|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=transcript|length=2988bp
aggcgctgtggtatagtggtcattgaccttggttgctgcacaggtgactg
aggtttgattcccactcgcagctgttcacttggcaagtgaataaaccttc
gcccgggtcaacccatgccatgtgaggagaATTGAGTAGCCAgtcgaaaa
taggcctcaaagccttctgcaactcaaccaaataaaaaatagaaaaatga
taTTGAGATAGTTTACACTTTCctattgaagaagaagaagcaaTGAAAAT
GTATGAAGTTCGAAACAAAAGAGCATGGTAGAAGAACTGGTGTTGTGTAT
TTTTGACGATTGTAGTTTTAATGCTTGTTGACAAGTGCCAGGAAGAAGAA
GGGTGAAAGAATCAGTGGATATTTCGCAAGCATACGAAAAACGTCAAGAT
ATAAATCCACCAAAGTGATCAACATGAAATACTATCAAGTTCTCACAATA
TGTGCCGTGTTGGTTTGTTTATTGTCGATATCAGAATCGCGAAGCATCGC
CAAGCGTACGAACAACTATATCACTTACGAGACTTGCATCAAACATGCAG
ATGACAATAACGAAACGTGTTACGCTGATATTCCTTGGTTTTCGAACGAA
TTTACCAATGATGATAAACTTGCCATGAATGACGCATGCGTGAAAAAACA
CCAAGACGAACATCATTTATGTCTGATGGAACGCCAAGAAGCTCAAAAAC
ATGAACATGCATcatcatcatgaatattttccaacttttatGTATTAGTA
TAATGTCTTTTACACAGTAGACAAAAAAATATGAACACACATCATGAACT
TATTTTAACACTTTTCTATTGGTGATGTCTTTTTCGCattaggggccgtc
cacatagtacttacgcactaagggggaaggggggtcttctcaaaagcggg
gaggggaggggtcaaaagaaaatatacgtacgcagaaaaaaaaatttcat
agcccttttttgcttgttttccTGTCGACTTTtaatacgcatcaaggaaa
agaaataaattcttaataaacattgagtttcatgtatgaaataaagctcc
aaaccaaacgatttgaattcgaaattttcttcaaccaaggaggggggggg
gtttaaatgaaaaagtacgtacttaccagggggtactcaattttcgacat
tttagtgcgtacgtactatgtggacagcCTAGATAAAATTTGTATTTTCC
TTTCCGGGAAACAGAAATATTGTCAGGTTTAATAGCAAACCTGGAAGGGT
TATTGTATGTTTGAGTGATGTTAGGATGTGGTCGTGTATTCAATAGGCTT
CGAATTGAGCAATTATCAGTACACCCctctgtctcagtgccccggtagaa
ctttttccctcagtggggatgaaaatttctatcaaaataccaatggggat
agaaaatctattgtttccagctcgaaaattccagtggggatggttttgga
gtgcaattttttacattcagttttcaatggggataaaatcatagtgcaat
ttcgcagtggggttgaaattgtaggatattttttccaccggggacgattt
tttgtcctatttttccactggggtggggggtccaccgggtctgtgacaca
ggggtgtatcagTTCTCGTTTTGGACAACTTATTGTTTCCCAACTAAAAG
CCCTAGTGTTTCGTAAGTTAGTTAATGTATGGTTTTTTTGTACCGTAGTG
GTGTAGACAATCACTTTGCCTGCCATTTTAAACCAGTCGATTTTGCGGAC
TAACATTGCAAAtagtttcaaattgtttcagcTTTTCTTCTCTCTTCAAA
AGCTTTTAACAAACTCGCTATTTTTCTACATGTGCGAAATAttctatttt
aaagatttttcggTGAAGATATGTTTTAGCTAGATTAATGCATCAGAAAc
ccattacatgtttttttttataagcatataagaatccaaaaacaggctca
gagatacTTAGGTCGAAAGATTAATAAGGCTGAAAGAATGCTTGAGGGAT
CTTATATCCGAAGCAAAAATTTAAGGAAATACTGAAAgccgtaaaattcc
agccaaaaaaagccaaaatcaggaaaaaacatttttcgtaggctcaagta
atgcttgccatatgcttaatttttccccatatctgagcctagatatgctt
ataagtacaatgcttataaaaaaacatgtagcaaCTTTTTAGACAGAACT
AGAACTAAATTACATAAATTCTTCTGGTATAAGGTGATATAATTTACGAA
AAAAATTATCTTAGTTAAGTTATTAAAACATAACATTAATATAATACGGA
TAGCTtacaaatataaaaatattacaCTTAAAATCATCTGTTCTGCCTTG
GCTATATATTTCTTGCGTgttcttcaatattttcattttttcgaatAATT
TTGCTCAAACTTTGTCTATCAACGCTGAAGTTTTTTCCCGTAATTTGCCA
ATCaatcaatttattttaaatCCTCATGCATTCTCGCATAGGGCACCAAA
TCAAACAATAAGGCTTTTCTTATCTTTTGTTTTGGATTTTGGAATAATCA
GTGCCTATAATTTATTATAATTCCATGCAACTAATACACATTTAGGGTTG
TCCCTTTCGGCGCGAAATCCACCGGAAACTGTTAAGTATCCCTCTTCCAA
TAAACCAATAAACGATCCTGTTTCATATCACGTGGTAACGATCCTTGTCT
TCTGATTGGCTATCACCATTAAACTTCCAATAAACCAATCAAACGATCCT
CTTTCATATCACGTGGTAATGATCCTTGTCTTCTGATTGGCTATCACCAT
TAACCAATCCATTATCTTTGTTTGAAATAGACAATAGATTTTCGTTCGAT
TTGTATTTCTTGATAATTGCTTTCGCTTTGTCAAAATCTGTATCAAGATT
TTTGAGAGCGGCGGACCTTTTCGATTGACGTTCTTTGGCTTCTGCTAAAC
GACGTTCTAAATATGGACTTGACGTTCGCAATGTCTAG Run BLAST on NCBI protein sequence of TCONS_00000211-protein >TCONS_00000211-protein ID=TCONS_00000211-protein|Name=TCONS_00000211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MKYYQVLTICAVLVCLLSISESRSIAKRTNNYITYETCIKHADDNNETCY
ADIPWFSNEFTNDDKLAMNDACVKKHQDEHHLCLMERQEAQKHEHASSS Run BLAST on NCBI transcript from alignment at sc0000001:1451572..1456783- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=transcript|length=5212bp|location=Sequence derived from alignment at sc0000001:1451572..1456783- (Clytia hemisphaerica)
AGGCGCTGTGGTATAGTGGTCATTGACCTTGGTTGCTGCACAGGTGACTG
AGGTTTGATTCCCACTCGCAGCTGTTCACTTGGCAAGTGAATAAACCTTC
GCCCGGGTCAACCCATGCCATGTGAGGAGAATTGAGTAGCCAGTCGAAAA
TAGGCCTCAAAGCCTTCTGCAACTCAACCAAATAAAAAATAGAAAAATGA
TATTGAGATAGTTTACACTTTCCTATTGAAGAAGAAGAAGCAATGAAAAT
GTATGAAGTTCGAAACAAAAGAGCATGGTAGAAGAACTGGTGTTGTGTAT
TTTTGACGATTGTAGTTTTAATGCTTGTTGACAAGTGCCAGGAAGAAGAA
GGGTGAAAGAATCAGTGGATATTTCGGTAAGGTCATGAAAATTTTTATTG
CAAGTAATATTAGATGGGGGGGTTTGTACTTTTACGGTGTGACGGGATTG
GCTCTTTTTTAGTACAGGGAAAAAAAGACGGAAAAATGGTATTTTAGAAT
CAGAGGTGACGGTATTTGGCCTTATTTTTTGTGATTATGCCGGTATTTGA
ACCTGTACAAACCGGTGTGACGGTGTTATTATTTTTTTCAATTTTCGGGA
TTCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGTGTTCTTTAGAAAA
AGTTATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCAAATAAG
AGCTTGTAAAAACTCCAGCTTGTCCCGTATTCGGACTATTATTTTTAGCT
TTAAATCTTAAAAGGTTAATTAAATTAGTATTTTATATCCATTATACAAT
TTACTATATGGCATGACATATTTTTGAAGCCCATCTCCTAGCAGCTAAAG
GTCATGCATACCATTCAGGGATGAAATGAATGTACCGCACAAAGGCATTA
TAGAAAAATATTTTTTCAAAAATTCTTTTGCGAAATCGATATAGATTGAT
AAGGAAAGGTCACAAAGGTACTTTTTCTAGAGTCGTTATTTCAAATCTTG
CACGGATCGAAATTTGTATAATTGGTAGAAATTCAAAATTGAAATTACCT
TAAGTGAAGACATTTTCGCGGGGAAAAGAATTTGGCCGGTTCGGCGAATT
TTACTAAAATTCTCCAAATTGGGTTTCCTTCGAAAGTATTTTTTTTCTGT
CATCAACAAAACAAAATTCCCACTAAATTTATTTTATTTTTATGCGTAGC
CCGAAATTCATACTATTTCAAGCTTTAGACAGGTTTTTTTTTGCTTAGAA
ACCGCCAAAATAGTTTCCCGCCAAATTTATTCTCTTCCAGCTATCCGCTA
AATTTAATTTCCACCAAAATTTCTTCCTTTGAGGTAGTTGAACTTAGAAA
GTTAGTTAGTTAACAAGAAATGTGTATTTCTCAACAAGAAAAATGCATCT
CATAGCCCAAAAAATGAAAATTCAACTTTTGACATCTCTTTGCATTATAG
CAAGCATACGAAAAACGTCAAGATATAAATCCACCAAAGTGATCAACATG
AAATACTATCAAGTTCTCACAATATGTGCCGTGTTGGTTTGTTTATTGTC
GATATCAGAATCGCGAAGCATCGCCAAGCGTACGAACAACTATATCACTT
ACGAGACTTGCATCAAACATGCAGATGACAATAACGAAACGTGTTACGCT
GATATTCCTTGGTTTTCGAACGAATTTACCAATGATGATAAACTTGCCAT
GAATGACGCATGCGTGAAAAAACACCAAGACGAACATCATTTATGTCTGA
TGGAACGCCAAGAAGCTCAAAAACATGAACATGCATCATCATCATGAATA
TTTTCCAACTTTTATGTATTAGTATAATGTCTTTTACACAGTAGACAAAA
AAATATGAACACACATCATGAACTTATTTTAACACTTTTCTATTGGTGAT
GTCTTTTTCGCATTAGGGGCCGTCCACATAGTACTTACGCACTAAGGGGG
AAGGGGGGTCTTCTCAAAAGCGGGGAGGGGAGGGGTCAAAAGAAAATATA
CGTACGCAGAAAAAAAAATTTCATAGCCCTTTTTTGCTTGTTTTCCTGTC
GACTTTTAATACGCATCAAGGAAAAGAAATAAATTCTTAATAAACATTGA
GTTTCATGTATGAAATAAAGCTCCAAACCAAACGATTTGAATTCGAAATT
TTCTTCAACCAAGGAGGGGGGGGGGTTTAAATGAAAAAGTACGTACTTAC
CAGGGGGTACTCAATTTTCGACATTTTAGTGCGTACGTACTATGTGGACA
GCCTAGATAAAATTTGTATTTTCCTTTCCGGGAAACAGAAATATTGTCAG
GTTTAATAGCAAACCTGGAAGGGTTATTGTATGTTTGAGTGATGTTAGGA
TGTGGTCGTGTATTCAATAGGCTTCGAATTGAGCAATTATCAGTACACCC
CTCTGTCTCAGTGCCCCGGTAGAACTTTTTCCCTCAGTGGGGATGAAAAT
TTCTATCAAAATACCAATGGGGATAGAAAATCTATTGTTTCCAGCTCGAA
AATTCCAGTGGGGATGGTTTTGGAGTGCAATTTTTTACATTCAGTTTTCA
ATGGGGATAAAATCATAGTGCAATTTCGCAGTGGGGTTGAAATTGTAGGA
TATTTTTTCCACCGGGGACGATTTTTTGTCCTATTTTTCCACTGGGGTGG
GGGGTCCACCGGGTCTGTGACACAGGGGTGTATCAGTTCTCGTTTTGGAC
AACTTATTGTTTCCCAACTAAAAGCCCTAGTGTTTCGTAAGTTAGTTAAT
GTATGGTTTTTTTGTACCGTAGTGGTGTAGACAATCACTTTGCCTGCCAT
TTTAAACCAGTCGATTTTGCGGACTAACATTGCAAATAGTTTCAAATTGT
TTCAGCTTTTCTTCTCTCTTCAAAAGCTTTTAACAAACTCGCTATTTTTC
TACATGTGCGAAATATTCTATTTTAAAGATTTTTCGGTGAAGATATGTTT
TAGCTAGATTAATGCATCAGAAACCCATTACATGTTTTTTTTTATAAGCA
TATAAGAATCCAAAAACAGGCTCAGAGATACTTAGGTCGAAAGATTAATA
AGGCTGAAAGAATGCTTGAGGGATCTTATATCCGAAGCAAAAATTTAAGG
AAATACTGAAAGCCGTAAAATTCCAGCCAAAAAAAGCCAAAATCAGGAAA
AAACATTTTTCGTAGGCTCAAGTAATGCTTGCCATATGCTTAATTTTTCC
CCATATCTGAGCCTAGATATGCTTATAAGTACAATGCTTATAAAAAAACA
TGTAGCAACTTTTTAGACAGAACTAGAACTAAATTACATAAATTCTTCTG
GTATAAGGTGATATAATTTACGAAAAAAATTATCTTAGTTAAGTTATTAA
AACATAACATTAATATAATACGGATAGCTTACAAATATAAAAATATTACA
CTTAAAATCATCTGTTCTGCCTTGGCTATATATTTCTTGCGTGTTCTTCA
ATATTTTCATTTTTTCGAATAATTTTGCTCAAACTTTGTCTATCAACGCT
GAAGTTTTTTCCCGTAATTTGCCAATCAATCAATTTATTTTAAATCCTCA
TGCATTCTCGCATAGGGCACCAAATCAAACAATAAGGCTTTTCTTATCTT
TTGTTTTGGATTTTGGAATAATCAGTGCCTATAATTTATTATAATTCCAT
GCAACTAATACACATTTAGGGTTGTCCCTTTCGGCGCGAAATCCACCGGA
AACTGTTAAGTATCCCTCTTCCAATAAACCAATAAACGATCCTGTTTCAT
ATCACGTGGTAACGATCCTTGTCTTCTGATTGGCTATCACCATTAAACTT
CCAATAAACCAATCAAACGATCCTCTTTCATATCACGTGGTAATGATCCT
TGTCTTCTGATTGGCTATCACCATTAACCAATCCATTATCTTTGTTTGAA
ATAGACAATAGATTTTCGTTCGATTTGTATTTCTTGATAATTGCTTTCGC
TTTGTCAAAATCTGTATCAAGATTTTTGAGAGCGGCGGACCTTTTCGATT
GACGTTCTTTGGCTTCTGCTAAACGACGTTCTAAATATGGACTTGACGTT
CGCAATGTCTAG Coding sequence (CDS) from alignment at sc0000001:1451572..1456783- >TCONS_00000211 ID=TCONS_00000211|Name=TCONS_00000211|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000001:1451572..1456783- (Clytia hemisphaerica)
ATGAAATACTATCAAGTTCTCACAATATGTGCCGTGTTGGTTTGTTTATT
GTCGATATCAGAATCGCGAAGCATCGCCAAGCGTACGAACAACTATATCA
CTTACGAGACTTGCATCAAACATGCAGATGACAATAACGAAACGTGTTAC
GCTGATATTCCTTGGTTTTCGAACGAATTTACCAATGATGATAAACTTGC
CATGAATGACGCATGCGTGAAAAAACACCAAGACGAACATCATTTATGTC
TGATGGAACGCCAAGAAGCTCAAAAACATGAACATGCATCATCATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000211-exon-sc0000001-1575043694:1456408..1456783 | TCONS_00000211-exon-sc0000001-1575043694:1456408..1456783 | Clytia hemisphaerica | exon |
| TCONS_00000211-exon-sc0000001-1575043694:1451572..1454183 | TCONS_00000211-exon-sc0000001-1575043694:1451572..1454183 | Clytia hemisphaerica | exon |
| TCONS_00000211-exon-sc0000001-1510915933:1456408..1456783 | TCONS_00000211-exon-sc0000001-1510915933:1456408..1456783 | Clytia hemisphaerica | exon |
| TCONS_00000211-exon-sc0000001-1510915933:1451572..1454183 | TCONS_00000211-exon-sc0000001-1510915933:1451572..1454183 | Clytia hemisphaerica | exon |
| TCONS_00000211-exon-sc0000001-1491911889:1456408..1456783 | TCONS_00000211-exon-sc0000001-1491911889:1456408..1456783 | Clytia hemisphaerica | exon |
| TCONS_00000211-exon-sc0000001-1491911889:1451572..1454183 | TCONS_00000211-exon-sc0000001-1491911889:1451572..1454183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1451572..1456783 - |
Blast
The following BLAST results are available for this feature:
|
