TCONS_00000216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000216
Unique NameTCONS_00000216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000216 ID=TCONS_00000216|Name=TCONS_00000216|organism=Clytia hemisphaerica|type=transcript|length=581bp
AATAACTTCTAACTGTCAACAACAACTCTTCGCAAAAATAGTTGAATAGA
ATTGAAAAGTATGAAAATGGAAAAGAAGgaggtttttcttttaaaagctt
TCGGTCGAAGTATGACCATACGCAAAGCCGATGCGGGTGTGTTTCGGCAG
AGAAACAACAACAGCCTAAAAGTATCACTGGAGAAAAAGTACGTGTTTGG
CTAGGTCATGGACGTTAGAAACAGTTAAAAGGTGAGGAAATCCTCAATTG
TTTTTGGTAATGCCACGTTCACCTAACATCAAAGACAAAGACTCACAGCT
TCAAATTGTGAGCAAATATCAGCAAATGAACCGCTAAAAGGTGAAAGAAA
GCGTGCCATCATCGCCGTCCGTTCGTTGAGTTCATCTAATTAAATGAAAT
CGGAGTCTCTTATTGATAAAGTAACCTAGACTGTCAACCAAATCAAGTCA
TTATTGTCTCGTCTGTGATCTTGACTATACGCAACGAACTGGACTATTGA
AACTTCTTCAAGTGATACAATATCAAACCAGAAGACCTTGGTCGAATACC
TGTTCTTACCTTTTGATTTGGACAATCTCAT
Run BLAST on NCBI

transcript from alignment at sc0000001:1553429..1554218-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000216 ID=TCONS_00000216|Name=TCONS_00000216|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at sc0000001:1553429..1554218- (Clytia hemisphaerica)
AATAACTTCTAACTGTCAACAACAACTCTTCGCAAAAATAGTTGAATAGA ATTGAAAAGTATGAAAATGGAAAAGAAGGAGGTTTTTCTTTTAAAAGCTT TCGGTCGAAGTATGACCATACGCAAAGCCGATGCGGGTGTGTTTCGGCAG AGAAACAACAACAGCCTAAAAGTATCACTGGAGAAAAAGTACGTGTTTGG CTAGGTCATGGACGTTAGAAACAGTTAAAAGGTGAGGAAATCCTCAATTG TTTTTGGTAATGCCACGTTCACCTAACATCAAAGACAAAGACTCACAGCT TCAAATTGTGAGCAAATATCAGCAAATGAACCGCTAAAAGTAAGTGCAAA ATATGCTTTTCCCTCTTCAATACTCGAACATAGTTTTCATGTTTCCTCAG GTTTCCTTTTTATTCGCGCATTTTTTACGACTTTATTTGGACAATTTTGT ATTAAAATTTATTTAAACAAAGAGCCCTACATCATTTTAAGCTAGTCATC TGAATCTTTCTTGCTAATATTGGTACTCTTTTGATTCTCCACTGACAGGG TGAAAGAAAGCGTGCCATCATCGCCGTCCGTTCGTTGAGTTCATCTAATT AAATGAAATCGGAGTCTCTTATTGATAAAGTAACCTAGACTGTCAACCAA ATCAAGTCATTATTGTCTCGTCTGTGATCTTGACTATACGCAACGAACTG GACTATTGAAACTTCTTCAAGTGATACAATATCAAACCAGAAGACCTTGG TCGAATACCTGTTCTTACCTTTTGATTTGGACAATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000119XLOC_000119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000216-exon-sc0000001-1575043694:1553880..1554218TCONS_00000216-exon-sc0000001-1575043694:1553880..1554218Clytia hemisphaericaexon
TCONS_00000216-exon-sc0000001-1575043694:1553429..1553670TCONS_00000216-exon-sc0000001-1575043694:1553429..1553670Clytia hemisphaericaexon
TCONS_00000216-exon-sc0000001-1510915933:1553880..1554218TCONS_00000216-exon-sc0000001-1510915933:1553880..1554218Clytia hemisphaericaexon
TCONS_00000216-exon-sc0000001-1510915933:1553429..1553670TCONS_00000216-exon-sc0000001-1510915933:1553429..1553670Clytia hemisphaericaexon
TCONS_00000216-exon-sc0000001-1491911889:1553880..1554218TCONS_00000216-exon-sc0000001-1491911889:1553880..1554218Clytia hemisphaericaexon
TCONS_00000216-exon-sc0000001-1491911889:1553429..1553670TCONS_00000216-exon-sc0000001-1491911889:1553429..1553670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1553429..1554218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0953703 0.279003 0.431932 0.739512 0 0 0 0 0 0.199094 0 0.0635161 0.0634278 0.0658704 0.108309 0.348696 0 0.0733817 0 0.212175 0.276628 0.269859 0.10935 0.0994147 55.1908 23.8515 0.130772 0 0.105854 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top