TCONS_00000211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000211
Unique NameTCONS_00000211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=transcript|length=2988bp
aggcgctgtggtatagtggtcattgaccttggttgctgcacaggtgactg
aggtttgattcccactcgcagctgttcacttggcaagtgaataaaccttc
gcccgggtcaacccatgccatgtgaggagaATTGAGTAGCCAgtcgaaaa
taggcctcaaagccttctgcaactcaaccaaataaaaaatagaaaaatga
taTTGAGATAGTTTACACTTTCctattgaagaagaagaagcaaTGAAAAT
GTATGAAGTTCGAAACAAAAGAGCATGGTAGAAGAACTGGTGTTGTGTAT
TTTTGACGATTGTAGTTTTAATGCTTGTTGACAAGTGCCAGGAAGAAGAA
GGGTGAAAGAATCAGTGGATATTTCGCAAGCATACGAAAAACGTCAAGAT
ATAAATCCACCAAAGTGATCAACATGAAATACTATCAAGTTCTCACAATA
TGTGCCGTGTTGGTTTGTTTATTGTCGATATCAGAATCGCGAAGCATCGC
CAAGCGTACGAACAACTATATCACTTACGAGACTTGCATCAAACATGCAG
ATGACAATAACGAAACGTGTTACGCTGATATTCCTTGGTTTTCGAACGAA
TTTACCAATGATGATAAACTTGCCATGAATGACGCATGCGTGAAAAAACA
CCAAGACGAACATCATTTATGTCTGATGGAACGCCAAGAAGCTCAAAAAC
ATGAACATGCATcatcatcatgaatattttccaacttttatGTATTAGTA
TAATGTCTTTTACACAGTAGACAAAAAAATATGAACACACATCATGAACT
TATTTTAACACTTTTCTATTGGTGATGTCTTTTTCGCattaggggccgtc
cacatagtacttacgcactaagggggaaggggggtcttctcaaaagcggg
gaggggaggggtcaaaagaaaatatacgtacgcagaaaaaaaaatttcat
agcccttttttgcttgttttccTGTCGACTTTtaatacgcatcaaggaaa
agaaataaattcttaataaacattgagtttcatgtatgaaataaagctcc
aaaccaaacgatttgaattcgaaattttcttcaaccaaggaggggggggg
gtttaaatgaaaaagtacgtacttaccagggggtactcaattttcgacat
tttagtgcgtacgtactatgtggacagcCTAGATAAAATTTGTATTTTCC
TTTCCGGGAAACAGAAATATTGTCAGGTTTAATAGCAAACCTGGAAGGGT
TATTGTATGTTTGAGTGATGTTAGGATGTGGTCGTGTATTCAATAGGCTT
CGAATTGAGCAATTATCAGTACACCCctctgtctcagtgccccggtagaa
ctttttccctcagtggggatgaaaatttctatcaaaataccaatggggat
agaaaatctattgtttccagctcgaaaattccagtggggatggttttgga
gtgcaattttttacattcagttttcaatggggataaaatcatagtgcaat
ttcgcagtggggttgaaattgtaggatattttttccaccggggacgattt
tttgtcctatttttccactggggtggggggtccaccgggtctgtgacaca
ggggtgtatcagTTCTCGTTTTGGACAACTTATTGTTTCCCAACTAAAAG
CCCTAGTGTTTCGTAAGTTAGTTAATGTATGGTTTTTTTGTACCGTAGTG
GTGTAGACAATCACTTTGCCTGCCATTTTAAACCAGTCGATTTTGCGGAC
TAACATTGCAAAtagtttcaaattgtttcagcTTTTCTTCTCTCTTCAAA
AGCTTTTAACAAACTCGCTATTTTTCTACATGTGCGAAATAttctatttt
aaagatttttcggTGAAGATATGTTTTAGCTAGATTAATGCATCAGAAAc
ccattacatgtttttttttataagcatataagaatccaaaaacaggctca
gagatacTTAGGTCGAAAGATTAATAAGGCTGAAAGAATGCTTGAGGGAT
CTTATATCCGAAGCAAAAATTTAAGGAAATACTGAAAgccgtaaaattcc
agccaaaaaaagccaaaatcaggaaaaaacatttttcgtaggctcaagta
atgcttgccatatgcttaatttttccccatatctgagcctagatatgctt
ataagtacaatgcttataaaaaaacatgtagcaaCTTTTTAGACAGAACT
AGAACTAAATTACATAAATTCTTCTGGTATAAGGTGATATAATTTACGAA
AAAAATTATCTTAGTTAAGTTATTAAAACATAACATTAATATAATACGGA
TAGCTtacaaatataaaaatattacaCTTAAAATCATCTGTTCTGCCTTG
GCTATATATTTCTTGCGTgttcttcaatattttcattttttcgaatAATT
TTGCTCAAACTTTGTCTATCAACGCTGAAGTTTTTTCCCGTAATTTGCCA
ATCaatcaatttattttaaatCCTCATGCATTCTCGCATAGGGCACCAAA
TCAAACAATAAGGCTTTTCTTATCTTTTGTTTTGGATTTTGGAATAATCA
GTGCCTATAATTTATTATAATTCCATGCAACTAATACACATTTAGGGTTG
TCCCTTTCGGCGCGAAATCCACCGGAAACTGTTAAGTATCCCTCTTCCAA
TAAACCAATAAACGATCCTGTTTCATATCACGTGGTAACGATCCTTGTCT
TCTGATTGGCTATCACCATTAAACTTCCAATAAACCAATCAAACGATCCT
CTTTCATATCACGTGGTAATGATCCTTGTCTTCTGATTGGCTATCACCAT
TAACCAATCCATTATCTTTGTTTGAAATAGACAATAGATTTTCGTTCGAT
TTGTATTTCTTGATAATTGCTTTCGCTTTGTCAAAATCTGTATCAAGATT
TTTGAGAGCGGCGGACCTTTTCGATTGACGTTCTTTGGCTTCTGCTAAAC
GACGTTCTAAATATGGACTTGACGTTCGCAATGTCTAG
Run BLAST on NCBI

protein sequence of TCONS_00000211-protein

>TCONS_00000211-protein ID=TCONS_00000211-protein|Name=TCONS_00000211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MKYYQVLTICAVLVCLLSISESRSIAKRTNNYITYETCIKHADDNNETCY
ADIPWFSNEFTNDDKLAMNDACVKKHQDEHHLCLMERQEAQKHEHASSS
Run BLAST on NCBI

transcript from alignment at sc0000001:1451572..1456783-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=transcript|length=5212bp|location=Sequence derived from alignment at sc0000001:1451572..1456783- (Clytia hemisphaerica)
AGGCGCTGTGGTATAGTGGTCATTGACCTTGGTTGCTGCACAGGTGACTG AGGTTTGATTCCCACTCGCAGCTGTTCACTTGGCAAGTGAATAAACCTTC GCCCGGGTCAACCCATGCCATGTGAGGAGAATTGAGTAGCCAGTCGAAAA TAGGCCTCAAAGCCTTCTGCAACTCAACCAAATAAAAAATAGAAAAATGA TATTGAGATAGTTTACACTTTCCTATTGAAGAAGAAGAAGCAATGAAAAT GTATGAAGTTCGAAACAAAAGAGCATGGTAGAAGAACTGGTGTTGTGTAT TTTTGACGATTGTAGTTTTAATGCTTGTTGACAAGTGCCAGGAAGAAGAA GGGTGAAAGAATCAGTGGATATTTCGGTAAGGTCATGAAAATTTTTATTG CAAGTAATATTAGATGGGGGGGTTTGTACTTTTACGGTGTGACGGGATTG GCTCTTTTTTAGTACAGGGAAAAAAAGACGGAAAAATGGTATTTTAGAAT CAGAGGTGACGGTATTTGGCCTTATTTTTTGTGATTATGCCGGTATTTGA ACCTGTACAAACCGGTGTGACGGTGTTATTATTTTTTTCAATTTTCGGGA TTCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGTGTTCTTTAGAAAA AGTTATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCAAATAAG AGCTTGTAAAAACTCCAGCTTGTCCCGTATTCGGACTATTATTTTTAGCT TTAAATCTTAAAAGGTTAATTAAATTAGTATTTTATATCCATTATACAAT TTACTATATGGCATGACATATTTTTGAAGCCCATCTCCTAGCAGCTAAAG GTCATGCATACCATTCAGGGATGAAATGAATGTACCGCACAAAGGCATTA TAGAAAAATATTTTTTCAAAAATTCTTTTGCGAAATCGATATAGATTGAT AAGGAAAGGTCACAAAGGTACTTTTTCTAGAGTCGTTATTTCAAATCTTG CACGGATCGAAATTTGTATAATTGGTAGAAATTCAAAATTGAAATTACCT TAAGTGAAGACATTTTCGCGGGGAAAAGAATTTGGCCGGTTCGGCGAATT TTACTAAAATTCTCCAAATTGGGTTTCCTTCGAAAGTATTTTTTTTCTGT CATCAACAAAACAAAATTCCCACTAAATTTATTTTATTTTTATGCGTAGC CCGAAATTCATACTATTTCAAGCTTTAGACAGGTTTTTTTTTGCTTAGAA ACCGCCAAAATAGTTTCCCGCCAAATTTATTCTCTTCCAGCTATCCGCTA AATTTAATTTCCACCAAAATTTCTTCCTTTGAGGTAGTTGAACTTAGAAA GTTAGTTAGTTAACAAGAAATGTGTATTTCTCAACAAGAAAAATGCATCT CATAGCCCAAAAAATGAAAATTCAACTTTTGACATCTCTTTGCATTATAG CAAGCATACGAAAAACGTCAAGATATAAATCCACCAAAGTGATCAACATG AAATACTATCAAGTTCTCACAATATGTGCCGTGTTGGTTTGTTTATTGTC GATATCAGAATCGCGAAGCATCGCCAAGCGTACGAACAACTATATCACTT ACGAGACTTGCATCAAACATGCAGATGACAATAACGAAACGTGTTACGCT GATATTCCTTGGTTTTCGAACGAATTTACCAATGATGATAAACTTGCCAT GAATGACGCATGCGTGAAAAAACACCAAGACGAACATCATTTATGTCTGA TGGAACGCCAAGAAGCTCAAAAACATGAACATGCATCATCATCATGAATA TTTTCCAACTTTTATGTATTAGTATAATGTCTTTTACACAGTAGACAAAA AAATATGAACACACATCATGAACTTATTTTAACACTTTTCTATTGGTGAT GTCTTTTTCGCATTAGGGGCCGTCCACATAGTACTTACGCACTAAGGGGG AAGGGGGGTCTTCTCAAAAGCGGGGAGGGGAGGGGTCAAAAGAAAATATA CGTACGCAGAAAAAAAAATTTCATAGCCCTTTTTTGCTTGTTTTCCTGTC GACTTTTAATACGCATCAAGGAAAAGAAATAAATTCTTAATAAACATTGA GTTTCATGTATGAAATAAAGCTCCAAACCAAACGATTTGAATTCGAAATT TTCTTCAACCAAGGAGGGGGGGGGGTTTAAATGAAAAAGTACGTACTTAC CAGGGGGTACTCAATTTTCGACATTTTAGTGCGTACGTACTATGTGGACA GCCTAGATAAAATTTGTATTTTCCTTTCCGGGAAACAGAAATATTGTCAG GTTTAATAGCAAACCTGGAAGGGTTATTGTATGTTTGAGTGATGTTAGGA TGTGGTCGTGTATTCAATAGGCTTCGAATTGAGCAATTATCAGTACACCC CTCTGTCTCAGTGCCCCGGTAGAACTTTTTCCCTCAGTGGGGATGAAAAT TTCTATCAAAATACCAATGGGGATAGAAAATCTATTGTTTCCAGCTCGAA AATTCCAGTGGGGATGGTTTTGGAGTGCAATTTTTTACATTCAGTTTTCA ATGGGGATAAAATCATAGTGCAATTTCGCAGTGGGGTTGAAATTGTAGGA TATTTTTTCCACCGGGGACGATTTTTTGTCCTATTTTTCCACTGGGGTGG GGGGTCCACCGGGTCTGTGACACAGGGGTGTATCAGTTCTCGTTTTGGAC AACTTATTGTTTCCCAACTAAAAGCCCTAGTGTTTCGTAAGTTAGTTAAT GTATGGTTTTTTTGTACCGTAGTGGTGTAGACAATCACTTTGCCTGCCAT TTTAAACCAGTCGATTTTGCGGACTAACATTGCAAATAGTTTCAAATTGT TTCAGCTTTTCTTCTCTCTTCAAAAGCTTTTAACAAACTCGCTATTTTTC TACATGTGCGAAATATTCTATTTTAAAGATTTTTCGGTGAAGATATGTTT TAGCTAGATTAATGCATCAGAAACCCATTACATGTTTTTTTTTATAAGCA TATAAGAATCCAAAAACAGGCTCAGAGATACTTAGGTCGAAAGATTAATA AGGCTGAAAGAATGCTTGAGGGATCTTATATCCGAAGCAAAAATTTAAGG AAATACTGAAAGCCGTAAAATTCCAGCCAAAAAAAGCCAAAATCAGGAAA AAACATTTTTCGTAGGCTCAAGTAATGCTTGCCATATGCTTAATTTTTCC CCATATCTGAGCCTAGATATGCTTATAAGTACAATGCTTATAAAAAAACA TGTAGCAACTTTTTAGACAGAACTAGAACTAAATTACATAAATTCTTCTG GTATAAGGTGATATAATTTACGAAAAAAATTATCTTAGTTAAGTTATTAA AACATAACATTAATATAATACGGATAGCTTACAAATATAAAAATATTACA CTTAAAATCATCTGTTCTGCCTTGGCTATATATTTCTTGCGTGTTCTTCA ATATTTTCATTTTTTCGAATAATTTTGCTCAAACTTTGTCTATCAACGCT GAAGTTTTTTCCCGTAATTTGCCAATCAATCAATTTATTTTAAATCCTCA TGCATTCTCGCATAGGGCACCAAATCAAACAATAAGGCTTTTCTTATCTT TTGTTTTGGATTTTGGAATAATCAGTGCCTATAATTTATTATAATTCCAT GCAACTAATACACATTTAGGGTTGTCCCTTTCGGCGCGAAATCCACCGGA AACTGTTAAGTATCCCTCTTCCAATAAACCAATAAACGATCCTGTTTCAT ATCACGTGGTAACGATCCTTGTCTTCTGATTGGCTATCACCATTAAACTT CCAATAAACCAATCAAACGATCCTCTTTCATATCACGTGGTAATGATCCT TGTCTTCTGATTGGCTATCACCATTAACCAATCCATTATCTTTGTTTGAA ATAGACAATAGATTTTCGTTCGATTTGTATTTCTTGATAATTGCTTTCGC TTTGTCAAAATCTGTATCAAGATTTTTGAGAGCGGCGGACCTTTTCGATT GACGTTCTTTGGCTTCTGCTAAACGACGTTCTAAATATGGACTTGACGTT CGCAATGTCTAG

Coding sequence (CDS) from alignment at sc0000001:1451572..1456783-

>TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000001:1451572..1456783- (Clytia hemisphaerica)
ATGAAATACTATCAAGTTCTCACAATATGTGCCGTGTTGGTTTGTTTATT
GTCGATATCAGAATCGCGAAGCATCGCCAAGCGTACGAACAACTATATCA
CTTACGAGACTTGCATCAAACATGCAGATGACAATAACGAAACGTGTTAC
GCTGATATTCCTTGGTTTTCGAACGAATTTACCAATGATGATAAACTTGC
CATGAATGACGCATGCGTGAAAAAACACCAAGACGAACATCATTTATGTC
TGATGGAACGCCAAGAAGCTCAAAAACATGAACATGCATCATCATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000115XLOC_000115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000211-proteinTCONS_00000211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000211-exon-sc0000001-1575043694:1456408..1456783TCONS_00000211-exon-sc0000001-1575043694:1456408..1456783Clytia hemisphaericaexon
TCONS_00000211-exon-sc0000001-1575043694:1451572..1454183TCONS_00000211-exon-sc0000001-1575043694:1451572..1454183Clytia hemisphaericaexon
TCONS_00000211-exon-sc0000001-1510915933:1456408..1456783TCONS_00000211-exon-sc0000001-1510915933:1456408..1456783Clytia hemisphaericaexon
TCONS_00000211-exon-sc0000001-1510915933:1451572..1454183TCONS_00000211-exon-sc0000001-1510915933:1451572..1454183Clytia hemisphaericaexon
TCONS_00000211-exon-sc0000001-1491911889:1456408..1456783TCONS_00000211-exon-sc0000001-1491911889:1456408..1456783Clytia hemisphaericaexon
TCONS_00000211-exon-sc0000001-1491911889:1451572..1454183TCONS_00000211-exon-sc0000001-1491911889:1451572..1454183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1451572..1456783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.427521 0.350188 0.584868 0.90152 0.173305 0.254361 67.3037 73.975 168.927 101.524 162.022 207.88 0.198516 0.273351 0.127828 0.194335 0.662819 1.29096 0.399988 0.123588 2.53177 2.05954 0.0905964 0.194375 0.159778 0.221259 0.226714 0.201984 0.13537 0.149877
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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