TCONS_00000213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000213
Unique NameTCONS_00000213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000213 ID=TCONS_00000213|Name=TCONS_00000213|organism=Clytia hemisphaerica|type=transcript|length=2358bp
tagaaaaacaaaaaccaaataGATACAGTATACAGCAGTATACAGAATAT
AAACAAAACTTTACCATGGATAATACCAAATGAGTTGATTCAGATTATTT
TATCTGTTTTATCTCATCTCTCAATCAAAGATGCAAAATGCTTTCACAGA
CATCAAAACGAATGCATTCATTGACTATGCCTAAAGATTTGGAAGCGCCC
AAGATTAAAAAAGACCATTCCTTTGAATATCTTAAAAAGTATTTCATCGC
GATTACTTACATATCGAAGAAGTCCATACTTGTGATAACACGCTTTTCGA
ATGCAAACGAGCTGGAGTTTTAGAagctttttcacaatttaaaaGGTTAT
ATTTGGACCATAAAGATACTATATCACCGGAAGACCTCTTGGCAATATCG
TTTCAAGGAGATCTTGTTGTTCATACAAAAGCTCTCGCTGTTAGGCATTC
GAATAACTTTATTGAACTGTTGGATTTCATCAATGGTAATAATGTAAAGG
AAGTCATTTTAGATCATAAAAATCAGTGGTTGATTAAAGATGTTGTGCAT
CGTGATCAACGCCTTTGGTCACTTGTCGAGTTAGCTGTTCTCGCTCAAAG
TGGTGTGATATCTGCGAGGTATCAGCTTATTCCTTCGATATTGATTCGTT
TAGTAATGCTCATTTTTTCGATTATTTTGCAAGGATGAAAGGTTTAAAAC
TGACAATGGATTCAAAAGTGTGGATGAGCGTAATGAagataccgtattac
ttcgaataaacgccccttcttttaaacgccccctcgaataaacgcccctc
ctaaaaggaaaattattaaataaacgccccctcaaataaactcCCCCTTC
GAATGAACGCCCCCTCTAgggaaggggcgtttattagaaacttgtgactt
taatacttcaataccagtgttgattgggtttgaaacggaagattttagtc
atttcttgtaaccatagcagttttcgatgcaattttaatTGTTGAACCAA
AGTAATTTTGCACTAATATCCcgataaagaactaaaacaaagggtatatt
tgctctaaatattcgactttagactaaaatgatttaataaacgccccctt
cttttaaacgtcCCTCCTAgaatcgaaaaaattaaattaacgccccgggc
gtttattcgaagtaatacggtagaTATTTTTTTTACCGTAAAAGACATTG
AATTATTGATTGAGAAGGATATCAAACTCACCAAATTATCagatctacaa
tcagtgccataacatattggcacttttggctaaatttaccatttttcgaa
aattgaagttcgagcgagaatgtcaatttcgggccttcaacttgatttca
acgattATTTCATGGGATTTCATTATAATCTGGGatggatttattggttt
ctactGGACcacttttgaacttttggatcctcagatcctaaggtcctcct
aagtcttaagtctagcgttaaaactcagagttaaaactctacccttcgaa
cctactttagagcacttgcaaatcgattgtggtttcaaaacatttccttt
ttgtgccaagtatttcgtcACCGATTGTAGCTTTTGGAGACTGAAGAGCC
TGGACCAATTAGTACATACCttctttgaaaaagttgaaatgtttgGAAGA
GCTTCAAATAGTAGATATACATCTGAAGAAGctaatcaaatttcagaaaa
actaTACCTATTCCCACATCATATGACAACAATCAAATGACCAATGAATT
TTAACAACCCAAAATCCTAAGAGACaacaaataaaacaaaccaaattTCA
CTAGAGACACATTACTAgaacaattaaaaacaaatttagcgAATGGGATT
CCaatctttaaaatgaaaagagaTCTAAACccaaagaaaatggaaaaagt
aTGGAAAGATGAAGACCGAAGTCTGAGATCAGGTGCGGTACCTAGAGTAA
GCATTGATATAATCACAGGCACTGATATAACCAAGGAGTTGGTAGAAACT
CTTCCTGTGAAACTTCACTCACTTTATCCTTTGTATTTTGACATTAAAAC
TGTCAAAGAAATTGCTGAAGTAGTTTCAAAGAGCACACATTTGGACTACC
TGGAAATCATtatagactttttttttaagaaactagttttaccgagcagc
ctcaatgtttcttaagaaatcggccttttgagccttaaatatatttctta
catgtttctaaactttttgacgtaatcagcctatttttcatgcaaagaaa
aaaacaacatttgttttgattggaaggttcttaaaaaaccgaattaaaag
atgttattttctcattctcagcctcagcatgtttcttagatgtttcttag
tttttagg
Run BLAST on NCBI

protein sequence of TCONS_00000213-protein

>TCONS_00000213-protein ID=TCONS_00000213-protein|Name=TCONS_00000213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKRDLNPKKMEKVWKDEDRSLRSGAVPRVSIDIITGTDITKELVETLPVK
LHSLYPLYFDIKTVKEIAEVVSKSTHLDYLEIIIDFFFKKLVLPSSLNVS
Run BLAST on NCBI

transcript from alignment at sc0000001:1497940..1500297-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000213 ID=TCONS_00000213|Name=TCONS_00000213|organism=Clytia hemisphaerica|type=transcript|length=2358bp|location=Sequence derived from alignment at sc0000001:1497940..1500297- (Clytia hemisphaerica)
TAGAAAAACAAAAACCAAATAGATACAGTATACAGCAGTATACAGAATAT
AAACAAAACTTTACCATGGATAATACCAAATGAGTTGATTCAGATTATTT
TATCTGTTTTATCTCATCTCTCAATCAAAGATGCAAAATGCTTTCACAGA
CATCAAAACGAATGCATTCATTGACTATGCCTAAAGATTTGGAAGCGCCC
AAGATTAAAAAAGACCATTCCTTTGAATATCTTAAAAAGTATTTCATCGC
GATTACTTACATATCGAAGAAGTCCATACTTGTGATAACACGCTTTTCGA
ATGCAAACGAGCTGGAGTTTTAGAAGCTTTTTCACAATTTAAAAGGTTAT
ATTTGGACCATAAAGATACTATATCACCGGAAGACCTCTTGGCAATATCG
TTTCAAGGAGATCTTGTTGTTCATACAAAAGCTCTCGCTGTTAGGCATTC
GAATAACTTTATTGAACTGTTGGATTTCATCAATGGTAATAATGTAAAGG
AAGTCATTTTAGATCATAAAAATCAGTGGTTGATTAAAGATGTTGTGCAT
CGTGATCAACGCCTTTGGTCACTTGTCGAGTTAGCTGTTCTCGCTCAAAG
TGGTGTGATATCTGCGAGGTATCAGCTTATTCCTTCGATATTGATTCGTT
TAGTAATGCTCATTTTTTCGATTATTTTGCAAGGATGAAAGGTTTAAAAC
TGACAATGGATTCAAAAGTGTGGATGAGCGTAATGAAGATACCGTATTAC
TTCGAATAAACGCCCCTTCTTTTAAACGCCCCCTCGAATAAACGCCCCTC
CTAAAAGGAAAATTATTAAATAAACGCCCCCTCAAATAAACTCCCCCTTC
GAATGAACGCCCCCTCTAGGGAAGGGGCGTTTATTAGAAACTTGTGACTT
TAATACTTCAATACCAGTGTTGATTGGGTTTGAAACGGAAGATTTTAGTC
ATTTCTTGTAACCATAGCAGTTTTCGATGCAATTTTAATTGTTGAACCAA
AGTAATTTTGCACTAATATCCCGATAAAGAACTAAAACAAAGGGTATATT
TGCTCTAAATATTCGACTTTAGACTAAAATGATTTAATAAACGCCCCCTT
CTTTTAAACGTCCCTCCTAGAATCGAAAAAATTAAATTAACGCCCCGGGC
GTTTATTCGAAGTAATACGGTAGATATTTTTTTTACCGTAAAAGACATTG
AATTATTGATTGAGAAGGATATCAAACTCACCAAATTATCAGATCTACAA
TCAGTGCCATAACATATTGGCACTTTTGGCTAAATTTACCATTTTTCGAA
AATTGAAGTTCGAGCGAGAATGTCAATTTCGGGCCTTCAACTTGATTTCA
ACGATTATTTCATGGGATTTCATTATAATCTGGGATGGATTTATTGGTTT
CTACTGGACCACTTTTGAACTTTTGGATCCTCAGATCCTAAGGTCCTCCT
AAGTCTTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTACCCTTCGAA
CCTACTTTAGAGCACTTGCAAATCGATTGTGGTTTCAAAACATTTCCTTT
TTGTGCCAAGTATTTCGTCACCGATTGTAGCTTTTGGAGACTGAAGAGCC
TGGACCAATTAGTACATACCTTCTTTGAAAAAGTTGAAATGTTTGGAAGA
GCTTCAAATAGTAGATATACATCTGAAGAAGCTAATCAAATTTCAGAAAA
ACTATACCTATTCCCACATCATATGACAACAATCAAATGACCAATGAATT
TTAACAACCCAAAATCCTAAGAGACAACAAATAAAACAAACCAAATTTCA
CTAGAGACACATTACTAGAACAATTAAAAACAAATTTAGCGAATGGGATT
CCAATCTTTAAAATGAAAAGAGATCTAAACCCAAAGAAAATGGAAAAAGT
ATGGAAAGATGAAGACCGAAGTCTGAGATCAGGTGCGGTACCTAGAGTAA
GCATTGATATAATCACAGGCACTGATATAACCAAGGAGTTGGTAGAAACT
CTTCCTGTGAAACTTCACTCACTTTATCCTTTGTATTTTGACATTAAAAC
TGTCAAAGAAATTGCTGAAGTAGTTTCAAAGAGCACACATTTGGACTACC
TGGAAATCATTATAGACTTTTTTTTTAAGAAACTAGTTTTACCGAGCAGC
CTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATATATTTCTTA
CATGTTTCTAAACTTTTTGACGTAATCAGCCTATTTTTCATGCAAAGAAA
AAAACAACATTTGTTTTGATTGGAAGGTTCTTAAAAAACCGAATTAAAAG
ATGTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCTTAG
TTTTTAGG

Coding sequence (CDS) from alignment at sc0000001:1497940..1500297-

>TCONS_00000213 ID=TCONS_00000213|Name=TCONS_00000213|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000001:1497940..1500297- (Clytia hemisphaerica)
ATGAAAAGAGATCTAAACCCAAAGAAAATGGAAAAAGTATGGAAAGATGA
AGACCGAAGTCTGAGATCAGGTGCGGTACCTAGAGTAAGCATTGATATAA
TCACAGGCACTGATATAACCAAGGAGTTGGTAGAAACTCTTCCTGTGAAA
CTTCACTCACTTTATCCTTTGTATTTTGACATTAAAACTGTCAAAGAAAT
TGCTGAAGTAGTTTCAAAGAGCACACATTTGGACTACCTGGAAATCATTA
TAGACTTTTTTTTTAAGAAACTAGTTTTACCGAGCAGCCTCAATGTTTCT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000116XLOC_000116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000213-proteinTCONS_00000213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000213-exon-sc0000001-1575043694:1497940..1500297TCONS_00000213-exon-sc0000001-1575043694:1497940..1500297Clytia hemisphaericaexon
TCONS_00000213-exon-sc0000001-1510915933:1497940..1500297TCONS_00000213-exon-sc0000001-1510915933:1497940..1500297Clytia hemisphaericaexon
TCONS_00000213-exon-sc0000001-1491911889:1497940..1500297TCONS_00000213-exon-sc0000001-1491911889:1497940..1500297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1497940..1500297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.82897	0.890336	1.55729	1.74951	2.76671	2.29054	2.43699	3.216	1.41927	1.25494	1.76837	1.06941	1.07093	0.93737	1.62988	1.84208	1.15463	1.15864	0.67387	1.20366	2.00349	1.36208	0.734901	1.26274	1.52557	2.16062	1.30965	1.2776	1.51267	1.26653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top