TCONS_00000158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000158
Unique NameTCONS_00000158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000158 ID=TCONS_00000158|Name=TCONS_00000158|organism=Clytia hemisphaerica|type=transcript|length=3572bp
GAGACTTTTTAGCCAAATTTCTTTACATGCTCTTAAATTTATAGCAATAT
TACAATATCACAACTCACAACTTGAGATTATATGAATTGCACCAAAGATC
TCACTTTTGATTAGGAATCTTAAATTAAATTCCAGTTATTTTATGCAGtc
gttttttaagaaattaacAAAATAACAATGGCATTTGATGTTTATGTCTC
ATACGCTGAAGAAGACTCTCAATGGATTCATGAAAATTTGGTTGAGGAAC
TTGAAGAGAGCAGTAATTTGTCAGTTTGTTTACGATCAAGAGATTTTGAT
TCTGACCTATCACTGATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTC
ATCCTGTGTGTTAGTTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAAT
GGAGCTATTTCACTAAGTTAATAAAGAGCAAAGAGGATAAATCGATTACT
GGACTGCTGGATAATAAAGGTATTTTGTGTATTTATTTGTCGGAATGTAA
TGTTCCAGAGCTGTTTAGCAAACAAAAGATGCTAGATTGGACAGCAGAAG
ATTTGAGAGATTTATTCTGGCAAAGAttgatcaaatttttaaaaactgct
AAAAAGAAATCCGATATTAAAAAAGCATTATCAGGGAAATTGAAAGACTG
TTCAAATACTAATCTAAAAAGTGCTCCTAAGATGAATTTATCAAATACCT
TAGAAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAA
CTAGAAACtgaggaaaatgaaaatcaaaaagaagaggaagaagaagaaga
acaagaaaaaacaacaaacgtTTCTGACTACATACTTTTCGACAATGTGT
ACCCACATTTagtttcaagttcattttgtgCTGAAGATGAAGATCTAACT
CGAGatgatttagaggatttaacTTTGAAAATGGAGGATGTTAAAACTAT
GATGTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGATTG
GTTTTCAACAACCAGGAATAACTGGAAAAAATaagcattttgaaaaattt
gaatctcaAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATGAT
GGAAAAGTTTCAATCCAGATATGATTTATTTGctgttcaaaatcaaaaca
ataacaatgtCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATACTG
AAAAATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTC
AGCATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATC
AAGATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGT
CAAAGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGGAA
AGATCTAATGAAGTTCACACCAAAGTATAAATATTAGAAATTATGAGATA
AAACCTTTATCTATATTAGAAGGAGGATTCTTCTTATCAGCTTCATAAGT
TTTACTACACAGTACATACTAGTACACgtcattttcattcaaattttgat
tcaaTTGCATTCAAATTTCTGATGTTTTTGCAAGTAGGATGCTAGCTTTT
GTAGGATATTGTTTTTACTCAAAGAAGGCAAATGCATATTTCCTGCAACT
CTAAAGTAGGAAACAGTAAGGACAGTTTCATAAAATCATATACTTGCAAT
CATTATCAAAACAAGAGTGCAGAATAACGAACACCCATTTTATAAATTGG
AATATTCATAAACGGACTGAGGGtcgtttttattttcaatggCTGATACG
TAGTAATTATccactaaagtctattcacgataagtgtgcactcttttttc
ttttacctataacttttgaaggaattcttcaatctttataaatttggtat
cattggaaagatattagtgagtggaacaatttgaaataaaaaaatcttta
aaaaattctaaaagtgaagataaaaatgaagaagaaaaaaaagaagatct
tgtagagaaagtgctataacttttattttcactggagagattctttgatc
ttaggagatcatcactgtgaagaaatttcattaaaatatttattaaatat
aaagtcatgatacaaagttaataagtgattgaccccaaaaaacagcaaga
aactgcagaaaacagcgtttttagacgtcaataagcttataactttgttt
gatatcttttgactgaatgattatttttgagaattctttttacagtgacg
ttcgatgatcaaggattcacctcagtgaaaatgatagttatagcactttt
ctacaagatcttcatttttttcttcttcattttcatcttcatttttagaa
tttttttaaagatttttttattttaaattgttccactcactaatatcttt
ccaatgataccaaatttataaagattaaagaattccttcaaaagttatag
gtaaaagaaaaaagagtgcacacttatcgtgaatagatcCGACGTTTTCT
TAAGATCCAGCAGGATTCAGTAGAATAAAGACATATCTAAGAACCTAGTA
ATAAAACCTATGTATTATTAAGGTTATCCatatatacatgttttttataa
gcattgcacttataagcatatctagccTCAGATATGGCAAAATTTTCAGC
ATATGATAAGCATTACCTTGAGCCACGAAAAAgtatttttccgattttga
ctgTTTTTGGCTGGGATTTAAGGGATTCTTGGAATTTCCCTAACATTTTG
CTTGGGGtataagcatctctgagcctgttctcgaatttttgtatgcttat
aaaaaaacatgcagTACATACGCAGTGATTGAGGGTAAAGGGTAGAAAAG
GGTAGGTATTGTTTGAAAGGAGTCATTTGTATTGTTCTCTTTGAACAATA
AGGGGAGGGTGTCAAATAATTTACTGATATTTGCAAAGTATTTGCTTATG
TACTATATGGTTGACTCCGATGGTACTTGACACCTTATCAGTAGAGCACT
TTAAAGGTGTCATGTCCATAATTGTtattaaagaatattttaactcatat
attttcttattaaaGGACCAGTTCATTCACTCACTCACTAAATTGCCTTT
TAGAGAATTAATTAATAGCATGACACATTGATTTGCTTGTACTTAAACta
tttgaaacttttaaattgtcttgttttatgtttttttaaagGTTATTTTT
AGGGATAATGCTGAATAATGATTGacatatttttgataatttaaaaatta
ttagATTAGATTATACTAAaggtttatttttgaaaatgataaaaatatta
gtaGTAATTGTACAGTATATTTTTTAATGCACATTTTCACTTTAAACTTT
CACTTTATATAATGAGATAACGACAATGACTACAGATTGATGCGATAATG
ACATATtaattgaaagttttaattccctttttattgcattttattgtttt
cttttatgAACATTGTGGATTTTTTGGCAATAGGCCATTTTacggtcgaa
atgaatcatgggtaattaGAACTAACTGCGCCCCCTTAATGGCTCTCCAT
TGGTCCAAAATGCTTGACTGac
Run BLAST on NCBI

transcript from alignment at sc0000001:445789..449360-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000158 ID=TCONS_00000158|Name=TCONS_00000158|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at sc0000001:445789..449360- (Clytia hemisphaerica)
GAGACTTTTTAGCCAAATTTCTTTACATGCTCTTAAATTTATAGCAATAT TACAATATCACAACTCACAACTTGAGATTATATGAATTGCACCAAAGATC TCACTTTTGATTAGGAATCTTAAATTAAATTCCAGTTATTTTATGCAGTC GTTTTTTAAGAAATTAACAAAATAACAATGGCATTTGATGTTTATGTCTC ATACGCTGAAGAAGACTCTCAATGGATTCATGAAAATTTGGTTGAGGAAC TTGAAGAGAGCAGTAATTTGTCAGTTTGTTTACGATCAAGAGATTTTGAT TCTGACCTATCACTGATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTC ATCCTGTGTGTTAGTTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAAT GGAGCTATTTCACTAAGTTAATAAAGAGCAAAGAGGATAAATCGATTACT GGACTGCTGGATAATAAAGGTATTTTGTGTATTTATTTGTCGGAATGTAA TGTTCCAGAGCTGTTTAGCAAACAAAAGATGCTAGATTGGACAGCAGAAG ATTTGAGAGATTTATTCTGGCAAAGATTGATCAAATTTTTAAAAACTGCT AAAAAGAAATCCGATATTAAAAAAGCATTATCAGGGAAATTGAAAGACTG TTCAAATACTAATCTAAAAAGTGCTCCTAAGATGAATTTATCAAATACCT TAGAAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAA CTAGAAACTGAGGAAAATGAAAATCAAAAAGAAGAGGAAGAAGAAGAAGA ACAAGAAAAAACAACAAACGTTTCTGACTACATACTTTTCGACAATGTGT ACCCACATTTAGTTTCAAGTTCATTTTGTGCTGAAGATGAAGATCTAACT CGAGATGATTTAGAGGATTTAACTTTGAAAATGGAGGATGTTAAAACTAT GATGTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGATTG GTTTTCAACAACCAGGAATAACTGGAAAAAATAAGCATTTTGAAAAATTT GAATCTCAAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATGAT GGAAAAGTTTCAATCCAGATATGATTTATTTGCTGTTCAAAATCAAAACA ATAACAATGTCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATACTG AAAAATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTC AGCATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATC AAGATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGT CAAAGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGGAA AGATCTAATGAAGTTCACACCAAAGTATAAATATTAGAAATTATGAGATA AAACCTTTATCTATATTAGAAGGAGGATTCTTCTTATCAGCTTCATAAGT TTTACTACACAGTACATACTAGTACACGTCATTTTCATTCAAATTTTGAT TCAATTGCATTCAAATTTCTGATGTTTTTGCAAGTAGGATGCTAGCTTTT GTAGGATATTGTTTTTACTCAAAGAAGGCAAATGCATATTTCCTGCAACT CTAAAGTAGGAAACAGTAAGGACAGTTTCATAAAATCATATACTTGCAAT CATTATCAAAACAAGAGTGCAGAATAACGAACACCCATTTTATAAATTGG AATATTCATAAACGGACTGAGGGTCGTTTTTATTTTCAATGGCTGATACG TAGTAATTATCCACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTC TTTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTAT CATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAAAAAATCTTTA AAAAATTCTAAAAGTGAAGATAAAAATGAAGAAGAAAAAAAAGAAGATCT TGTAGAGAAAGTGCTATAACTTTTATTTTCACTGGAGAGATTCTTTGATC TTAGGAGATCATCACTGTGAAGAAATTTCATTAAAATATTTATTAAATAT AAAGTCATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAAGA AACTGCAGAAAACAGCGTTTTTAGACGTCAATAAGCTTATAACTTTGTTT GATATCTTTTGACTGAATGATTATTTTTGAGAATTCTTTTTACAGTGACG TTCGATGATCAAGGATTCACCTCAGTGAAAATGATAGTTATAGCACTTTT CTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAA TTTTTTTAAAGATTTTTTTATTTTAAATTGTTCCACTCACTAATATCTTT CCAATGATACCAAATTTATAAAGATTAAAGAATTCCTTCAAAAGTTATAG GTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGATCCGACGTTTTCT TAAGATCCAGCAGGATTCAGTAGAATAAAGACATATCTAAGAACCTAGTA ATAAAACCTATGTATTATTAAGGTTATCCATATATACATGTTTTTTATAA GCATTGCACTTATAAGCATATCTAGCCTCAGATATGGCAAAATTTTCAGC ATATGATAAGCATTACCTTGAGCCACGAAAAAGTATTTTTCCGATTTTGA CTGTTTTTGGCTGGGATTTAAGGGATTCTTGGAATTTCCCTAACATTTTG CTTGGGGTATAAGCATCTCTGAGCCTGTTCTCGAATTTTTGTATGCTTAT AAAAAAACATGCAGTACATACGCAGTGATTGAGGGTAAAGGGTAGAAAAG GGTAGGTATTGTTTGAAAGGAGTCATTTGTATTGTTCTCTTTGAACAATA AGGGGAGGGTGTCAAATAATTTACTGATATTTGCAAAGTATTTGCTTATG TACTATATGGTTGACTCCGATGGTACTTGACACCTTATCAGTAGAGCACT TTAAAGGTGTCATGTCCATAATTGTTATTAAAGAATATTTTAACTCATAT ATTTTCTTATTAAAGGACCAGTTCATTCACTCACTCACTAAATTGCCTTT TAGAGAATTAATTAATAGCATGACACATTGATTTGCTTGTACTTAAACTA TTTGAAACTTTTAAATTGTCTTGTTTTATGTTTTTTTAAAGGTTATTTTT AGGGATAATGCTGAATAATGATTGACATATTTTTGATAATTTAAAAATTA TTAGATTAGATTATACTAAAGGTTTATTTTTGAAAATGATAAAAATATTA GTAGTAATTGTACAGTATATTTTTTAATGCACATTTTCACTTTAAACTTT CACTTTATATAATGAGATAACGACAATGACTACAGATTGATGCGATAATG ACATATTAATTGAAAGTTTTAATTCCCTTTTTATTGCATTTTATTGTTTT CTTTTATGAACATTGTGGATTTTTTGGCAATAGGCCATTTTACGGTCGAA ATGAATCATGGGTAATTAGAACTAACTGCGCCCCCTTAATGGCTCTCCAT TGGTCCAAAATGCTTGACTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000092XLOC_000092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000158-exon-sc0000001-1575043694:445789..449360TCONS_00000158-exon-sc0000001-1575043694:445789..449360Clytia hemisphaericaexon
TCONS_00000158-exon-sc0000001-1510915933:445789..449360TCONS_00000158-exon-sc0000001-1510915933:445789..449360Clytia hemisphaericaexon
TCONS_00000158-exon-sc0000001-1491911889:445789..449360TCONS_00000158-exon-sc0000001-1491911889:445789..449360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:445789..449360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94411 1.62279 0.762817 0.490054 6.38834 3.58113 5.2381 5.16424 3.07456 2.95471 2.53715 1.7397 1.97593 2.16378 1.53632 1.59818 1.61031 1.51767 2.45657 1.93353 2.66823 2.28336 5.12825 5.53921 1.56283 2.41301 4.01617 2.66708 5.16851 5.26576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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