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TCONS_00000174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000174
Unique NameTCONS_00000174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=transcript|length=967bp
gaatttttgataatatttaaaGCAAACATGGAAGAAACAAGTGCTGTTGA
AAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAAT
TGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGGAA
CTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAATAC
ATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACgattacaaaaa
ttgaaaatcttcaTATTGTACCTAATCTGAAGGAACTTTGGCTTTGTGAG
GGAAAAATACAGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAA
GTTATATATGTACAAAAATGAGCTGagtaaaatagaaaatatatcCCATT
TACTCACGTTGACAACATTAtggttgaataaaaacaaaattgaagtgaTA
GAGAATATGGAACAATTACGACAactcaaatttttgaatttgagtGATAA
TCAGATACATAGTATTGGTACATCACTAATTTGTTGTAATCTGTTAGAAG
AAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGGATATTACCAAC
ATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATCCTATGTG
TCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTATGTTTTGT
ATCATATGCCATCATTAAAAAGATTGGATTCAGTTgatgtttcaatgaaa
atgcTGAAAGAGGCTGCTGAGTCAACAGTCAATAAAAAGCGTATCTTCTA
CAAGATGAGAATTCGAACCATTCAACGGGAATGTATTGAGATGCGTGAAC
AGCTTAAAGAACACCTTGAGAATCTACGTGAAGAATCTGTCACTAGTATT
CATAAACTGTCAAATGCTACTAAAGAGCTTGAACGTGAGCTTGATGAGTT
GTCAACTAAGCCGGAGA
Run BLAST on NCBI

protein sequence of TCONS_00000174-protein

>TCONS_00000174-protein ID=TCONS_00000174-protein|Name=TCONS_00000174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
EFLIIFKANMEETSAVEKSESKANLGEDYWLQELCLSNGLDPKSDLSQVE
LLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCE
GKIQKLEGLEKNSKLEKLYMYKNELSKIENISHLLTLTTLWLNKNKIEVI
ENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITN
ISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMK
MLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEHLENLREESVTSI
HKLSNATKELERELDELSTKPE
Run BLAST on NCBI

transcript from alignment at sc0000001:705893..711578-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=transcript|length=5686bp|location=Sequence derived from alignment at sc0000001:705893..711578- (Clytia hemisphaerica)
GAATTTTTGATAATATTTAAAGCAAACATGGAAGAAACAAGTGCTGTTGA AAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAAT TGGTACGTATTTTTTTACTATGAATTAATAAGGTTTGTCTCTCTCGTGCT ATTTACTTTACCAGCAGCGTTTAGCAACCCTCAGGTTTTTAGGGGTACCA AACACAATGTCTTGAATGTATTTTTGATGTTATTTTAAAAACCATTTACA GGGTGCACCAGGTTGGTCTCATCTTGAGCATAGGATAAGCAAATCTAAAT TCATTGTTATCAAAAGACTACAATGTTTGTATGTGAGCTGCCTCTTCAAT CTAGTCATTCTTCTTTAGGGCATATTGCTTTACTGTCATCAATAATTTCC ATTATTTTTTCAGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGT CACAGGTGGAACTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCA TCATTGAATACATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTAC GATTACAAAAATTGAAAATCTTCATATTGTACCTAATCTGAAGGAACTTT GGCTTTGTGAGGGAAAAATACAGGTTTGTTCTGATATTCCATAGTTTACT TTTGTTTTTATGACAGGAAATAAGAAGTTGTTACTTTAATTCCTTAATTT TCATTTTTCCATTTGCAAGTGCTATTCTATAGTTTTAAAGGGTCTAATGA TCACCCACTTCTCAAGCCCCTAACATTAGAAAATGCCTTCCTTTTCAAAG TTGAATAATACTTAGTCGTTCGACTCACATACCACTCACATACCTTACTA GAAAGATCTTAATGATAAAGCGAACGTTTTGTCCTTAAAGAAAAAAAAAC AAGAGGACAGAAAATATTCCTGATGAAGGATTCATTTCGATCCCTCATCC AAAGAAACCCCCATTTCTCCTATTGTTTGATGAAAATCTTCTTTGTTTTT TGGATTAAGGTGAACTTTCTCTTGATTCGATTTTATTTTTATTTTTTTCT GATCTTTAGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAAGTT ATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCATTTAC TCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGATAGAG GTACTATTGTCATCTTTAGTACTTTTGAGTTAGTAAGTTTTAGCAAAATT TGCCAAAACTCTTCTAGTTCTAGTCAAAATTTAATTATCTGTAAATTTTG TCCAGATTCTTCTTCGAAACACCTTAACATTTCTCTTTTTTTTCAACTAA ACTTACAAAATGGTAGGTCATTTGTGAAAGTTAATTCATGCCAAATTTAA CTGTCATTCTGCTAAATTCTGCTAAATTCTGCTCAATTGTACTAAGTTTA ACTATTTTGGTTATTTGGCAAATGTTCTTCTGTCCAAAAGGTGGAAAGGC CTCATCCTAGCAAGGTCAGAGTTAAGATAGTAATTTAAAGGTATATCAAC AATTTAATTTTTTGATACACAGAAAGCAATTTAAGGACTACCAAAAGTTC AAAATTTCATTCTTGTACCATTTTGTAGGAAGCTTTTGACTGATTAGAAG CTAAGTCTCCGTTGCATTGGTTTCTGCGATAAAGATCAAACCATTGGGCC ATTTCATTAAATGTCCATACAGGAGGGTAGACGAACCTTTTCAAGTCAAA AAAAAAATTCTTGGAAATGTGTGGATTTCCCCTGGAAAATGGCATAATTT GAAAAAAAAACCTCAAAAACTTTCCTTTCATACCTTAAAGTATCTAAAGT TCTTCTACCCCCTGGGAATTTTGAAATAATTCTTTCCCCCCCCCCCCTCT GTATGGATATGAAATATAATGTTGCCAAATGATGTTGTCCCACAGGTTTT GGTAAATGTTTTTCTGTGTTTTGTTGTAAGAATATTTTATTGAAATACAG AATTATTCTTTTACTCTTTAGAATATGGAACAATTACGACAACTCAAATT TTTGAATTTGAGTGATAATCAGATACATAGTATTGGTTAGTTGTCATCAG TTTTTTTGATTCATTAAAATTATAAAGTTCATGGCTCTTTGACGATTTTC AACATTGTCTAATGTATTTGTTAGTCTCAAGATTACAATTATACGCTCTG AATTTCCAAAAAATACACCTGGTCTAAATATTGAAATACCTCTTAAAAAT AAAATTAGCTCCTCACATCTCTCTCAGTATTGATATTATCTTTATTGTCT CTATTCAGGTACATCACTAATTTGTTGTAATCTGTTAGAAGAAGTGAATC TATCTGGCAATAGAATAAATTCTCTCAAGGTATCATTTAGTATTGTTCTT CAATCATTTAGAAATTGAAATGCAACCCAAACCTTCCTTTTTTTGATTAT TGCTCAAAAAAGTAATGGAATTTAAACATGACATGAGATACATTCATGGA ATAGTTATTATTTTAAGTATTATTTTGTAAAAGTCCCGCTCGAGTTCAAA GAAGGAAACTTCAGACTTAAGTTTTCCTTGGTTATTATTGAATGCTACTT CATTATTACACACACTATAGTTTTTCGACTTCTTAGTAAAACTTGACTCA GAGTCATTTTCTTATTTAAAAATCCCTCAGTAACATTTCTTTTCCTCTTC AAAAATTTTGTTCTCTTTTAGGATATTACCAACATCTCATGCTTGAGGAA TCTCATAGCTTTGGATTTAAAAGATCCTATGTGTCATCCAAACCCTGTGA CACTACTATGCAATTATTCCACCTATGTTTTGTATCATATGCCATCATTA AAAAGATTGGATTCAGTTGATGTTTCAATGAAAATGCTGAAAGAGGCTGC TGAGGTATTTTGATACCTTAAGTGGATTAATTAGTGTGGACTTTTTTTCG CGAAACAAGAATCTAAAAAGTCTGTAGATTAAATCTTGCAAATCAGCCTC TTTTTTTAAATTCCTTTTTTTTCCCTAGGGTTTTGGCCAAAATCTTGATT TAATTTTTTTTGCAAGACTAAATTCCACAAAAAGGGCCAAACTCGCGAAA ATTAATCCACGCAAAATTTAATCCACTTAAGGTATCTCCTTGTGGGAACT CATAGAAAACAAGGAAAAAGTAACTATGGTCTTTTTCTACTTTGATGTGA TGAATTCTTGTGAAGCTAGTCTTCAATCCTGGAGAATTTTTGTGGTCTTA ATTTCACAGATGAGTGAAAAGCAATTTTTCATGGCGATAATTTCCACGAG GGAGTTTTCTATTCATTGAAATGAGGAAGTGTGTATTTTCTCGAGAATTA CATTATTTGCGGATGAAGCCTTTTTAAATTTCTCTCTTGAGTTATTTTTG CAGAAATACGCATAATATAATCCCCGCAATGCGCAAAAAACTTATCTCAT CAAAGCATCTAAAACACAAAAATTTCAATTCTAATGGTTATTAATGCATT AGATCACCCATTATTTCTTTGATAGTCAATTTCATTGGAGAACATGGATG ATTAGAATACAGTCCTCAATAAAAAACCTGAAATAAAATCTGCAATACAC CCCAAAGCTTAATTTAGCAAATTCTGCAAACATTATATAGATAGCACTTA GCAGATTGTATGGTTATGCAGGGCCCACGCTACTGAAAGGGAGGGGCCAT GGCCCCCCTCACTTTTTTTAAATAGAATTTTATTGGTTAAATATCACGGT TCATACTTTCGATAGCTTCGTTTCTAGGCAAATTCAGTCTNATAGAATTT TATTTGTTAAATATCACGGTTCATACTTTCAATACCTTCGTTTCTAGGCA AATTCAATACGAAATTGCGCTATTTAAACACTTTTTCTCCTTAGTCACTA TATTTTTGGCCCCTCCATTTTCCGGATCATGGTATGGGCCCTGTTATTTA GCTCTTATTCGTACATTTTATTTATCAAACTAAATCCTTTTCTCTTGCAG TCAACAGTCAATAAAAAGCGTATCTTCTACAAGATGAGAATTCGAACCAT TCAACGGGAATGTATTGAGATGCGTGAACAGCTTAAAGAACACCTTGAGA ATCTACGTGAAGAATCTGTCACTAGTATTCATAAACTGTCAAATGCTACT AAAGAGGTCTGTTTACATCATTACTACCCCAATGATACTTAGACTACACA ATATATCGGTGATCAATATTCAACAATTTTGCTTGCGGACCGTAATGTAC GAAGTAAACAACAGGTGCTCTATTATAAAAAGGAATTTTCTTTCTGTAAA CAATCCCCCTATATTGTTGGAATATTGCAAATCGAGCTGAAAATATATTG CGAACACCTTTTCAATATATTACCAGCATTCAACAATATATTCTCAATAT ATTGCCCGACAATATATTGTGTAGTGTATATAGCCCTATAGAATGAGTAA CTTATCAAAGTTATACTTGTAATAAAAAGGAAAAGTTATACTGCAAATAT AACTGTCTCTCAAATTAGGTTACCCCTTTTCTTGTCATGGGTCATCAGAG CTAGTCAGTCTCACCTTATTGTTATAGAGAAGGTAAAAAATTTCTCTTTA AAAAGACAACCCACTTTTTACCCTCTTTAATTCACAATCAAAATAGACAG GGAGAAAGTTGGCCATCTAAACTAGATCTTTATTACTTAACACCTATTAA CCCAAAACGCCTCCAAGGATTTGGGTCGAGGTTATCAGGAGGCAAATACC TTATCGGGGAAAAAAATGTCGGGGGAAAGTGACGAAAATTTTGAGGGGGT GGCTAAATTTTTCCCCGACGAACTTTTTCCCCGATATTCTAACACCCGAC CAAAACTTTTACCCAATTTTTCAACCCCCAACCAAAATTAAAATCTAAAT TTTTTACACCTTTAATAACCGAAATTAGTGCTTTAAACGTCGAATTACAA GATCTTTTTTCGCGCTAGTGAAGGAAACCATTTCATTTGGACAATTTAGT TGGGTGAAAGTGACTTAATTGTAAATTTCGTCGGGGAAAAGTGACGAATT TGAAATATTAGTCGGGGGAAAGTGATGCCTCTAGGTGACGAAATTTTTCC CCGACGAAAAAAAACCCCGACTAAATAAAACTCCGACATTTTTTTCCCCG ATAAGGTATTACATTTGATGTTAATCTTCCCTCCCTTCTTTAAAGTGTTA AATTCAAAACTTTCTTATGGTGTCGGGGTTGATACTTTTATATATTGTAA TCTATCAGTTACTACTTTAATCGGATTAAATTTCGCAACGAAAAAAATCG CGAAATTTTCTGGATTTAATTTCGTAAGTCAGAGTTTTGAAAAATTTCAC GTGGATTTAATTTCGCGAATAAGCCTGAAAACAGCTGAAAAATAGCCGTT TTTTAACACAAATGGAGACTTCGGGCTGGTTTCTCCGCCGAAAATGCGAT TTAAAAAATTTTGTGGTGGATTTAATTTGACGAGTCATAAATCTCACGCG TTTTCGCGAGTTTTAATTTCGTAAAAATGGCATAAATTTTAATCTCGCGA AAGTTAATCCGATTATGTCAATAGACTTTAATGATGTTTTAGGGTTGTAG CAACAGCTGCTATGAATCAAATCATATAGTTCTCTTTCTTTTTCAGCTTG AACGTGAGCTTGATGAGTTGTCAACTAAGCCGGAGA

Coding sequence (CDS) from alignment at sc0000001:705893..711578-

>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=CDS|length=7728bp|location=Sequence derived from alignment at sc0000001:705893..711578- (Clytia hemisphaerica)
CTTGAACGTGAGCTTGATGAGTTGTCAACTAAGCCGGAGTCAACAGTCAA
TAAAAAGCGTATCTTCTACAAGATGAGAATTCGAACCATTCAACGGGAAT
GTATTGAGATGCGTGAACAGCTTAAAGAACACCTTGAGAATCTACGTGAA
GAATCTGTCACTAGTATTCATAAACTGTCAAATGCTACTAAAGAGGATAT
TACCAACATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATC
CTATGTGTCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTAT
GTTTTGTATCATATGCCATCATTAAAAAGATTGGATTCAGTTGATGTTTC
AATGAAAATGCTGAAAGAGGCTGCTGAGGTACATCACTAATTTGTTGTAA
TCTGTTAGAAGAAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGA
ATATGGAACAATTACGACAACTCAAATTTTTGAATTTGAGTGATAATCAG
ATACATAGTATTGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGA
AGTTATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCAT
TTACTCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGAT
AGAGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGG
AACTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAAT
ACATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACGATTACAAA
AATTGAAAATCTTCATATTGTACCTAATCTGAAGGAACTTTGGCTTTGTG
AGGGAAAAATACAGGAATTTTTGATAATATTTAAAGCAAACATGGAAGAA
ACAAGTGCTGTTGAAAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTA
CTGGCTGCAAGAATTGCTTGAACGTGAGCTTGATGAGTTGTCAACTAAGC
CGGAGTCAACAGTCAATAAAAAGCGTATCTTCTACAAGATGAGAATTCGA
ACCATTCAACGGGAATGTATTGAGATGCGTGAACAGCTTAAAGAACACCT
TGAGAATCTACGTGAAGAATCTGTCACTAGTATTCATAAACTGTCAAATG
CTACTAAAGAGGATATTACCAACATCTCATGCTTGAGGAATCTCATAGCT
TTGGATTTAAAAGATCCTATGTGTCATCCAAACCCTGTGACACTACTATG
CAATTATTCCACCTATGTTTTGTATCATATGCCATCATTAAAAAGATTGG
ATTCAGTTGATGTTTCAATGAAAATGCTGAAAGAGGCTGCTGAGGTACAT
CACTAATTTGTTGTAATCTGTTAGAAGAAGTGAATCTATCTGGCAATAGA
ATAAATTCTCTCAAGAATATGGAACAATTACGACAACTCAAATTTTTGAA
TTTGAGTGATAATCAGATACATAGTATTGAAACTGGAAGGGCTTGAGAAG
AACAGCAAACTGGAGAAGTTATATATGTACAAAAATGAGCTGAGTAAAAT
AGAAAATATATCCCATTTACTCACGTTGACAACATTATGGTTGAATAAAA
ACAAAATTGAAGTGATAGAGTGTTTATCCAATGGACTTGACCCTAAAAGT
GATTTGTCACAGGTGGAACTGCTTGAGCTTTTTCTTAGTGTTATACCAAT
GGTACCATCATTGAATACATATCCTTCTTTAACAATTCTACGCATTGTTG
GTTGTACGATTACAAAAATTGAAAATCTTCATATTGTACCTAATCTGAAG
GAACTTTGGCTTTGTGAGGGAAAAATACAGGAATTTTTGATAATATTTAA
AGCAAACATGGAAGAAACAAGTGCTGTTGAAAAATCAGAGAGTAAAGCAA
ATCTTGGAGAAGATTACTGGCTGCAAGAATTGCTTGAACGTGAGCTTGAT
GAGTTGTCAACTAAGCCGGAGTCAACAGTCAATAAAAAGCGTATCTTCTA
CAAGATGAGAATTCGAACCATTCAACGGGAATGTATTGAGATGCGTGAAC
AGCTTAAAGAACACCTTGAGAATCTACGTGAAGAATCTGTCACTAGTATT
CATAAACTGTCAAATGCTACTAAAGAGGATATTACCAACATCTCATGCTT
GAGGAATCTCATAGCTTTGGATTTAAAAGATCCTATGTGTCATCCAAACC
CTGTGACACTACTATGCAATTATTCCACCTATGTTTTGTATCATATGCCA
TCATTAAAAAGATTGGATTCAGTTGATGTTTCAATGAAAATGCTGAAAGA
GGCTGCTGAGGTACATCACTAATTTGTTGTAATCTGTTAGAAGAAGTGAA
TCTATCTGGCAATAGAATAAATTCTCTCAAGAATATGGAACAATTACGAC
AACTCAAATTTTTGAATTTGAGTGATAATCAGATACATAGTATTGAAACT
GGAAGGGCTTGAGAAGAACAGCAAACTGGAGAAGTTATATATGTACAAAA
ATGAGCTGAGTAAAATAGAAAATATATCCCATTTACTCACGTTGACAACA
TTATGGTTGAATAAAAACAAAATTGAAGTGATAGAGTGTTTATCCAATGG
ACTTGACCCTAAAAGTGATTTGTCACAGGTGGAACTGCTTGAGCTTTTTC
TTAGTGTTATACCAATGGTACCATCATTGAATACATATCCTTCTTTAACA
ATTCTACGCATTGTTGGTTGTACGATTACAAAAATTGAAAATCTTCATAT
TGTACCTAATCTGAAGGAACTTTGGCTTTGTGAGGGAAAAATACAGGAAT
TTTTGATAATATTTAAAGCAAACATGGAAGAAACAAGTGCTGTTGAAAAA
TCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAATTGCT
TGAACGTGAGCTTGATGAGTTGTCAACTAAGCCGGAGTCAACAGTCAATA
AAAAGCGTATCTTCTACAAGATGAGAATTCGAACCATTCAACGGGAATGT
ATTGAGATGCGTGAACAGCTTAAAGAACACCTTGAGAATCTACGTGAAGA
ATCTGTCACTAGTATTCATAAACTGTCAAATGCTACTAAAGAGGATATTA
CCAACATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATCCT
ATGTGTCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTATGT
TTTGTATCATATGCCATCATTAAAAAGATTGGATTCAGTTGATGTTTCAA
TGAAAATGCTGAAAGAGGCTGCTGAGGTACATCACTAATTTGTTGTAATC
TGTTAGAAGAAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGAAT
ATGGAACAATTACGACAACTCAAATTTTTGAATTTGAGTGATAATCAGAT
ACATAGTATTGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAAG
TTATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCATTT
ACTCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGATAG
AGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGGAA
CTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAATAC
ATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACGATTACAAAAA
TTGAAAATCTTCATATTGTACCTAATCTGAAGGAACTTTGGCTTTGTGAG
GGAAAAATACAGGAATTTTTGATAATATTTAAAGCAAACATGGAAGAAAC
AAGTGCTGTTGAAAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACT
GGCTGCAAGAATTGCTTGAACGTGAGCTTGATGAGTTGTCAACTAAGCCG
GAGTCAACAGTCAATAAAAAGCGTATCTTCTACAAGATGAGAATTCGAAC
CATTCAACGGGAATGTATTGAGATGCGTGAACAGCTTAAAGAACACCTTG
AGAATCTACGTGAAGAATCTGTCACTAGTATTCATAAACTGTCAAATGCT
ACTAAAGAGGATATTACCAACATCTCATGCTTGAGGAATCTCATAGCTTT
GGATTTAAAAGATCCTATGTGTCATCCAAACCCTGTGACACTACTATGCA
ATTATTCCACCTATGTTTTGTATCATATGCCATCATTAAAAAGATTGGAT
TCAGTTGATGTTTCAATGAAAATGCTGAAAGAGGCTGCTGAGGTACATCA
CTAATTTGTTGTAATCTGTTAGAAGAAGTGAATCTATCTGGCAATAGAAT
AAATTCTCTCAAGAATATGGAACAATTACGACAACTCAAATTTTTGAATT
TGAGTGATAATCAGATACATAGTATTGAAACTGGAAGGGCTTGAGAAGAA
CAGCAAACTGGAGAAGTTATATATGTACAAAAATGAGCTGAGTAAAATAG
AAAATATATCCCATTTACTCACGTTGACAACATTATGGTTGAATAAAAAC
AAAATTGAAGTGATAGAGTGTTTATCCAATGGACTTGACCCTAAAAGTGA
TTTGTCACAGGTGGAACTGCTTGAGCTTTTTCTTAGTGTTATACCAATGG
TACCATCATTGAATACATATCCTTCTTTAACAATTCTACGCATTGTTGGT
TGTACGATTACAAAAATTGAAAATCTTCATATTGTACCTAATCTGAAGGA
ACTTTGGCTTTGTGAGGGAAAAATACAGGAATTTTTGATAATATTTAAAG
CAAACATGGAAGAAACAAGTGCTGTTGAAAAATCAGAGAGTAAAGCAAAT
CTTGGAGAAGATTACTGGCTGCAAGAATTGCTTGAACGTGAGCTTGATGA
GTTGTCAACTAAGCCGGAGTCAACAGTCAATAAAAAGCGTATCTTCTACA
AGATGAGAATTCGAACCATTCAACGGGAATGTATTGAGATGCGTGAACAG
CTTAAAGAACACCTTGAGAATCTACGTGAAGAATCTGTCACTAGTATTCA
TAAACTGTCAAATGCTACTAAAGAGGATATTACCAACATCTCATGCTTGA
GGAATCTCATAGCTTTGGATTTAAAAGATCCTATGTGTCATCCAAACCCT
GTGACACTACTATGCAATTATTCCACCTATGTTTTGTATCATATGCCATC
ATTAAAAAGATTGGATTCAGTTGATGTTTCAATGAAAATGCTGAAAGAGG
CTGCTGAGGTACATCACTAATTTGTTGTAATCTGTTAGAAGAAGTGAATC
TATCTGGCAATAGAATAAATTCTCTCAAGAATATGGAACAATTACGACAA
CTCAAATTTTTGAATTTGAGTGATAATCAGATACATAGTATTGAAACTGG
AAGGGCTTGAGAAGAACAGCAAACTGGAGAAGTTATATATGTACAAAAAT
GAGCTGAGTAAAATAGAAAATATATCCCATTTACTCACGTTGACAACATT
ATGGTTGAATAAAAACAAAATTGAAGTGATAGAGTGTTTATCCAATGGAC
TTGACCCTAAAAGTGATTTGTCACAGGTGGAACTGCTTGAGCTTTTTCTT
AGTGTTATACCAATGGTACCATCATTGAATACATATCCTTCTTTAACAAT
TCTACGCATTGTTGGTTGTACGATTACAAAAATTGAAAATCTTCATATTG
TACCTAATCTGAAGGAACTTTGGCTTTGTGAGGGAAAAATACAGGAATTT
TTGATAATATTTAAAGCAAACATGGAAGAAACAAGTGCTGTTGAAAAATC
AGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAATTGCTTG
AACGTGAGCTTGATGAGTTGTCAACTAAGCCGGAGTCAACAGTCAATAAA
AAGCGTATCTTCTACAAGATGAGAATTCGAACCATTCAACGGGAATGTAT
TGAGATGCGTGAACAGCTTAAAGAACACCTTGAGAATCTACGTGAAGAAT
CTGTCACTAGTATTCATAAACTGTCAAATGCTACTAAAGAGGATATTACC
AACATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATCCTAT
GTGTCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTATGTTT
TGTATCATATGCCATCATTAAAAAGATTGGATTCAGTTGATGTTTCAATG
AAAATGCTGAAAGAGGCTGCTGAGGTACATCACTAATTTGTTGTAATCTG
TTAGAAGAAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGAATAT
GGAACAATTACGACAACTCAAATTTTTGAATTTGAGTGATAATCAGATAC
ATAGTATTGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAAGTT
ATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCATTTAC
TCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGATAGAG
TGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGGAACT
GCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAATACAT
ATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACGATTACAAAAATT
GAAAATCTTCATATTGTACCTAATCTGAAGGAACTTTGGCTTTGTGAGGG
AAAAATACAGGAATTTTTGATAATATTTAAAGCAAACATGGAAGAAACAA
GTGCTGTTGAAAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGG
CTGCAAGAATTGCTTGAACGTGAGCTTGATGAGTTGTCAACTAAGCCGGA
GTCAACAGTCAATAAAAAGCGTATCTTCTACAAGATGAGAATTCGAACCA
TTCAACGGGAATGTATTGAGATGCGTGAACAGCTTAAAGAACACCTTGAG
AATCTACGTGAAGAATCTGTCACTAGTATTCATAAACTGTCAAATGCTAC
TAAAGAGGATATTACCAACATCTCATGCTTGAGGAATCTCATAGCTTTGG
ATTTAAAAGATCCTATGTGTCATCCAAACCCTGTGACACTACTATGCAAT
TATTCCACCTATGTTTTGTATCATATGCCATCATTAAAAAGATTGGATTC
AGTTGATGTTTCAATGAAAATGCTGAAAGAGGCTGCTGAGGTACATCACT
AATTTGTTGTAATCTGTTAGAAGAAGTGAATCTATCTGGCAATAGAATAA
ATTCTCTCAAGAATATGGAACAATTACGACAACTCAAATTTTTGAATTTG
AGTGATAATCAGATACATAGTATTGAAACTGGAAGGGCTTGAGAAGAACA
GCAAACTGGAGAAGTTATATATGTACAAAAATGAGCTGAGTAAAATAGAA
AATATATCCCATTTACTCACGTTGACAACATTATGGTTGAATAAAAACAA
AATTGAAGTGATAGAGTGTTTATCCAATGGACTTGACCCTAAAAGTGATT
TGTCACAGGTGGAACTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTA
CCATCATTGAATACATATCCTTCTTTAACAATTCTACGCATTGTTGGTTG
TACGATTACAAAAATTGAAAATCTTCATATTGTACCTAATCTGAAGGAAC
TTTGGCTTTGTGAGGGAAAAATACAGGAATTTTTGATAATATTTAAAGCA
AACATGGAAGAAACAAGTGCTGTTGAAAAATCAGAGAGTAAAGCAAATCT
TGGAGAAGATTACTGGCTGCAAGAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000102XLOC_000102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000174-exon-sc0000001-1575043694:711477..711578TCONS_00000174-exon-sc0000001-1575043694:711477..711578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:710956..711165TCONS_00000174-exon-sc0000001-1575043694:710956..711165Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:710379..710519TCONS_00000174-exon-sc0000001-1575043694:710379..710519Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:709494..709557TCONS_00000174-exon-sc0000001-1575043694:709494..709557Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:709200..709270TCONS_00000174-exon-sc0000001-1575043694:709200..709270Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:708675..708857TCONS_00000174-exon-sc0000001-1575043694:708675..708857Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:707423..707578TCONS_00000174-exon-sc0000001-1575043694:707423..707578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1575043694:705893..705932TCONS_00000174-exon-sc0000001-1575043694:705893..705932Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:711477..711578TCONS_00000174-exon-sc0000001-1510915933:711477..711578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:710956..711165TCONS_00000174-exon-sc0000001-1510915933:710956..711165Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:710379..710519TCONS_00000174-exon-sc0000001-1510915933:710379..710519Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:709494..709557TCONS_00000174-exon-sc0000001-1510915933:709494..709557Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:709200..709270TCONS_00000174-exon-sc0000001-1510915933:709200..709270Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:708675..708857TCONS_00000174-exon-sc0000001-1510915933:708675..708857Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:707423..707578TCONS_00000174-exon-sc0000001-1510915933:707423..707578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1510915933:705893..705932TCONS_00000174-exon-sc0000001-1510915933:705893..705932Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:711477..711578TCONS_00000174-exon-sc0000001-1491911889:711477..711578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:710956..711165TCONS_00000174-exon-sc0000001-1491911889:710956..711165Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:710379..710519TCONS_00000174-exon-sc0000001-1491911889:710379..710519Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:709494..709557TCONS_00000174-exon-sc0000001-1491911889:709494..709557Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:709200..709270TCONS_00000174-exon-sc0000001-1491911889:709200..709270Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:708675..708857TCONS_00000174-exon-sc0000001-1491911889:708675..708857Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:707423..707578TCONS_00000174-exon-sc0000001-1491911889:707423..707578Clytia hemisphaericaexon
TCONS_00000174-exon-sc0000001-1491911889:705893..705932TCONS_00000174-exon-sc0000001-1491911889:705893..705932Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000174-proteinTCONS_00000174-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:705893..711578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.28438 8.12422 4.34554 3.73296 13.0024 9.42675 16.6683 16.6187 9.82085 11.2853 8.29835 9.60081 2.30348 2.23055 1.9667 3.16586 2.70546 3.13314 2.18918 1.87431 3.98228 3.24472 3.81022 5.26924 15.7288 15.7867 2.75966 2.8082 3.22085 3.54618
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00000174 vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.581e-59
Identity = 139/300 (46.33%), Postives = 188/300 (62.67%), Query Frame = 1
Query:   70 NLGEDYWLQELCLSNGLDPK---SDLSQVELLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCEGKIQKLEGLEKNSKLEKLYMYKNELSKIENISHXXXXXXXXXNKNKIEVIENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITNISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMKMLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEH---LENLREESVTSIHKLSNATKELERELDEL 951
            NL ++  ++ELCL NGL  +    + S    LE+F    P +  L+ +P+LT L IV   I +I  L     LKELW+ E  I+K+EGL++   LEKLY+Y N++SKIEN+  L+ L  LWLN N I+ IE ++ L+ LK LNL+ N I+SIG  L     LE +NLSGN+I S K++TN++ L  L  L L DP    NPV LLCNYST+VLYH+P L+R D++DVS K +KE A++T  KK ++Y MRI+T+QR   E  E+L +    L+ L EE V      S   K LEREL EL
Sbjct:    6 NLNQEEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFLGYPRIVGLSLFPNLTSLTIVAQDIKEISGLEPCLQLKELWIAECCIEKIEGLQECRNLEKLYLYFNKISKIENLEKLIKLKVLWLNHNTIKNIEGLQTLKNLKDLNLAGNLINSIGRCLDSNEQLERLNLSGNQICSFKELTNLTRLPCLKDLCLNDPQYTTNPVCLLCNYSTHVLYHLPCLQRFDTLDVSAKQIKELADTTAMKKIMYYNMRIKTLQRHLKEDLEKLNDQKCKLQKLPEERVKL---FSFVKKTLERELAEL 302          
The following BLAST results are available for this feature:
BLAST of TCONS_00000174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC91.581e-5946.33Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
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