Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000222
Unique NameTCONS_00000222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=transcript|length=1883bp
tgaagccttatgttcttatagtttcTTCTTATCTGAAACAAAAAGTGTAc
cgacaaaacaaacaaagttAATATAACCATGGATGAATTGAGTGGGTACA
ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC
ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCAA
GGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCACCAGGCGAAG
AAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGTTCTTTCATTT
CCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTTTCAAGTGGACAT
TGATTCAATGATAGTGTTGAAGAATTTCGTGGCAATATCACCAGAAGAGA
GGGATGAGGTCACCATAACATCTCCTTTTGACCAAGCTGAACAACTCATC
ATTGATTATGACCATACACCACCTGGTTATGTAAGACTTCGATCAGATCG
AGGATATTTTGGAGTGGCATTTGATGAAGATTGTTCTGGCAAAGGAAGTA
TCATCAAAGGTGTAGAAAGAAAACCATTCACTTTCTTCGATACGATGGAA
ATGGTAAAATATCTTCTGCCATGTGAAAAGATTAACATCACCGAGAAATA
TCTACATGCGGTCCAGCAATATCTGTCTCCATGGAATTCAGTCATGGTGG
CAAGATGTCACCGATGATGGATGATGATTTAGTTCTATGTATTCAGTCTC
TTGACTGGCCACATGTTGCTGAAGGATGGAGAACCAGAGAAAGTAAATGG
CCTGGTGCGTCTGTGAAAGAAGAAATAAGTGAGATGGGTTGTCATTTAGT
GCCCGTGCATCACGCTGCCAGCAAATCACCAGAGATTGAATGGAGATTAT
CATTTTCTGAAGCAGAGAAAGAGTTAGCACTCAAAATGTCCGCCACTGTA
AAATCGGCTTATCTTTTGGTTAAGATTGTTATGAAATCGTTGAGTTTGAA
GGAGTATGGTATATCTTCGTACTTTCTGAAAACGACTTTGTTGTGGATGT
GCGAGAAAGATGCACATTTGCAAGATATCAGTTACGACCAGATTGGGATT
GTTTTTATGCAGATCTTTGATGCTTTGATCGAGAACCTTAACAACGGGAA
GATTGAACATTTTTTCGTTCCGGAGAACAACTTATTGAGTTGTACACCAA
GAAAGAATATCGATAAAGCTGTCGATCTCCTGCAGGTGGCGCGCAAAGAT
CCATTGAAGCTTCTAATGGAATTCACCCAATCATTCAAATTCTACGGTTT
TTATGAGCTTCCAAACTTCTCTATTTTCGATCCAATCGTTGAATTACTTC
GTAGCAATGATATGGGGAAAATGGTAGAAAGTAAAATATCAGTAACAAAG
GCTTTGGTAGAGTTCAATCTGACTTGGTTAGAGAAGACACGACCAATGAA
AGGATTTTACGTTATTGGAGAAATTGTATTCTTTACCATGTCATTCCTAG
CGAGAACACTTGTCAAGGAAGGCGAACCAGCGACTAAAGGATTGGAATAT
GTTAACCAGAGAATCAAATCTGTGAACGAAGAGAATTCAATGACATTCAA
AAGACATTTCATGGAAGACCTGATGTACTCGGATGACACATAAGGAaaat
acccctgtgtcacagacccagtaaCGTAAGCCAAGAGGGgtacaaaattt
gtgtaggatagcagatttttatgacactgtaattatctattcatgatatt
aatagaaaattacagtgtcataaaaatctgctctcctacacaaattttgc
gtccttcctgtctacgctactgcagacccactgggacctcAGTCTCACTG
Ggaaatttagccaaaattttgtccccggtggga
Run BLAST on NCBI

protein sequence of TCONS_00000222-protein

>TCONS_00000222-protein ID=TCONS_00000222-protein|Name=TCONS_00000222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MEFSHGGKMSPMMDDDLVLCIQSLDWPHVAEGWRTRESKWPGASVKEEIS
EMGCHLVPVHHAASKSPEIEWRLSFSEAEKELALKMSATVKSAYLLVKIV
MKSLSLKEYGISSYFLKTTLLWMCEKDAHLQDISYDQIGIVFMQIFDALI
ENLNNGKIEHFFVPENNLLSCTPRKNIDKAVDLLQVARKDPLKLLMEFTQ
SFKFYGFYELPNFSIFDPIVELLRSNDMGKMVESKISVTKALVEFNLTWL
EKTRPMKGFYVIGEIVFFTMSFLARTLVKEGEPATKGLEYVNQRIKSVNE
ENSMTFKRHFMEDLMYSDDT
Run BLAST on NCBI

transcript from alignment at sc0000001:1667767..1671668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=transcript|length=3902bp|location=Sequence derived from alignment at sc0000001:1667767..1671668- (Clytia hemisphaerica)
TGAAGCCTTATGTTCTTATAGTTTCTTCTTATCTGAAACAAAAAGTGTAC CGACAAAACAAACAAAGTTAATATAACCATGGATGAATTGAGTGGGTACA ATCTAGATGCGTTCACATTTCTACTACGGAATATTCTACCAGAGTCGATC ATCTGGAGAAGCAACCGTCTAAATGTTGGCCCACGGAAGAAAAGAGTCGT AAGTTATTTATCCATGAGCGTGAGTTGCCGAGGTCATAGGAAACCTAACT CGATCTTGTTTCTTTACTTCGATTGATCATGCGGGCATTCCAACCCACTT CGATAGTAAAACATTATACGGGTGACGCTCTACTGTTCGAAACGCTCCAT TATTCGATGATATTGAAAGTCACCATCAATAAGAAACTCTCGTAATCAAG GCTCTGCAATTCGCTCCCTTATCAAAATGAAAATCCAACCCCACTTGAAA ATCGAACTAGAGGACTGCAAACTCTATAAACACTTTTACAAAAAAATTAA CAGCATGCCAAAGAGCATCTGATTTAAAAATAACGTTATCGAGCAACATC TAGGTGTTCCCAGCTGGCACATAACGTTTTTTCAGCGTTGGACGCTGTGA ACGTTAGATAAACGTTGAAACAACGTTGTCTACCAGCTGGGTTATGATTC GTTTACAGAAGGAGAAAGCAGACAAATTGATGGGCTCAACGGATAATCCA CCAGGCGAAGAAATCCACGAAATCATAAACACTGGGAGTCAAGCAGAGGT TCTTTCATTTCCAATGATTCAAAGCAAAGAAAACTCACCATGCAACTGTA AGAATGTCTCCAAATATCCCAACTGGCACAGAACGTCATAATAAGGTCTA TCTGTAATCTGATGCCCTTCCATCTTCTTAACTGTAAAGAACAATTTAAG AAAAATTTCTGTCTTTAAATTGTGGCAAAAATAGTTTCAATATATGGGTT CAATCCCTGGCCGGGTCATAGCAAAGACTTCGTACGGAGCACAAAAATAG TACTTGGTACCTCTCCGCTTGATGCTCAGCAATTACGGGAAATATCAAAA CCTTATGAGTGTAAATATTTTCGCGGGTACTAAATTTTTGCGTGTACTTA ATTTCCCGAGTTTTAGTACCCGCGAAAATATATACACTTAAAGTATCAAT TGTAAGCGGATAATAATCAGGGAGTGGCGGATAGTAATCAGGGAGTGGCG CCCCCTTGCCTTCGGGTAAGATAGCCACCGAATAAAGGGAGCCTTCGGGT CGCTTCTGACTGCAGTCGCAGCTTACTTTACTTGCTTACTATATCTTTAC CAAATGGATAGAGTCAAAATGAAGGGTCTTACGGTGATTGGATTCAATTA AATCTGGTTATATTTGTCTTAGTTCAAGTGGACATTGATTCAATGATAGT GTTGAAGAATTTCGTGGCAATATCACCAGAAGAGAGGGATGAGGTCACCA TAACATCTCCTTTTGACCAAGCTGAACAACTCATCATTGATTATGACCAT ACACCACCTGGTTATGTAAGGTAGGGCTAGAATTTGGCACGCTTGTCATA AAGAAACTATTAGAAAAAGATTATAGAATTCCTGGCTAATGGAGATCAGG TACATTTTTTCCACAGTCGAAAGTTATAGTTAGTGTGCCAGAAAAAGAAC ATCTTTTAAACATTTCCTTATGAGTAGACGAAATGATGAAAAGGGGTTTG AAAATCATTGCAAATATGAAAAGCGCAAAATACCCAGTCAAGGTAAAAGC TACTTATCCTTAATAGACTTCGATCAGATCAAGGATATTTTGGAGTGGCA TTTGATGAAGATTGTTCTGGCAAAGGAAGTATCATCAAAGGTGTAGAAAG AAAACCATTCACTNTTGTATGAAAAGCGCAAAATACCCAGTCAAGGTAAA AGCTACTTATCCTTTATAGACTTCGATCAGATCGAGGATATTTTGGAGTG GCATTTGATGAAGATTGTTCTGGCAAAGGAAGTATCATCAAAGGTGTAGA AAGAAAACCATTCACTTTCTTCGATACGATGTAAGCATGTCTTTTTAAAT CTCACAAACTTTTTTTCCAACTATAGGTCCTATCTAAAAAGTTACGCATT GAATTTTTATCATACATCTTTGACTAAAATTCGGTCTAAACTTCCAGTAT CAGTCGGAATAAAAATCTAGCCTCTAGAATCAAGATTAAATCTAAATTTC TAGCTTTATATTTCGATCAACTATCATTTCATTTATATTCAGGGAAATGG TAAAATATCTTCTGCCATGTGAAAAGATTAACATCACCGAGAAATATCTA CATGCGGTCCAGCAATATCTGTCTCCATGGAATTCAGTAAGGATTTAGTC TCGAGTATTTGATAATTTTGTGGTCAAACAGTAGAAAATCGAAAAGTAGT ATATGCTGGAATATCAGTAAGCCCATAGGTATCTTATATTTAAAAGGTAT TGGTGCTGTTTTTCTAAGATTCAGTAAGAAAATTAGAGACCAAAAAAGTC GTGACGTCTTCTAGTAAAGGCTATCAGGTACATACAATCAAGAAAAAAGA CAAATCATTTTTGTTACAACTCTCTCAAGAGTTTCATGTTTCTACAACCA TCAGTTGATAAAATGATGAATTTAAAAAGTTCATAAACTGATCTAATATA GCGAATTTAAGTTATTGAAATGGTCAGGTACATTAACTTCTTATATCCCT TTTCAATAGGTCATGGTGGCAAGATGTCACCGATGATGGATGATGATTTA GTTCTATGTATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGATGGAG AACCAGAGAAAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATAAGTG AGATGGGTTGTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATCACCA GAGATTGAATGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAGCACT CAAAATGTCCGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATTGTTA TGAAATCGTTGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCTGAAA ACGACTTTGTTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATATCAG TTACGACCAGATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTGATCG AGAACCTTAACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAACAAC TTATTGAGTTGTACACCAAGAAAGAATATCGATAAAGCTGTCGATCTCCT GCAGGTGGCGCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACCCAAT CATTCAAATTCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTTCGAT CCAATCGTTGAATTACTTCGTAGCAATGATATGGGGAAAATGGTAGAAAG TAAAATATCAGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGGTTAG AGAAGACACGACCAATGAAAGGATTTTACGTTATTGGAGAAATTGTATTC TTTACCATGTCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAACCAGC GACTAAAGGATTGGAATATGTTAACCAGAGAATCAAATCTGTGAACGAAG AGAATTCAATGACATTCAAAAGACATTTCATGGAAGACCTGATGTACTCG GATGACACATAAGGAAAATACCCCTGTGTCACAGACCCAGTAACGTAAGC CAAGAGGGGTACAAAATTTGTGTAGGATAGCAGATTTTTATGACACTGTA ATTATCTATTCATGATATTAATAGAAAATTACAGTGTCATAAAAATCTGC TCTCCTACACAAATTTTGCGTCCTTCCTGTCTACGCTACTGCAGACCCAC TGGGACCTCAGTCTCACTGGGAAATTTAGCCAAAATTTTGTCCCCGGTGG GA

Coding sequence (CDS) from alignment at sc0000001:1667767..1671668-

>TCONS_00000222 ID=TCONS_00000222|Name=TCONS_00000222|organism=Clytia hemisphaerica|type=CDS|length=1926bp|location=Sequence derived from alignment at sc0000001:1667767..1671668- (Clytia hemisphaerica)
GTCATGGTGGCAAGATGTCACCGATGATGGATGATGATTTAGTTCTATGT
ATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGATGGAGAACCAGAGA
AAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATAAGTGAGATGGGTT
GTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATCACCAGAGATTGAA
TGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAGCACTCAAAATGTC
CGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATTGTTATGAAATCGT
TGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCTGAAAACGACTTTG
TTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATATCAGTTACGACCA
GATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTGATCGAGAACCTTA
ACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAACAACTTATTGAGT
TGTACACCAAGAAAGAATATCGATAAAGCTGTCGATCTCCTGCAGGTGGC
GCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACCCAATCATTCAAAT
TCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTTCGATCCAATCGTT
GAATTACTTCGTAGCAATGATATGGGGAAAATGGTAGAAAGTAAAATATC
AGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGGTTAGAGAAGACAC
GACCAATGAAAGGATTTTACGTTATTGGAGAAATTGTATTCTTTACCATG
TCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAACCAGCGACTAAAGG
ATTGGAATATGTTAACCAGAGAATCAAATCTGTGAACGAAGAGAATTCAA
TGACATTCAAAAGACATTTCATGGAAGACCTGATGTACTCGGATGACACA
TAAATGGAATTCAGTCATGGTGGCAAGATGTCACCGATGATGGATGATGA
TTTAGTTCTATGTATTCAGTCTCTTGACTGGCCACATGTTGCTGAAGGAT
GGAGAACCAGAGAAAGTAAATGGCCTGGTGCGTCTGTGAAAGAAGAAATA
AGTGAGATGGGTTGTCATTTAGTGCCCGTGCATCACGCTGCCAGCAAATC
ACCAGAGATTGAATGGAGATTATCATTTTCTGAAGCAGAGAAAGAGTTAG
CACTCAAAATGTCCGCCACTGTAAAATCGGCTTATCTTTTGGTTAAGATT
GTTATGAAATCGTTGAGTTTGAAGGAGTATGGTATATCTTCGTACTTTCT
GAAAACGACTTTGTTGTGGATGTGCGAGAAAGATGCACATTTGCAAGATA
TCAGTTACGACCAGATTGGGATTGTTTTTATGCAGATCTTTGATGCTTTG
ATCGAGAACCTTAACAACGGGAAGATTGAACATTTTTTCGTTCCGGAGAA
CAACTTATTGAGTTGTACACCAAGAAAGAATATCGATAAAGCTGTCGATC
TCCTGCAGGTGGCGCGCAAAGATCCATTGAAGCTTCTAATGGAATTCACC
CAATCATTCAAATTCTACGGTTTTTATGAGCTTCCAAACTTCTCTATTTT
CGATCCAATCGTTGAATTACTTCGTAGCAATGATATGGGGAAAATGGTAG
AAAGTAAAATATCAGTAACAAAGGCTTTGGTAGAGTTCAATCTGACTTGG
TTAGAGAAGACACGACCAATGAAAGGATTTTACGTTATTGGAGAAATTGT
ATTCTTTACCATGTCATTCCTAGCGAGAACACTTGTCAAGGAAGGCGAAC
CAGCGACTAAAGGATTGGAATATGTTAACCAGAGAATCAAATCTGTGAAC
GAAGAGAATTCAATGACATTCAAAAGACATTTCATGGAAGACCTGATGTA
CTCGGATGACACATAAATGGAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000123XLOC_000123Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000222-proteinTCONS_00000222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000222-exon-sc0000001-1575043694:1671471..1671668TCONS_00000222-exon-sc0000001-1575043694:1671471..1671668Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1575043694:1670872..1671010TCONS_00000222-exon-sc0000001-1575043694:1670872..1671010Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1575043694:1670149..1670296TCONS_00000222-exon-sc0000001-1575043694:1670149..1670296Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1575043694:1669639..1669749TCONS_00000222-exon-sc0000001-1575043694:1669639..1669749Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1575043694:1669333..1669426TCONS_00000222-exon-sc0000001-1575043694:1669333..1669426Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1575043694:1667767..1668959TCONS_00000222-exon-sc0000001-1575043694:1667767..1668959Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1671471..1671668TCONS_00000222-exon-sc0000001-1510915933:1671471..1671668Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1670872..1671010TCONS_00000222-exon-sc0000001-1510915933:1670872..1671010Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1670149..1670296TCONS_00000222-exon-sc0000001-1510915933:1670149..1670296Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1669639..1669749TCONS_00000222-exon-sc0000001-1510915933:1669639..1669749Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1669333..1669426TCONS_00000222-exon-sc0000001-1510915933:1669333..1669426Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1510915933:1667767..1668959TCONS_00000222-exon-sc0000001-1510915933:1667767..1668959Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1671471..1671668TCONS_00000222-exon-sc0000001-1491911889:1671471..1671668Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1670872..1671010TCONS_00000222-exon-sc0000001-1491911889:1670872..1671010Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1670149..1670296TCONS_00000222-exon-sc0000001-1491911889:1670149..1670296Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1669639..1669749TCONS_00000222-exon-sc0000001-1491911889:1669639..1669749Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1669333..1669426TCONS_00000222-exon-sc0000001-1491911889:1669333..1669426Clytia hemisphaericaexon
TCONS_00000222-exon-sc0000001-1491911889:1667767..1668959TCONS_00000222-exon-sc0000001-1491911889:1667767..1668959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1667767..1671668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.113593 0.0724612 0 2.70542 1.55626 1.15919 1.50982 0.766916 1.06662 0.38238 0 4.72009 3.05541 0 0.257195 0.806055 1.61977 4.62715 4.75046 3.47432 2.56556 1.03263 0.951799 3.27841 4.38985 4.28848 5.95784 1.02908 0.496921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top