGCGAAAATATATACACTTAAAGTATCAAT
TGTAAGCGGATAATAATCAGGGAGTGGCGGATAGTAATCAGGGAGTGGCG
CCCCCTTGCCTTCGGGTAAGATAGCCACCGAATAAAGGGAGCCTTCGGGT
CGCTTCTGACTGCAGTCGCAGCTTACTTTACTTGCTTACTATATCTTTAC
CAAATGGATAGAGTCAAAATGAAGGGTCTTACGGTGATTGGATTCAATTA
AATCTGGTTATATTTGTCTTAGTTCAAGTGGACATTGATTCAATGATAGT
GTTGAAGAATTTCGTGGCAATATCACCAGAAGAGAGGGATGAGGTCACCA
TAACATCTCCTTTTGACCAAGCTGAACAACTCATCATTGATTATGACCAT
ACACCACCTGGTTATGTAAGGTAGGGCTAGAATTTGGCACGCTTGTCATA
AAGAAACTATTAGAAAAAGATTATAGAATTCCTGGCTAATGGAGATCAGG
TACATTTTTTCCACAGTCGAAAGTTATAGTTAGTGTGCCAGAAAAAGAAC
ATCTTTTAAACATTTCCTTATGAGTAGACGAAATGATGAAAAGGGGTTTG
AAAATCATTGCAAATATGAAAAGCGCAAAATACCCAGTCAAGGTAAAAGC
TACTTATCCTTAATAGACTTCGATCAGATCAAGGATATTTTGGAGTGGCA
TTTGATGAAGATTGTTCTGGCAAAGGAAGTATCATCAAAGGTGTAGAAAG
AAAACCATTCACTNTTGTATGAAAAGCGCAAAATACCCAGTCAAGGTAAA
AGCTACTTATCCTTTATAGACTTCGATCAGATCGAGGATATTTTGGAGTG
GCATTTGATGAAGATTGTTCTGGCAAAGGAAGTATCATCAAAGGTGTAGA
AAGAAAACCATTCACTTTCTTCGATACGATGTAAGCATGTCTTTTTAAAT
CTCACAAACTTTTTTTCCAACTATAGGTCCTATCTAAAAAGTTACGCATT
GAATTTTTATCATACATCTTTGACTAAAATTCGGTCTAAACTTCCAGTAT
CAGTCGGAATAAAAATCTAGCCTCTAGAATCAAGATTAAATCTAAATTTC
TAGCTTTATATTTCGATCAACTATCATTTCATTTATATTCAGGGAAATGG
TAAAATATCTTCTGCCATGTGAAAAGATTAACATCACCGAGAAATATCTA
CATGCGGTCCAGCAATATCTGTCTCCATGGAATTCAGTAAGGATTTAGTC
TCGAGTATTTGATAATTTTGTGGTCAAACAGTAGAAAATCGAAAAGTAGT
ATATGCTGGAATATCAGTAAGCCCATAGGTATCTTATATTTAAAAGGTAT
TGGTGCTGTTTTTCTAAGATTCAGTAAGAAAATTAGAGACCAAAAAAGTC
GTGACGTCTTCTAGTAAAGGCTATCAGGTACATACAATCAAGAAAAAAGA
CAAATCATTTTTGTTACAACTCTCTCAAGAGTTTCATGTTTCTACAACCA
TCAGTTGATAAAATGATGAATTTAAAAAGTTCATAAACTGATCTAATATA
GCGAATTTAAGTTATTGAAATGGTCAGGTACATTAACTTCTTATATCCCT
TTTCAATAGGTCATGGTGGCAAGATGTCACCGATGATGGATGATGATTTA
GTTCTATGTATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGATGGAG
AACCAGAGAAAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATAAGTG
AGATGGGTTGTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATCACCA
GAGATTGAATGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAGCACT
CAAAATGTCCGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATTGTTA
TGAAATCGTTGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCTGAAA
ACGACTTTGTTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATATCAG
TTACGACCAGATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTGATCG
AGAACCTTAACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAACAAC
TTATTGAGTTGTACACCAAGAAAGAATATCGATAAAGCTGTCGATCTCCT
GCAGGTGGCGCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACCCAAT
CATTCAAATTCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTTCGAT
CCAATCGTTGAATTACTTCGTAGCAATGATATGGGGAAAATGGTAGAAAG
TAAAATATCAGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGGTTAG
AGAAGACACGACCAATGAAAGGATTTTACGTTATTGGAGAAATTGTATTC
TTTACCATGTCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAACCAGC
GACTAAAGGATTGGAATATGTTAACCAGAGAATCAAATCTGTGAACGAAG
AGAATTCAATGACATTCAAAAGACATTTCATGGAAGACCTGATGTACTCG
GATGACACATAAGGAAAATACCCCTGTGTCACAGACCCAGTAACGTAAGC
CAAGAGGGGTACAAAATTTGTGTAGGATAGCAGATTTTTATGACACTGTA
ATTATCTATTCATGATATTAATAGAAAATTACAGTGTCATAAAAATCTGC
TCTCCTACACAAATTTTGCGTCCTTCCTGTCTACGCTACTGCAGACCCAC
TGGGACCTCAGTCTCACTGGGAAATTTAGCCAAAATTTTGTCCCCGGTGG
GA

Coding sequence (CDS) from alignment at sc0000001:1667767..1671668-

>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=CDS|length=1926bp|location=Sequence derived from alignment at sc0000001:1667767..1671668- (Clytia hemisphaerica)
GTCATGGTGGCAAGATGTCACCGATGATGGATGATGATTTAGTTCTATGT
ATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGATGGAGAACCAGAGA
AAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATAAGTGAGATGGGTT
GTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATCACCAGAGATTGAA
TGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAGCACTCAAAATGTC
CGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATTGTTATGAAATCGT
TGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCTGAAAACGACTTTG
TTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATATCAGTTACGACCA
GATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTGATCGAGAACCTTA
ACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAACAACTTATTGAGT
TGTACACCAAGAAAGAATATCGATAAAGCTGTCGATCTCCTGCAGGTGGC
GCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACCCAATCATTCAAAT
TCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTTCGATCCAATCGTT
GAATTACTTCGTAGCAATGATATGGGGAAAATGGTAGAAAGTAAAATATC
AGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGGTTAGAGAAGACAC
GACCAATGAAAGGATTTTACGTTATTGGAGAAATTGTATTCTTTACCATG
TCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAACCAGCGACTAAAGG
ATTGGAATATGTTAACCAGAGAATCAAATCTGTGAACGAAGAGAATTCAA
TGACATTCAAAAGACATTTCATGGAAGACCTGATGTACTCGGATGACACA
TAAATGGAATTCAGTCATGGTGGCAAGATGTCACCGATGATGGATGATGA
TTTAGTTCTATGTATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGAT
GGAGAACCAGAGAAAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATA
AGTGAGATGGGTTGTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATC
ACCAGAGATTGAATGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAG
CACTCAAAATGTCCGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATT
GTTATGAAATCGTTGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCT
GAAAACGACTTTGTTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATA
TCAGTTACGACCAGATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTG
ATCGAGAACCTTAACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAA
CAACTTATTGAGTTGTACACCAAGAAAGAATATCGATAAAGCTGTCGATC
TCCTGCAGGTGGCGCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACC
CAATCATTCAAATTCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTT
CGATCCAATCGTTGAATTACTTCGTAGCAATGATATGGGGAAAATGGTAG
AAAGTAAAATATCAGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGG
TTAGAGAAGACACGACCAATGAAAGGATTTTACGTTATTGGAGAAATTGT
ATTCTTTACCATGTCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAAC
CAGCGACTAAAGGATTGGAATATGTTAACCAGAGAATCAAATCTGTGAAC
GAAGAGAATTCAATGACATTCAAAAGACATTTCATGGAAGACCTGATGTA
CTCGGATGACACATAAATGGAATTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000123	XLOC_000123	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000222-protein	TCONS_00000222-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:1667767..1671668 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.113593	0.0724612	0	2.70542	1.55626	1.15919	1.50982	0.766916	1.06662	0.38238	0	4.72009	3.05541	0	0.257195	0.806055	1.61977	4.62715	4.75046	3.47432	2.56556	1.03263	0.951799	3.27841	4.38985	4.28848	5.95784	1.02908	0.496921

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR024810	Mab-21_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000222 vs. Swiss-Prot (Human)

BLAST of TCONS_00000222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000222 (transcript) - C. hemisphaerica