TCONS_00000174-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000174-protein
Unique NameTCONS_00000174-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000174-protein ID=TCONS_00000174-protein|Name=TCONS_00000174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
EFLIIFKANMEETSAVEKSESKANLGEDYWLQELCLSNGLDPKSDLSQVE
LLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCE
GKIQKLEGLEKNSKLEKLYMYKNELSKIENISHLLTLTTLWLNKNKIEVI
ENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITN
ISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMK
MLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEHLENLREESVTSI
HKLSNATKELERELDELSTKPE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000102XLOC_000102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000174TCONS_00000174Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 271..295
NoneNo IPR availableCOILSCoilCoilcoord: 300..320
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 112..133
e-value: 0.0014
score: 27.9
coord: 134..155
e-value: 0.0083
score: 25.3
coord: 90..111
e-value: 35.0
score: 11.1
NoneNo IPR availablePFAMPF14580LRR_9coord: 125..259
e-value: 7.2E-11
score: 41.8
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 69..248
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 141..246
e-value: 3.9E-16
score: 58.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 11..140
e-value: 2.3E-12
score: 45.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 114..135
score: 8.02
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 92..113
score: 6.757
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 136..157
score: 8.051
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 70..91
score: 5.548
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 181..202
score: 7.165
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 158..179
score: 7.92

Blast
[Close]
BLAST of TCONS_00000174-protein vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.905e-65
Identity = 139/300 (46.33%), Postives = 188/300 (62.67%), Query Frame = 0 
Query:   24 NLGEDYWLQELCLSNGLDPK---SDLSQVELLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCEGKIQKLEGLEKNSKLEKLYMYKNELSKIENISHLLTLTTLWLNKNKIEVIENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITNISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMKMLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEH---LENLREESVTSIHKLSNATKELERELDEL 317
            NL ++  ++ELCL NGL  +    + S    LE+F    P +  L+ +P+LT L IV   I +I  L     LKELW+ E  I+K+EGL++   LEKLY+Y N++SKIEN+  L+ L  LWLN N I+ IE ++ L+ LK LNL+ N I+SIG  L     LE +NLSGN+I S K++TN++ L  L  L L DP    NPV LLCNYST+VLYH+P L+R D++DVS K +KE A++T  KK ++Y MRI+T+QR   E  E+L +    L+ L EE V      S   K LEREL EL
Sbjct:    6 NLNQEEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFLGYPRIVGLSLFPNLTSLTIVAQDIKEISGLEPCLQLKELWIAECCIEKIEGLQECRNLEKLYLYFNKISKIENLEKLIKLKVLWLNHNTIKNIEGLQTLKNLKDLNLAGNLINSIGRCLDSNEQLERLNLSGNQICSFKELTNLTRLPCLKDLCLNDPQYTTNPVCLLCNYSTHVLYHLPCLQRFDTLDVSAKQIKELADTTAMKKIMYYNMRIKTLQRHLKEDLEKLNDQKCKLQKLPEERVKL---FSFVKKTLERELAEL 302
The following BLAST results are available for this feature:
BLAST of TCONS_00000174-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC91.905e-6546.33Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
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