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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000181 ID=TCONS_00000181|Name=TCONS_00000181|organism=Clytia hemisphaerica|type=transcript|length=1900bpRun BLAST on NCBI protein sequence of TCONS_00000181-protein >TCONS_00000181-protein ID=TCONS_00000181-protein|Name=TCONS_00000181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp MWKSLALVLVVLCILEQGQCEVFTSMANMENLAETEQLLFSSFKTYLQAERun BLAST on NCBI transcript from alignment at sc0000001:976137..990982- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000181 ID=TCONS_00000181|Name=TCONS_00000181|organism=Clytia hemisphaerica|type=transcript|length=14846bp|location=Sequence derived from alignment at sc0000001:976137..990982- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:976137..990982- >TCONS_00000181 ID=TCONS_00000181|Name=TCONS_00000181|organism=Clytia hemisphaerica|type=CDS|length=17919bp|location=Sequence derived from alignment at sc0000001:976137..990982- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000181 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2) HSP 1 Score: 397.127 bits (1019), Expect = 4.045e-130 Identity = 225/536 (41.98%), Postives = 323/536 (60.26%), Query Frame = 1
Query: 160 VLVVLCILEQGQCE--VFTSMANMENLAETEQLLFSSFKTYLQAEEDRLKVLKNFMLRVEDAQKNVNLSDVAKYLGNPINTYLMLRRLSSEWRDVESFLSQDGEAAEDFKAIYDNAKMVLPTTEDHEGAMTALFRLQDTYKVPSNMLAKGIIPGVKSLSHHLEIREIYEIGLHAYDNQNYQYASEWMRTAYEEFGLNATIDGIKRNKVLDYLAYSEYKKGNLPEAFKLTKELAALKPKDKRILGNLEHYRYELRASQSTGKRGDPGTLTDEELYKNAKGGSQTEARSRRASLGDYEKLCRGEVRQQTKRELKKMKCWYK--TNDPTLILKPQKFERIWADPEIFMLRDVITNRQIEQLKEEAYPILKRATIQDPITGQLRHADYRVSKSAWLSPSRHEFVRQIALRAQSATNLDIRSSEQLQIANYGIGGHYEPHFDHAREDE-DKFTDLGMGNRIATVLYYLSDVEAGGATVFTVGKTAVFPSKGDAVFWYNLKRNGIGNPRTRHAACPVLVGTKWVSNFWIHEYNQEFRRPCAL 1752
+L++ +L Q FTS+ M +L TE+ L +S K Y++AEED+L+ +K + ++ D + D ++G+P+N + +++RL++EW ++E+ + +D ++ F + + P ED GA AL RLQDTY + ++ ++KG +PGVK S L + +E+G AY +Y + WM A + I I + VLDYL+Y+ Y++G+L +A LTK+L L P+ +R GNL+++ Y + + K +D++ KG + R+ YE LCRGE + T R KK+ C Y +P IL P K E W P I D+I++ +IE +K+ A P L+RATI +PITG L YR+SKSAWLS + V +I +R Q T LD+ ++E+LQ+ANYG+GG YEPHFD AR+DE D F +LG GNRIAT L+Y+SDV AGGATVF +V+P KG AVFWYNL +G G+ TRHAACPVLVG KWVSN W+HE QEFRRPC L
Sbjct: 5 ILIIGILLPQSLAHPGFFTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKL-DRLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKD--MSDGFISNLTIQRQYFPNDEDQVGAAKALLRLQDTYNLDTDTISKGNLPGVKHKSF-LTAEDCFELGKVAYTEADYYHTELWMEQALRQLD-EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQ-SDQKTTPKKKGVAVDYLPERQK----YEMLCRGEGIKMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTL 530 The following BLAST results are available for this feature:
BLAST of TCONS_00000181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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