TCONS_00000220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000220
Unique NameTCONS_00000220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000220 ID=TCONS_00000220|Name=TCONS_00000220|organism=Clytia hemisphaerica|type=transcript|length=701bp
CTCATAAATGATTTACGTAAACATTGAAAAAAGCCGAACCAGCTGACATC
AACGCAGTCGTTCGAGAAGGAAGGAAAGAGCAAGTTGGGAGGAAGAcaaa
ttttcgacattttttgagtgatattattcaaaaagaatatctttccaagt
AACATAAAGAAGTCACAAAGATGTCGACAAAAAGATCGAGAAATCTTCGC
ATCGCAGTCGTTTGCAGTAGTAACATGAATAGAAGTATGGAGGCCCACAG
CTTTTTGAGTAAACGAGGATTCAATGTCAAGTCGTATGGCACTGGAAACC
AAGTCAAGCTACCAGGACCATCAGCTGACAGGCCAAATGTTTATCCGTTC
ACAACCCCATATGACCACATTTACAGGGAACTCTACAGGAAAGACGCTCA
TTTGTATCCTCCTCCATTGATCAGTTCAAGTCCTTTTCCATGATTGAATT
TTGTTCATTTCATGAACAATTTTGAATGGTATGGAGGTTAAAATCAGGTT
TGCATACACTATGTGCTTAGCCAGGTTAAGTCAGTCAGTTAGTAAGGTCA
GGAaaagaatttaaagttttaaaattcaagAAGTAATGCTGTGATTCTCA
AGGAATGCCTGACAGGTAAATTCGGAGAGATGGTGTTTTGGACTCGTCTA
ATGAATAAAtactaattcatgatatgcaccactggagggtcttctgagaa
c
Run BLAST on NCBI

transcript from alignment at sc0000001:1625833..1630696-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000220 ID=TCONS_00000220|Name=TCONS_00000220|organism=Clytia hemisphaerica|type=transcript|length=4864bp|location=Sequence derived from alignment at sc0000001:1625833..1630696- (Clytia hemisphaerica)
CTCATAAATGATTTACGTAAACATTGAAAAAAGCCGAACCAGCTGACATC AACGCAGTCGTTCGAGAAGGAAGGAAAGAGCAAGTTGGGAGGAAGACAAA TTTTCGACATTTTTTGAGTGATATTATTCAAAAAGAATATCTTTCCAAGT AACATAAAGAAGTCACAAAGATGTCGACAAAAAGATCGAGAAATCTTCGC ATCGCAGTCGTTTGCAGTAGTAACATGAATAGAAGTATGGAGGCCCACAG CTTTTTGAGGTATATTATTTTCTTTTTACACCACCAACCACCCGTTTTTA TTTCCATTATTTTCATCTTATTGCTCCAAGAATACATATATTTGACTTTA AGAGTGTTCTTAATCCAAAGGGTATGTACATATATATCTTCCTGTATATA GTGGATCTACTTCACTAATATGGATTGTTATTATTTTATGGAATATTCAC CTCTTTAACTTGATGTTTGACCAGATGTTTGATTAAAATCACACATTTCG GTGTTTCTGTCATCTTTATGAATTTATACGTCGTCAACTGCTCTTACTTG GGACTATCTGACAAGACATGGGTCTATCTGACAAGACATGGGTCAACCAT TCAGCCACCATTTTACCGAACCTCCAAAGTCATTTAATACACCTTCATCG GAAATTCCACAAAAACAATCGTGCTATAAAATGGGTCTGTTGAAATTGGG AGGTAAACATAAATGGTAGCGCGAGTAAACAAAACAAAGCTTTCAAGATG CTAGCAGAAGCTATAAGAAAGAAAAAAACAACAACTTCGGTGGTTCTTCA GTTGATTTGGAGGCTCTTTTGGCATCAATATTTTGGGTATTTTGTAAGGC TTTTTGCCTGAAAACCGCAATATCGCGCTTTGTTTACCTCCCAAAAAGTG TTGCGTAGCAACAACGCGAGGAGGTGGAATTTCCGATGAGGTGTATTAAC ATAACCGCAAATCATAGGTAGCAAATAATGTGAATACGCTACTCACCAGG TAGGCTTTCACACCGCAAAAGGAACAAATCTTTTTGATGAGAAACATGTA AATGCGATCGCGCACATTTGCGCAAGCGTCCAATTTGAAGCAAACTAGTG CTCTATCTTAGCTGGGTAAGGCCTGAGTCACATATAACTTGTGTTTGTGT CATTTCCAGCCCCAAAATGTGAGTCGGTCGGCATATAAAATCATCGGAAA AATACACTCTGAACATAGGTTGTCAGTTAGTGCTGGATTCATCGGAAAAA TGCGCTCTGAGTATATAGGTTTGTTCAGGCGGCAAGTTATCATCAGGCGC ACGAGCTGTAATATGATTATTTTACATATCGCGACCGCACAAAAAGCAGT TGCATAGCGCTTTTTAAGGCAAAAAATCTTTGAAACATTGCAGACAGAAG TCTTAAAAACATTCAATGATCAAAACGCCGGCTACGCTGAATCTACAAAA TTCTTTGAATAACATCGCTGAAAAATCCGACAGATCTTCCGACTTTCCGA CTCTAAAAGGGTTTGATTTTTAACATAGAAAGTGAGTCGGTCGGGCGACG CGAACACAACTTATTTGTGATCTTGGCCTAAACCAAAGTTTGGTACTGAC AATTTGGTCAATCAAGATATTTTTTTTGCCTTGTTTTTCTCACCATGTCC AGTTGTTTTCTGATTGAAAAAATTGGCTCTGAACTGCTCGTCTCGTCGTC AACAGTATATTAAGGCAACAATTGCCTTGTCTTATCCAGAAATATTCCAA TAATTATGTAAAAAAGGAGAAATTCCCCAAAATTGCTGGAGTTTCTAAAT CAGGAAGCATTTTTACTTTTGGTACGAAAGTTGGCTTTGAGCACTCCAAA CACTTTGGCCATGGAATATAATAATAATATAGTTTTACAAATTCGCAGGC CACTGATATAAATGACTCAATATTATACCTTATAAATAATTAACATTCAC TGGGTAGTTAGGAAATTCACTTTAAGCAGCACTTCTTAATATTTTTCCTA TTTTGACTAGTAAGTTACTACTTAACTACTAAGTAACTATATATTGGATG GAGATAAAAATACCATTCTATGCTAGAAATTTTCACAGTGCTCAGTATTT CCCAAGACAGTGAGTAAGGGCAAAATAGATTTAACAAAACTGAAATCAGA TGAGCTCAGAGTGAATTTGATATTTGGGTATGATCGCTGAATGCTGTTCT TTATCCTATAAATAGCCCAAAACTCCAATTAACAATCAAAAGCATCAATT TTGGATAGATTGCTGTGGTATAGCCACTTTTTATCGAATCAATTTTGATG CGTGCAATTACGACTATTATAAGAAAACTCATGCTTTTGATAAATCTGCC AACCTACTCATAGGTCTTTAATATATGTAGTTGATATTCTTTACAAGAAA TCTCTATCCCTCAGTTTTTATAGAATGAAAATATACCATCAACTGCTCTG ATTTGGGACGATTGGTCGAAACACGGGACTGTTGATATCTGGCCTGTATT TTCAATTACTGTTANCATATTAAGGCAACAATTGCCTTGTCTTATCCAGA AATATTCCAATAATTATGTAAAAAAGGAGAAATTCCCCAAAATTGCTAGA GTTTCCAAATCAGGAAGCACTTTTGGTACGAAAGTTGGCTTTGAGCACTC CAAACACTTTGGCCATGGAATATAATAATAATATAGTTTTACAAATTCGC AGGCCACTGATATAAATGACTCAATATTATACCTTATAAATAATTAACAT TCACTGGGTAGTTAGGAAATTCACTTTAAGCAGCACTTCTTAATATTTTT CCTATTTTGACTAGTAAGTTACTACTTAACTACTAAGTAACTATATATTG GATGGAGATAAAAATACCATTCTATGCTAGAAATTTTCACAGTGCTCAGT ATTTCCCAAGACAGTGAGTAAGGGCAAAATAGATTTAACAAAACTGAAAT CAGATGAGCTCAGAGTGAATTTGATATTTGGGTATGATCGCTGAATGCTG TTCTTTATCCTATAATAGCCCAAAACTCCAATTAACAATCAAAAGCGTCA ATTTTGGATAGATTGCTGTGGTATAGCCACTTTTTATCGAATCAATTTTG ATGCGTGCAATTACGACTATTATAAGAAAACTCATGCTTTTGATAAATCT GCCAACCTACTCATAGGTCTTTTATATATGCAGTTGATATTCTTTACAAG AAATCTCTATCCCTCAGTTTTTATTGAATGAAAATATACCATCAACTGCT CTGATTTGGGACGATTGGTCGAAACACGGGACTGTTGATATCTGGCCTGT ATTTTCAATTACTGTTAAATGTCTTTGACAACAAATTTGTAACTCCACCA AGTTTATCAATCATACTTTCTGTCATAACATGTCACAATAACTTTCACTG ATAGTGCGACCTTTTAACTTTTTTGTTTTCATTCAAAATGACCGAACGTC GATTGGAGAATTAGAGAATGCCTGCTGCCTATCGCCCGATGGGATTAACA AATAATGAGTTTGTAAATTGCCGCGCGAGTGACGTTAAACACCCCATCGT TTTGCCACTAATTTGGTCTTCTTCTTTCCAGACATTGTGTGTGATTTTTT TCATATTTCGATTTAAAAGCCTACTCGGTGGGAAAGAGAAATCATGTATT TTTTAATACGCCATTCATTAACTCAAATCAAATGACTTTGGAGGTTCGGT GAAATGGTGGCCGAATTGCCGTCCCATGTTCTGTTAGATAGTCCCAAGTT GGAGCAGTTGACAGTAATTAATGCGCAGCATTTTACGAAGAAGAATTGAT ACGCCACATTTCCAATTCTGCTATCTTTACTTCTGCCCTCTTTTTTCTGC CTTTTTAAGTATCACGCTAGATCTACATCACACCATTATGTCAAAAAAAA TTTAGAATCTCGTTATACCAATAGCAGCCAATAGAATAGCCCAATTTATG CAAGCCACCAAGTCTTAAGGACCAATTTTAAAATTATTCCTTGTTGTAAC CACCTCGTAATTCACTAAGTCCTAACCAATTTTTGTGTTGCAACCTCGTT CTTCTTGCTGAATAAAATTCTGAAAATAAAGCTAAATTTTATGTTGTTTT ATATAGTGTTTTAAAATTAATATAATTCAGAAAACATACAAAAACCCTTT GGATTAATACATAGAAAAAAATTCTTAAAGTTAGAAAAAATCAGNATAGC CCAAAACTCCAATTAACAATCAAAAGCGTCAATTTTGGATAGATTGCTGT GGTATAGCCACTTTTTATCGAATCAATTTTGATGCGTGCAATTACGACTA TTATAAGAAAACTCATGCTTNTTGAATATTAAGCATGAATAAAAAATCAG CTTGGTTAGTATGGGTTAGTTTAATCTTAGACTTGCAAAATTAACAATCT GTTTTTACTTTATTTTTTGTAGTAAACGAGGATTCAATGTCAAGTCGTAT GGCACTGGAAACCAAGTCAAGCTACCAGGACCATCAGCTGACAGGCCAAA TGTTTATCCGTTCACAACCCCATATGACCACATTTACAGGGAACTCTACA GGAAAGACGCTCATTTGTATCCTCCTCCATTGATCAGTTCAAGTCCTTTT CCATGATTGAATTTTGTTCATTTCATGAACAATTTTGAATGGTATGGAGG TTAAAATCAGGTTTGCATACACTATGTGCTTAGCCAGGTTAAGTCAGTCA GTTAGTAAGGTCAGGAAAAGAATTTAAAGTTTTAAAATTCAAGAAGTAAT GCTGTGATTCTCAAGGAATGCCTGACAGGTAAATTCGGAGAGATGGTGTT TTGGACTCGTCTAATGAATAAATACTAATTCATGATATGCACCACTGGAG GGTCTTCTGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000122XLOC_000122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000220-exon-sc0000001-1575043694:1630438..1630696TCONS_00000220-exon-sc0000001-1575043694:1630438..1630696Clytia hemisphaericaexon
TCONS_00000220-exon-sc0000001-1575043694:1625833..1626274TCONS_00000220-exon-sc0000001-1575043694:1625833..1626274Clytia hemisphaericaexon
TCONS_00000220-exon-sc0000001-1510915933:1630438..1630696TCONS_00000220-exon-sc0000001-1510915933:1630438..1630696Clytia hemisphaericaexon
TCONS_00000220-exon-sc0000001-1510915933:1625833..1626274TCONS_00000220-exon-sc0000001-1510915933:1625833..1626274Clytia hemisphaericaexon
TCONS_00000220-exon-sc0000001-1491911889:1630438..1630696TCONS_00000220-exon-sc0000001-1491911889:1630438..1630696Clytia hemisphaericaexon
TCONS_00000220-exon-sc0000001-1491911889:1625833..1626274TCONS_00000220-exon-sc0000001-1491911889:1625833..1626274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1625833..1630696 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.62577 13.1752 6.09936 8.37267 14.9248 9.71345 14.1417 15.3072 9.03054 14.0254 14.9008 15.3336 20.0257 16.9244 10.5155 16.1529 13.9016 18.1942 17.3691 20.2318 15.3219 15.903 22.7248 21.59 14.8359 19.6337 37.546 39.9268 32.0684 38.0242
Blast
BLAST of TCONS_00000220 vs. Swiss-Prot (Human)
Match: SSU72 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.149e-27
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 3
Query:  195 LRIAVVCSSNMNRSMEAHSFLSKRGFNVKSYGTGNQVKLPGPSADRPNVYPFTTPYDHIYRELYRKD 395
            LR+AVVCSSN NRSMEAH+ LSKRGF+V+S+GTG  VKLPGP+ D+PNVY F T YD +Y +L RKD
Sbjct:    6 LRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKD 72          
The following BLAST results are available for this feature:
BLAST of TCONS_00000220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSU721.149e-2770.15RNA polymerase II subunit A C-terminal domain phos... [more]
back to top