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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000158 ID=TCONS_00000158|Name=TCONS_00000158|organism=Clytia hemisphaerica|type=transcript|length=3572bp
GAGACTTTTTAGCCAAATTTCTTTACATGCTCTTAAATTTATAGCAATAT
TACAATATCACAACTCACAACTTGAGATTATATGAATTGCACCAAAGATC
TCACTTTTGATTAGGAATCTTAAATTAAATTCCAGTTATTTTATGCAGtc
gttttttaagaaattaacAAAATAACAATGGCATTTGATGTTTATGTCTC
ATACGCTGAAGAAGACTCTCAATGGATTCATGAAAATTTGGTTGAGGAAC
TTGAAGAGAGCAGTAATTTGTCAGTTTGTTTACGATCAAGAGATTTTGAT
TCTGACCTATCACTGATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTC
ATCCTGTGTGTTAGTTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAAT
GGAGCTATTTCACTAAGTTAATAAAGAGCAAAGAGGATAAATCGATTACT
GGACTGCTGGATAATAAAGGTATTTTGTGTATTTATTTGTCGGAATGTAA
TGTTCCAGAGCTGTTTAGCAAACAAAAGATGCTAGATTGGACAGCAGAAG
ATTTGAGAGATTTATTCTGGCAAAGAttgatcaaatttttaaaaactgct
AAAAAGAAATCCGATATTAAAAAAGCATTATCAGGGAAATTGAAAGACTG
TTCAAATACTAATCTAAAAAGTGCTCCTAAGATGAATTTATCAAATACCT
TAGAAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAA
CTAGAAACtgaggaaaatgaaaatcaaaaagaagaggaagaagaagaaga
acaagaaaaaacaacaaacgtTTCTGACTACATACTTTTCGACAATGTGT
ACCCACATTTagtttcaagttcattttgtgCTGAAGATGAAGATCTAACT
CGAGatgatttagaggatttaacTTTGAAAATGGAGGATGTTAAAACTAT
GATGTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGATTG
GTTTTCAACAACCAGGAATAACTGGAAAAAATaagcattttgaaaaattt
gaatctcaAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATGAT
GGAAAAGTTTCAATCCAGATATGATTTATTTGctgttcaaaatcaaaaca
ataacaatgtCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATACTG
AAAAATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTC
AGCATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATC
AAGATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGT
CAAAGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGGAA
AGATCTAATGAAGTTCACACCAAAGTATAAATATTAGAAATTATGAGATA
AAACCTTTATCTATATTAGAAGGAGGATTCTTCTTATCAGCTTCATAAGT
TTTACTACACAGTACATACTAGTACACgtcattttcattcaaattttgat
tcaaTTGCATTCAAATTTCTGATGTTTTTGCAAGTAGGATGCTAGCTTTT
GTAGGATATTGTTTTTACTCAAAGAAGGCAAATGCATATTTCCTGCAACT
CTAAAGTAGGAAACAGTAAGGACAGTTTCATAAAATCATATACTTGCAAT
CATTATCAAAACAAGAGTGCAGAATAACGAACACCCATTTTATAAATTGG
AATATTCATAAACGGACTGAGGGtcgtttttattttcaatggCTGATACG
TAGTAATTATccactaaagtctattcacgataagtgtgcactcttttttc
ttttacctataacttttgaaggaattcttcaatctttataaatttggtat
cattggaaagatattagtgagtggaacaatttgaaataaaaaaatcttta
aaaaattctaaaagtgaagataaaaatgaagaagaaaaaaaagaagatct
tgtagagaaagtgctataacttttattttcactggagagattctttgatc
ttaggagatcatcactgtgaagaaatttcattaaaatatttattaaatat
aaagtcatgatacaaagttaataagtgattgaccccaaaaaacagcaaga
aactgcagaaaacagcgtttttagacgtcaataagcttataactttgttt
gatatcttttgactgaatgattatttttgagaattctttttacagtgacg
ttcgatgatcaaggattcacctcagtgaaaatgatagttatagcactttt
ctacaagatcttcatttttttcttcttcattttcatcttcatttttagaa
tttttttaaagatttttttattttaaattgttccactcactaatatcttt
ccaatgataccaaatttataaagattaaagaattccttcaaaagttatag
gtaaaagaaaaaagagtgcacacttatcgtgaatagatcCGACGTTTTCT
TAAGATCCAGCAGGATTCAGTAGAATAAAGACATATCTAAGAACCTAGTA
ATAAAACCTATGTATTATTAAGGTTATCCatatatacatgttttttataa
gcattgcacttataagcatatctagccTCAGATATGGCAAAATTTTCAGC
ATATGATAAGCATTACCTTGAGCCACGAAAAAgtatttttccgattttga
ctgTTTTTGGCTGGGATTTAAGGGATTCTTGGAATTTCCCTAACATTTTG
CTTGGGGtataagcatctctgagcctgttctcgaatttttgtatgcttat
aaaaaaacatgcagTACATACGCAGTGATTGAGGGTAAAGGGTAGAAAAG
GGTAGGTATTGTTTGAAAGGAGTCATTTGTATTGTTCTCTTTGAACAATA
AGGGGAGGGTGTCAAATAATTTACTGATATTTGCAAAGTATTTGCTTATG
TACTATATGGTTGACTCCGATGGTACTTGACACCTTATCAGTAGAGCACT
TTAAAGGTGTCATGTCCATAATTGTtattaaagaatattttaactcatat
attttcttattaaaGGACCAGTTCATTCACTCACTCACTAAATTGCCTTT
TAGAGAATTAATTAATAGCATGACACATTGATTTGCTTGTACTTAAACta
tttgaaacttttaaattgtcttgttttatgtttttttaaagGTTATTTTT
AGGGATAATGCTGAATAATGATTGacatatttttgataatttaaaaatta
ttagATTAGATTATACTAAaggtttatttttgaaaatgataaaaatatta
gtaGTAATTGTACAGTATATTTTTTAATGCACATTTTCACTTTAAACTTT
CACTTTATATAATGAGATAACGACAATGACTACAGATTGATGCGATAATG
ACATATtaattgaaagttttaattccctttttattgcattttattgtttt
cttttatgAACATTGTGGATTTTTTGGCAATAGGCCATTTTacggtcgaa
atgaatcatgggtaattaGAACTAACTGCGCCCCCTTAATGGCTCTCCAT
TGGTCCAAAATGCTTGACTGac Run BLAST on NCBI transcript from alignment at sc0000001:445789..449360- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000158 ID=TCONS_00000158|Name=TCONS_00000158|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at sc0000001:445789..449360- (Clytia hemisphaerica)
GAGACTTTTTAGCCAAATTTCTTTACATGCTCTTAAATTTATAGCAATAT
TACAATATCACAACTCACAACTTGAGATTATATGAATTGCACCAAAGATC
TCACTTTTGATTAGGAATCTTAAATTAAATTCCAGTTATTTTATGCAGTC
GTTTTTTAAGAAATTAACAAAATAACAATGGCATTTGATGTTTATGTCTC
ATACGCTGAAGAAGACTCTCAATGGATTCATGAAAATTTGGTTGAGGAAC
TTGAAGAGAGCAGTAATTTGTCAGTTTGTTTACGATCAAGAGATTTTGAT
TCTGACCTATCACTGATTGAAAACCGCAAATTGTTTGTAGAAAAGTGTTC
ATCCTGTGTGTTAGTTTTCTCAAAAAACTATTGCAAAAAAGCATCTGAAT
GGAGCTATTTCACTAAGTTAATAAAGAGCAAAGAGGATAAATCGATTACT
GGACTGCTGGATAATAAAGGTATTTTGTGTATTTATTTGTCGGAATGTAA
TGTTCCAGAGCTGTTTAGCAAACAAAAGATGCTAGATTGGACAGCAGAAG
ATTTGAGAGATTTATTCTGGCAAAGATTGATCAAATTTTTAAAAACTGCT
AAAAAGAAATCCGATATTAAAAAAGCATTATCAGGGAAATTGAAAGACTG
TTCAAATACTAATCTAAAAAGTGCTCCTAAGATGAATTTATCAAATACCT
TAGAAGATGCAGAAGTACTTGAGAATTTGAATGTAAAGTCAAATGAGGAA
CTAGAAACTGAGGAAAATGAAAATCAAAAAGAAGAGGAAGAAGAAGAAGA
ACAAGAAAAAACAACAAACGTTTCTGACTACATACTTTTCGACAATGTGT
ACCCACATTTAGTTTCAAGTTCATTTTGTGCTGAAGATGAAGATCTAACT
CGAGATGATTTAGAGGATTTAACTTTGAAAATGGAGGATGTTAAAACTAT
GATGTTGTTACAGGAAAATAATACACCTCCTGCTGACGAGCAGAAGATTG
GTTTTCAACAACCAGGAATAACTGGAAAAAATAAGCATTTTGAAAAATTT
GAATCTCAAAAAGAACAGATGGAGGTTCTAGATGCGTTGCAGACGATGAT
GGAAAAGTTTCAATCCAGATATGATTTATTTGCTGTTCAAAATCAAAACA
ATAACAATGTCATGTTAATTCTACGTAAAAAGCGGTATAGACGAATACTG
AAAAATTTTGAGGATTGTATTCTGCAGGCTGTTAATGGGAAGAAAAATTC
AGCATTGATTCATAGTTTGCCTTTTGTTATGGATATGTTAGAGGGTAATC
AAGATATACATGGTTTCCAATGCTGTTGTTGTGGCAATTTATTTCATAGT
CAAAGAGCGTTGGATATACATTTGGATTTTTGTGTTAAACAACACTGGAA
AGATCTAATGAAGTTCACACCAAAGTATAAATATTAGAAATTATGAGATA
AAACCTTTATCTATATTAGAAGGAGGATTCTTCTTATCAGCTTCATAAGT
TTTACTACACAGTACATACTAGTACACGTCATTTTCATTCAAATTTTGAT
TCAATTGCATTCAAATTTCTGATGTTTTTGCAAGTAGGATGCTAGCTTTT
GTAGGATATTGTTTTTACTCAAAGAAGGCAAATGCATATTTCCTGCAACT
CTAAAGTAGGAAACAGTAAGGACAGTTTCATAAAATCATATACTTGCAAT
CATTATCAAAACAAGAGTGCAGAATAACGAACACCCATTTTATAAATTGG
AATATTCATAAACGGACTGAGGGTCGTTTTTATTTTCAATGGCTGATACG
TAGTAATTATCCACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTC
TTTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTAT
CATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAAAAAATCTTTA
AAAAATTCTAAAAGTGAAGATAAAAATGAAGAAGAAAAAAAAGAAGATCT
TGTAGAGAAAGTGCTATAACTTTTATTTTCACTGGAGAGATTCTTTGATC
TTAGGAGATCATCACTGTGAAGAAATTTCATTAAAATATTTATTAAATAT
AAAGTCATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAAGA
AACTGCAGAAAACAGCGTTTTTAGACGTCAATAAGCTTATAACTTTGTTT
GATATCTTTTGACTGAATGATTATTTTTGAGAATTCTTTTTACAGTGACG
TTCGATGATCAAGGATTCACCTCAGTGAAAATGATAGTTATAGCACTTTT
CTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAA
TTTTTTTAAAGATTTTTTTATTTTAAATTGTTCCACTCACTAATATCTTT
CCAATGATACCAAATTTATAAAGATTAAAGAATTCCTTCAAAAGTTATAG
GTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGATCCGACGTTTTCT
TAAGATCCAGCAGGATTCAGTAGAATAAAGACATATCTAAGAACCTAGTA
ATAAAACCTATGTATTATTAAGGTTATCCATATATACATGTTTTTTATAA
GCATTGCACTTATAAGCATATCTAGCCTCAGATATGGCAAAATTTTCAGC
ATATGATAAGCATTACCTTGAGCCACGAAAAAGTATTTTTCCGATTTTGA
CTGTTTTTGGCTGGGATTTAAGGGATTCTTGGAATTTCCCTAACATTTTG
CTTGGGGTATAAGCATCTCTGAGCCTGTTCTCGAATTTTTGTATGCTTAT
AAAAAAACATGCAGTACATACGCAGTGATTGAGGGTAAAGGGTAGAAAAG
GGTAGGTATTGTTTGAAAGGAGTCATTTGTATTGTTCTCTTTGAACAATA
AGGGGAGGGTGTCAAATAATTTACTGATATTTGCAAAGTATTTGCTTATG
TACTATATGGTTGACTCCGATGGTACTTGACACCTTATCAGTAGAGCACT
TTAAAGGTGTCATGTCCATAATTGTTATTAAAGAATATTTTAACTCATAT
ATTTTCTTATTAAAGGACCAGTTCATTCACTCACTCACTAAATTGCCTTT
TAGAGAATTAATTAATAGCATGACACATTGATTTGCTTGTACTTAAACTA
TTTGAAACTTTTAAATTGTCTTGTTTTATGTTTTTTTAAAGGTTATTTTT
AGGGATAATGCTGAATAATGATTGACATATTTTTGATAATTTAAAAATTA
TTAGATTAGATTATACTAAAGGTTTATTTTTGAAAATGATAAAAATATTA
GTAGTAATTGTACAGTATATTTTTTAATGCACATTTTCACTTTAAACTTT
CACTTTATATAATGAGATAACGACAATGACTACAGATTGATGCGATAATG
ACATATTAATTGAAAGTTTTAATTCCCTTTTTATTGCATTTTATTGTTTT
CTTTTATGAACATTGTGGATTTTTTGGCAATAGGCCATTTTACGGTCGAA
ATGAATCATGGGTAATTAGAACTAACTGCGCCCCCTTAATGGCTCTCCAT
TGGTCCAAAATGCTTGACTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000158-exon-sc0000001-1575043694:445789..449360 | TCONS_00000158-exon-sc0000001-1575043694:445789..449360 | Clytia hemisphaerica | exon |
| TCONS_00000158-exon-sc0000001-1510915933:445789..449360 | TCONS_00000158-exon-sc0000001-1510915933:445789..449360 | Clytia hemisphaerica | exon |
| TCONS_00000158-exon-sc0000001-1491911889:445789..449360 | TCONS_00000158-exon-sc0000001-1491911889:445789..449360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:445789..449360 - |
Blast
The following BLAST results are available for this feature:
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