|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000220 ID=TCONS_00000220|Name=TCONS_00000220|organism=Clytia hemisphaerica|type=transcript|length=701bp
CTCATAAATGATTTACGTAAACATTGAAAAAAGCCGAACCAGCTGACATC
AACGCAGTCGTTCGAGAAGGAAGGAAAGAGCAAGTTGGGAGGAAGAcaaa
ttttcgacattttttgagtgatattattcaaaaagaatatctttccaagt
AACATAAAGAAGTCACAAAGATGTCGACAAAAAGATCGAGAAATCTTCGC
ATCGCAGTCGTTTGCAGTAGTAACATGAATAGAAGTATGGAGGCCCACAG
CTTTTTGAGTAAACGAGGATTCAATGTCAAGTCGTATGGCACTGGAAACC
AAGTCAAGCTACCAGGACCATCAGCTGACAGGCCAAATGTTTATCCGTTC
ACAACCCCATATGACCACATTTACAGGGAACTCTACAGGAAAGACGCTCA
TTTGTATCCTCCTCCATTGATCAGTTCAAGTCCTTTTCCATGATTGAATT
TTGTTCATTTCATGAACAATTTTGAATGGTATGGAGGTTAAAATCAGGTT
TGCATACACTATGTGCTTAGCCAGGTTAAGTCAGTCAGTTAGTAAGGTCA
GGAaaagaatttaaagttttaaaattcaagAAGTAATGCTGTGATTCTCA
AGGAATGCCTGACAGGTAAATTCGGAGAGATGGTGTTTTGGACTCGTCTA
ATGAATAAAtactaattcatgatatgcaccactggagggtcttctgagaa
c Run BLAST on NCBI transcript from alignment at sc0000001:1625833..1630696- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000220 ID=TCONS_00000220|Name=TCONS_00000220|organism=Clytia hemisphaerica|type=transcript|length=4864bp|location=Sequence derived from alignment at sc0000001:1625833..1630696- (Clytia hemisphaerica)
CTCATAAATGATTTACGTAAACATTGAAAAAAGCCGAACCAGCTGACATC
AACGCAGTCGTTCGAGAAGGAAGGAAAGAGCAAGTTGGGAGGAAGACAAA
TTTTCGACATTTTTTGAGTGATATTATTCAAAAAGAATATCTTTCCAAGT
AACATAAAGAAGTCACAAAGATGTCGACAAAAAGATCGAGAAATCTTCGC
ATCGCAGTCGTTTGCAGTAGTAACATGAATAGAAGTATGGAGGCCCACAG
CTTTTTGAGGTATATTATTTTCTTTTTACACCACCAACCACCCGTTTTTA
TTTCCATTATTTTCATCTTATTGCTCCAAGAATACATATATTTGACTTTA
AGAGTGTTCTTAATCCAAAGGGTATGTACATATATATCTTCCTGTATATA
GTGGATCTACTTCACTAATATGGATTGTTATTATTTTATGGAATATTCAC
CTCTTTAACTTGATGTTTGACCAGATGTTTGATTAAAATCACACATTTCG
GTGTTTCTGTCATCTTTATGAATTTATACGTCGTCAACTGCTCTTACTTG
GGACTATCTGACAAGACATGGGTCTATCTGACAAGACATGGGTCAACCAT
TCAGCCACCATTTTACCGAACCTCCAAAGTCATTTAATACACCTTCATCG
GAAATTCCACAAAAACAATCGTGCTATAAAATGGGTCTGTTGAAATTGGG
AGGTAAACATAAATGGTAGCGCGAGTAAACAAAACAAAGCTTTCAAGATG
CTAGCAGAAGCTATAAGAAAGAAAAAAACAACAACTTCGGTGGTTCTTCA
GTTGATTTGGAGGCTCTTTTGGCATCAATATTTTGGGTATTTTGTAAGGC
TTTTTGCCTGAAAACCGCAATATCGCGCTTTGTTTACCTCCCAAAAAGTG
TTGCGTAGCAACAACGCGAGGAGGTGGAATTTCCGATGAGGTGTATTAAC
ATAACCGCAAATCATAGGTAGCAAATAATGTGAATACGCTACTCACCAGG
TAGGCTTTCACACCGCAAAAGGAACAAATCTTTTTGATGAGAAACATGTA
AATGCGATCGCGCACATTTGCGCAAGCGTCCAATTTGAAGCAAACTAGTG
CTCTATCTTAGCTGGGTAAGGCCTGAGTCACATATAACTTGTGTTTGTGT
CATTTCCAGCCCCAAAATGTGAGTCGGTCGGCATATAAAATCATCGGAAA
AATACACTCTGAACATAGGTTGTCAGTTAGTGCTGGATTCATCGGAAAAA
TGCGCTCTGAGTATATAGGTTTGTTCAGGCGGCAAGTTATCATCAGGCGC
ACGAGCTGTAATATGATTATTTTACATATCGCGACCGCACAAAAAGCAGT
TGCATAGCGCTTTTTAAGGCAAAAAATCTTTGAAACATTGCAGACAGAAG
TCTTAAAAACATTCAATGATCAAAACGCCGGCTACGCTGAATCTACAAAA
TTCTTTGAATAACATCGCTGAAAAATCCGACAGATCTTCCGACTTTCCGA
CTCTAAAAGGGTTTGATTTTTAACATAGAAAGTGAGTCGGTCGGGCGACG
CGAACACAACTTATTTGTGATCTTGGCCTAAACCAAAGTTTGGTACTGAC
AATTTGGTCAATCAAGATATTTTTTTTGCCTTGTTTTTCTCACCATGTCC
AGTTGTTTTCTGATTGAAAAAATTGGCTCTGAACTGCTCGTCTCGTCGTC
AACAGTATATTAAGGCAACAATTGCCTTGTCTTATCCAGAAATATTCCAA
TAATTATGTAAAAAAGGAGAAATTCCCCAAAATTGCTGGAGTTTCTAAAT
CAGGAAGCATTTTTACTTTTGGTACGAAAGTTGGCTTTGAGCACTCCAAA
CACTTTGGCCATGGAATATAATAATAATATAGTTTTACAAATTCGCAGGC
CACTGATATAAATGACTCAATATTATACCTTATAAATAATTAACATTCAC
TGGGTAGTTAGGAAATTCACTTTAAGCAGCACTTCTTAATATTTTTCCTA
TTTTGACTAGTAAGTTACTACTTAACTACTAAGTAACTATATATTGGATG
GAGATAAAAATACCATTCTATGCTAGAAATTTTCACAGTGCTCAGTATTT
CCCAAGACAGTGAGTAAGGGCAAAATAGATTTAACAAAACTGAAATCAGA
TGAGCTCAGAGTGAATTTGATATTTGGGTATGATCGCTGAATGCTGTTCT
TTATCCTATAAATAGCCCAAAACTCCAATTAACAATCAAAAGCATCAATT
TTGGATAGATTGCTGTGGTATAGCCACTTTTTATCGAATCAATTTTGATG
CGTGCAATTACGACTATTATAAGAAAACTCATGCTTTTGATAAATCTGCC
AACCTACTCATAGGTCTTTAATATATGTAGTTGATATTCTTTACAAGAAA
TCTCTATCCCTCAGTTTTTATAGAATGAAAATATACCATCAACTGCTCTG
ATTTGGGACGATTGGTCGAAACACGGGACTGTTGATATCTGGCCTGTATT
TTCAATTACTGTTANCATATTAAGGCAACAATTGCCTTGTCTTATCCAGA
AATATTCCAATAATTATGTAAAAAAGGAGAAATTCCCCAAAATTGCTAGA
GTTTCCAAATCAGGAAGCACTTTTGGTACGAAAGTTGGCTTTGAGCACTC
CAAACACTTTGGCCATGGAATATAATAATAATATAGTTTTACAAATTCGC
AGGCCACTGATATAAATGACTCAATATTATACCTTATAAATAATTAACAT
TCACTGGGTAGTTAGGAAATTCACTTTAAGCAGCACTTCTTAATATTTTT
CCTATTTTGACTAGTAAGTTACTACTTAACTACTAAGTAACTATATATTG
GATGGAGATAAAAATACCATTCTATGCTAGAAATTTTCACAGTGCTCAGT
ATTTCCCAAGACAGTGAGTAAGGGCAAAATAGATTTAACAAAACTGAAAT
CAGATGAGCTCAGAGTGAATTTGATATTTGGGTATGATCGCTGAATGCTG
TTCTTTATCCTATAATAGCCCAAAACTCCAATTAACAATCAAAAGCGTCA
ATTTTGGATAGATTGCTGTGGTATAGCCACTTTTTATCGAATCAATTTTG
ATGCGTGCAATTACGACTATTATAAGAAAACTCATGCTTTTGATAAATCT
GCCAACCTACTCATAGGTCTTTTATATATGCAGTTGATATTCTTTACAAG
AAATCTCTATCCCTCAGTTTTTATTGAATGAAAATATACCATCAACTGCT
CTGATTTGGGACGATTGGTCGAAACACGGGACTGTTGATATCTGGCCTGT
ATTTTCAATTACTGTTAAATGTCTTTGACAACAAATTTGTAACTCCACCA
AGTTTATCAATCATACTTTCTGTCATAACATGTCACAATAACTTTCACTG
ATAGTGCGACCTTTTAACTTTTTTGTTTTCATTCAAAATGACCGAACGTC
GATTGGAGAATTAGAGAATGCCTGCTGCCTATCGCCCGATGGGATTAACA
AATAATGAGTTTGTAAATTGCCGCGCGAGTGACGTTAAACACCCCATCGT
TTTGCCACTAATTTGGTCTTCTTCTTTCCAGACATTGTGTGTGATTTTTT
TCATATTTCGATTTAAAAGCCTACTCGGTGGGAAAGAGAAATCATGTATT
TTTTAATACGCCATTCATTAACTCAAATCAAATGACTTTGGAGGTTCGGT
GAAATGGTGGCCGAATTGCCGTCCCATGTTCTGTTAGATAGTCCCAAGTT
GGAGCAGTTGACAGTAATTAATGCGCAGCATTTTACGAAGAAGAATTGAT
ACGCCACATTTCCAATTCTGCTATCTTTACTTCTGCCCTCTTTTTTCTGC
CTTTTTAAGTATCACGCTAGATCTACATCACACCATTATGTCAAAAAAAA
TTTAGAATCTCGTTATACCAATAGCAGCCAATAGAATAGCCCAATTTATG
CAAGCCACCAAGTCTTAAGGACCAATTTTAAAATTATTCCTTGTTGTAAC
CACCTCGTAATTCACTAAGTCCTAACCAATTTTTGTGTTGCAACCTCGTT
CTTCTTGCTGAATAAAATTCTGAAAATAAAGCTAAATTTTATGTTGTTTT
ATATAGTGTTTTAAAATTAATATAATTCAGAAAACATACAAAAACCCTTT
GGATTAATACATAGAAAAAAATTCTTAAAGTTAGAAAAAATCAGNATAGC
CCAAAACTCCAATTAACAATCAAAAGCGTCAATTTTGGATAGATTGCTGT
GGTATAGCCACTTTTTATCGAATCAATTTTGATGCGTGCAATTACGACTA
TTATAAGAAAACTCATGCTTNTTGAATATTAAGCATGAATAAAAAATCAG
CTTGGTTAGTATGGGTTAGTTTAATCTTAGACTTGCAAAATTAACAATCT
GTTTTTACTTTATTTTTTGTAGTAAACGAGGATTCAATGTCAAGTCGTAT
GGCACTGGAAACCAAGTCAAGCTACCAGGACCATCAGCTGACAGGCCAAA
TGTTTATCCGTTCACAACCCCATATGACCACATTTACAGGGAACTCTACA
GGAAAGACGCTCATTTGTATCCTCCTCCATTGATCAGTTCAAGTCCTTTT
CCATGATTGAATTTTGTTCATTTCATGAACAATTTTGAATGGTATGGAGG
TTAAAATCAGGTTTGCATACACTATGTGCTTAGCCAGGTTAAGTCAGTCA
GTTAGTAAGGTCAGGAAAAGAATTTAAAGTTTTAAAATTCAAGAAGTAAT
GCTGTGATTCTCAAGGAATGCCTGACAGGTAAATTCGGAGAGATGGTGTT
TTGGACTCGTCTAATGAATAAATACTAATTCATGATATGCACCACTGGAG
GGTCTTCTGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000220-exon-sc0000001-1575043694:1630438..1630696 | TCONS_00000220-exon-sc0000001-1575043694:1630438..1630696 | Clytia hemisphaerica | exon |
| TCONS_00000220-exon-sc0000001-1575043694:1625833..1626274 | TCONS_00000220-exon-sc0000001-1575043694:1625833..1626274 | Clytia hemisphaerica | exon |
| TCONS_00000220-exon-sc0000001-1510915933:1630438..1630696 | TCONS_00000220-exon-sc0000001-1510915933:1630438..1630696 | Clytia hemisphaerica | exon |
| TCONS_00000220-exon-sc0000001-1510915933:1625833..1626274 | TCONS_00000220-exon-sc0000001-1510915933:1625833..1626274 | Clytia hemisphaerica | exon |
| TCONS_00000220-exon-sc0000001-1491911889:1630438..1630696 | TCONS_00000220-exon-sc0000001-1491911889:1630438..1630696 | Clytia hemisphaerica | exon |
| TCONS_00000220-exon-sc0000001-1491911889:1625833..1626274 | TCONS_00000220-exon-sc0000001-1491911889:1625833..1626274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1625833..1630696 - |
Blast
BLAST of TCONS_00000220 vs. Swiss-Prot (Human)
Match: SSU72 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.149e-27 Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 3
Query: 195 LRIAVVCSSNMNRSMEAHSFLSKRGFNVKSYGTGNQVKLPGPSADRPNVYPFTTPYDHIYRELYRKD 395
LR+AVVCSSN NRSMEAH+ LSKRGF+V+S+GTG VKLPGP+ D+PNVY F T YD +Y +L RKD
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKD 72
The following BLAST results are available for this feature:
|
