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TCONS_00000188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000188
Unique NameTCONS_00000188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000188 ID=TCONS_00000188|Name=TCONS_00000188|organism=Clytia hemisphaerica|type=transcript|length=782bp
gtaacatttggcaagtcagtgtggaaacaatttgtagccatgtgctacct
aaattgtgcagactaccgggctaccttaatggagcagcctgtttgtttct
acaaaaccttagaaagataacagtaacattggcaagtcagtgtggaaaca
atttgtagtcatgtgctacctaaattgtgcagactaccgggctaccttaa
tggagcagCCCGTTTGCTTCTGCGTAAAAACCTTGAAtactattttggac
tttttttctGGTACAAGCCATTTATATTGAAATCAAAGCTCTtcgtattt
ttttttcaggaaaagtgAAGTGCAAACCCGGAAGTGAAACGTCATCTACA
TGTCTACATCTCTACAAGTCGTCTTCAAAAGGAGACTGATCGACCGAACG
CAAGAAAGAAAGAACTGTTTGCCTGAGATGCCAAGACTAATGGTAGAAGT
TAGGACATGGAAATCGTTTATCGATGTACGGTAGCAAGATTTTGACGGTG
GAGCCGCTTCCACTCGGTTTCTTATGTTTAATGGTTTTGTTTTACTTGCT
CCACGAATACTATCCAACAGACAGAGCTGATTACCTGCATGCATGACAAT
CTAGCACCGGATCGTCTTCAAAGACACTTGTTGTAATGATTCTCATTACG
AAAGCTTTAATAATGCAGTAAAAGGACTTCAGAATTTCTACCCAGCGATT
TCGACACCTCTATGTCACAGAGCCGCTGGGACCCCCGcccaactggaaaa
tttgacaaaaatttcgtgcCGGTAGGAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000001:1048928..1049884-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000188 ID=TCONS_00000188|Name=TCONS_00000188|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at sc0000001:1048928..1049884- (Clytia hemisphaerica)
GTAACATTTGGCAAGTCAGTGTGGAAACAATTTGTAGCCATGTGCTACCT AAATTGTGCAGACTACCGGGCTACCTTAATGGAGCAGCCTGTTTGTTTCT ACAAAACCTTAGAAAGATAACAGTAACATTGGCAAGTCAGTGTGGAAACA ATTTGTAGTCATGTGCTACCTAAATTGTGCAGACTACCGGGCTACCTTAA TGGAGCAGCCCGTTTGCTTCTGCGTAAAAACCTTGAATACTATTTTGGAC TTTTTTTCTGGTACAAGCCATTTATATTGAAATCAAAGCTCTTCGTATTT TTTTTTCAGGAAAAGTGAAGTGCAAACCCGGAAGTGAAACGTCATCTACA TGTCTACATCTCTACAAGTCGTCTTCAAAAGGTAAGAAAATTTCTGTAAT TGTTTACCCAGCACCTTCAATATTTGCGTCTTCATTACTCCAAGTACAAA ATCTCTTCAGAGTCATTTAGCAAACGTAGGTGGAAAGAAGCACTTACTTA TCTTTGAGTTATGTTGGCTTGTGAAGTCTAATATATTCTAATTTCCTTTT CTACAGGAGACTGATCGACCGAACGCAAGAAAGAAAGAACTGTTTGCCTG AGATGCCAAGACTAATGGTAGAAGTTAGGACATGGAAATCGTTTATCGAT GTACGGTAGCAAGATTTTGACGGTGGAGCCGCTTCCACTCGGTTTCTTAT GTTTAATGGTTTTGTTTTACTTGCTCCACGAATACTATCCAACAGACAGA GCTGATTACCTGCATGCATGACAATCTAGCACCGGATCGTCTTCAAAGAC ACTTGTTGTAATGATTCTCATTACGAAAGCTTTAATAATGCAGTAAAAGG ACTTCAGAATTTCTACCCAGCGATTTCGACACCTCTATGTCACAGAGCCG CTGGGACCCCCGCCCAACTGGAAAATTTGACAAAAATTTCGTGCCGGTAG GAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000110XLOC_000110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000188-exon-sc0000001-1575043694:1049504..1049884TCONS_00000188-exon-sc0000001-1575043694:1049504..1049884Clytia hemisphaericaexon
TCONS_00000188-exon-sc0000001-1575043694:1048928..1049328TCONS_00000188-exon-sc0000001-1575043694:1048928..1049328Clytia hemisphaericaexon
TCONS_00000188-exon-sc0000001-1510915933:1049504..1049884TCONS_00000188-exon-sc0000001-1510915933:1049504..1049884Clytia hemisphaericaexon
TCONS_00000188-exon-sc0000001-1510915933:1048928..1049328TCONS_00000188-exon-sc0000001-1510915933:1048928..1049328Clytia hemisphaericaexon
TCONS_00000188-exon-sc0000001-1491911889:1049504..1049884TCONS_00000188-exon-sc0000001-1491911889:1049504..1049884Clytia hemisphaericaexon
TCONS_00000188-exon-sc0000001-1491911889:1048928..1049328TCONS_00000188-exon-sc0000001-1491911889:1048928..1049328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1048928..1049884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68483 2.02816 0.692551 0.710216 1.79012 1.42038 3.00201 4.82983 8.38749 7.10311 12.37 10.0031 8.32973 10.8384 7.55202 6.76246 20.1741 25.8642 3.85332 3.92984 23.1409 23.5286 12.1059 13.2701 15.4568 14.0483 5.31898 5.65493 69.9241 84.8641
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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