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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000159 ID=TCONS_00000159|Name=TCONS_00000159|organism=Clytia hemisphaerica|type=transcript|length=1044bp
taacAAAATAACAATGGCATTTGATGTTTATGTCTCATACGCTGAAGAAG
ACTCTCAATGGATTCATGAAAATTTGGTTGAGGAACTTGAAGAGAGCAGT
AATTTGTCAGTTTGTTTACGATCAAGAGATTTTGATTCTGACCTATCACT
GATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTCATCCTGTGTGTTAG
TTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAATGGAGCTATTTCACT
AAGTTAATAAAGAGCAAAGAGGATAAATCGATTACTGGACTGCTGGATAA
TAAAGAAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGG
AACTAGAAACtgaggaaaatgaaaatcaaaaagaagaggaagaagaagaa
gaacaagaaaaaacaacaaacgtTTCTGACTACATACTTTTCGACAATGT
GTACCCACATTTagtttcaagttcattttgtgCTGAAGATGAAGATCTAA
CTCGAGatgatttagaggatttaacTTTGAAAATGGAGGATGTTAAAACT
ATGATGTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGAT
TGGTTTTCAACAACCAGGAATAACTGGAAAAAATaagcattttgaaaaat
ttgaatctcaAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATG
ATGGAAAAGTTTCAATCCAGATATGATTTATTTGctgttcaaaatcaaaa
caataacaatgtCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATAC
TGAAAAATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAAT
TCAGCATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAA
TCAAGATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATA
GTCAAAGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGG
AAAGATCTAATGAAGTTCACACCAAAGTATAAATATTAGAAATT Run BLAST on NCBI protein sequence of TCONS_00000159-protein >TCONS_00000159-protein ID=TCONS_00000159-protein|Name=TCONS_00000159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
NKITMAFDVYVSYAEEDSQWIHENLVEELEESSNLSVCLRSRDFDSDLSL
IENRKLFVEKCSSCVLVFSKNYCKKASEWSYFTKLIKSKEDKSITGLLDN
KEDAEVLENLNVKSNEELETEENENQKEEEEEEEQEKTTNVSDYILFDNV
YPHLVSSSFCAEDEDLTRDDLEDLTLKMEDVKTMMLLQENNTPPADEQKI
GFQQPGITGKNKHFEKFESQKEQMEVLDALQTMMEKFQSRYDLFAVQNQN
NNNVMLILRKKRYRRILKNFEDCILQAVNGKKNSALIHSLPFVMDMLEGN
QDIHGFQCCCCGNLFHSQRALDIHLDFCVKQHWKDLMKFTPKYKY Run BLAST on NCBI transcript from alignment at sc0000001:447919..449196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000159 ID=TCONS_00000159|Name=TCONS_00000159|organism=Clytia hemisphaerica|type=transcript|length=1278bp|location=Sequence derived from alignment at sc0000001:447919..449196- (Clytia hemisphaerica)
TAACAAAATAACAATGGCATTTGATGTTTATGTCTCATACGCTGAAGAAG
ACTCTCAATGGATTCATGAAAATTTGGTTGAGGAACTTGAAGAGAGCAGT
AATTTGTCAGTTTGTTTACGATCAAGAGATTTTGATTCTGACCTATCACT
GATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTCATCCTGTGTGTTAG
TTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAATGGAGCTATTTCACT
AAGTTAATAAAGAGCAAAGAGGATAAATCGATTACTGGACTGCTGGATAA
TAAAGGTATTTTGTGTATTTATTTGTCGGAATGTAATGTTCCAGAGCTGT
TTAGCAAACAAAAGATGCTAGATTGGACAGCAGAAGATTTGAGAGATTTA
TTCTGGCAAAGATTGATCAAATTTTTAAAAACTGCTAAAAAGAAATCCGA
TATTAAAAAAGCATTATCAGGGAAATTGAAAGACTGTTCAAATACTAATC
TAAAAAGTGCTCCTAAGATGAATTTATCAAATACCTTAGAAGATGCAGAA
GTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAACTAGAAACTGAGGA
AAATGAAAATCAAAAAGAAGAGGAAGAAGAAGAAGAACAAGAAAAAACAA
CAAACGTTTCTGACTACATACTTTTCGACAATGTGTACCCACATTTAGTT
TCAAGTTCATTTTGTGCTGAAGATGAAGATCTAACTCGAGATGATTTAGA
GGATTTAACTTTGAAAATGGAGGATGTTAAAACTATGATGTTGTTACAGG
AAAATAATACACCTCCTGCTGACGAGCAGAAGATTGGTTTTCAACAACCA
GGAATAACTGGAAAAAATAAGCATTTTGAAAAATTTGAATCTCAAAAAGA
ACAGATGGAGGTTCTAGATGCGTTGCAGACGATGATGGAAAAGTTTCAAT
CCAGATATGATTTATTTGCTGTTCAAAATCAAAACAATAACAATGTCATG
TTAATTCTACGTAAAAAGCGGTATAGACGAATACTGAAAAATTTTGAGGA
TTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTCAGCATTGATTCATA
GTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATCAAGATATACATGGT
TTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGTCAAAGAGCGTTGGA
TATACATTTGGATTTTTGTGTTAAACAACACTGGAAAGATCTAATGAAGT
TCACACCAAAGTATAAATATTAGAAATT Coding sequence (CDS) from alignment at sc0000001:447919..449196- >TCONS_00000159 ID=TCONS_00000159|Name=TCONS_00000159|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000001:447919..449196- (Clytia hemisphaerica)
AAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAACTA
GAAACTGAGGAAAATGAAAATCAAAAAGAAGAGGAAGAAGAAGAAGAACA
AGAAAAAACAACAAACGTTTCTGACTACATACTTTTCGACAATGTGTACC
CACATTTAGTTTCAAGTTCATTTTGTGCTGAAGATGAAGATCTAACTCGA
GATGATTTAGAGGATTTAACTTTGAAAATGGAGGATGTTAAAACTATGAT
GTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGATTGGTT
TTCAACAACCAGGAATAACTGGAAAAAATAAGCATTTTGAAAAATTTGAA
TCTCAAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATGATGGA
AAAGTTTCAATCCAGATATGATTTATTTGCTGTTCAAAATCAAAACAATA
ACAATGTCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATACTGAAA
AATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTCAGC
ATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATCAAG
ATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGTCAA
AGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGGAAAGA
TCTAATGAAGTTCACACCAAAGTATAAATATTAGAACAAAATAACAATGG
CATTTGATGTTTATGTCTCATACGCTGAAGAAGACTCTCAATGGATTCAT
GAAAATTTGGTTGAGGAACTTGAAGAGAGCAGTAATTTGTCAGTTTGTTT
ACGATCAAGAGATTTTGATTCTGACCTATCACTGATTGAAAACCGCAAAT
TGTTTGTAGAAAAGTGTTCATCCTGTGTGTTAGTTTTCTCAAAAAACTAT
TGCAAAAAAGCATCTGAATGGAGCTATTTCACTAAGTTAATAAAGAGCAA
AGAGGATAAATCGATTACTGGACTGCTGGATAATAAAGAAGATGCAGAAG
TACTTGAGAATTTGAATGTAAAGTCAAATGAGGAACTAGAAACTGAGGAA
AATGAAAATCAAAAAGAAGAGGAAGAAGAAGAAGAACAAGAAAAAACAAC
AAACGTTTCTGACTACATACTTTTCGACAATGTGTACCCACATTTAGTTT
CAAGTTCATTTTGTGCTGAAGATGAAGATCTAACTCGAGATGATTTAGAG
GATTTAACTTTGAAAATGGAGGATGTTAAAACTATGATGTTGTTACAGGA
AAATAATACACCTCCTGCTGACGAGCAGAAGATTGGTTTTCAACAACCAG
GAATAACTGGAAAAAATAAGCATTTTGAAAAATTTGAATCTCAAAAAGAA
CAGATGGAGGTTCTAGATGCGTTGCAGACGATGATGGAAAAGTTTCAATC
CAGATATGATTTATTTGCTGTTCAAAATCAAAACAATAACAATGTCATGT
TAATTCTACGTAAAAAGCGGTATAGACGAATACTGAAAAATTTTGAGGAT
TGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTCAGCATTGATTCATAG
TTTGCCTTTTGTTATGGATATGTTAGAGGGTAATCAAGATATACATGGTT
TCCAATGCTGTTGTTGTGGCAATTTATTTCATAGTCAAAGAGCGTTGGAT
ATACATTTGGATTTTTGTGTTAAACAACACTGGAAAGATCTAATGAAGTT
CACACCAAAGTATAAATATTAGAACAAAATAACAATGGCATTTGATGTTT
ATGTCTCATACGCTGAAGAAGACTCTCAATGGATTCATGAAAATTTGGTT
GAGGAACTTGAAGAGAGCAGTAATTTGTCAGTTTGTTTACGATCAAGAGA
TTTTGATTCTGACCTATCACTGATTGAAAACCGCAAATTGTTTGTAGAAA
AGTGTTCATCCTGTGTGTTAGTTTTCTCAAAAAACTATTGCAAAAAAGCA
TCTGAATGGAGCTATTTCACTAAGTTAATAAAGAGCAAAGAGGATAAATC
GATTACTGGACTGCTGGATAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000159-exon-sc0000001-1575043694:448892..449196 | TCONS_00000159-exon-sc0000001-1575043694:448892..449196 | Clytia hemisphaerica | exon |
| TCONS_00000159-exon-sc0000001-1575043694:447919..448657 | TCONS_00000159-exon-sc0000001-1575043694:447919..448657 | Clytia hemisphaerica | exon |
| TCONS_00000159-exon-sc0000001-1510915933:448892..449196 | TCONS_00000159-exon-sc0000001-1510915933:448892..449196 | Clytia hemisphaerica | exon |
| TCONS_00000159-exon-sc0000001-1510915933:447919..448657 | TCONS_00000159-exon-sc0000001-1510915933:447919..448657 | Clytia hemisphaerica | exon |
| TCONS_00000159-exon-sc0000001-1491911889:448892..449196 | TCONS_00000159-exon-sc0000001-1491911889:448892..449196 | Clytia hemisphaerica | exon |
| TCONS_00000159-exon-sc0000001-1491911889:447919..448657 | TCONS_00000159-exon-sc0000001-1491911889:447919..448657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:447919..449196 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000157 | TIR_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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