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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000146 ID=TCONS_00000146|Name=TCONS_00000146|organism=Clytia hemisphaerica|type=transcript|length=2912bpRun BLAST on NCBI protein sequence of TCONS_00000146-protein >TCONS_00000146-protein ID=TCONS_00000146-protein|Name=TCONS_00000146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp ICFSELGLLLIAVEDRIGSEMVFVVNPSDDVIIRKETRAFLIAQDSKSVKRun BLAST on NCBI transcript from alignment at sc0000001:202028..223845- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000146 ID=TCONS_00000146|Name=TCONS_00000146|organism=Clytia hemisphaerica|type=transcript|length=21818bp|location=Sequence derived from alignment at sc0000001:202028..223845- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:202028..223845- >TCONS_00000146 ID=TCONS_00000146|Name=TCONS_00000146|organism=Clytia hemisphaerica|type=CDS|length=22386bp|location=Sequence derived from alignment at sc0000001:202028..223845- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000146 vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 1.366e-73 Identity = 187/593 (31.53%), Postives = 298/593 (50.25%), Query Frame = 2
Query: 2 ICFSELGLLLIAVEDRIGS-EMVFVVNPSDDVIIRKETRAFLIAQDSKSVKKARRYCGRCHRDIVNQKKKLPVCSCKKSSGEVYTSMRRESAFPSTY----IQLMEQKPRPSFSIDNMSRSTIYCSSAVDRFHASLKKLKYEIPK----------------------------------------DHNL--YDITGTYFWCPERPFDEAIMSLEEAAKEDFMEHVVVAVIADEKSPPLGIRELIQPLRASNQQPKDLKKIIILVADKSFLMKEWASISTFPGVFIVQGSPYRQVDLRVVNVHLADLVIILSPPNIAQEALEGVEKPAMLDKEVIMVTMNLRAMTFEQYRLGDTPNIKRQKHEEALPSLMKNDATNLNRTRH---ERRSMSTNLEYRIRRKNNEQIRMITELVYDSNTLYMXXXXXXXXXXXXXGIWMTKSYACGSVFTDSVLDFLASATYFNPDILTLVRNLVTGSVTGSSDLDIILSQGRQPEGTEATEEINQARKRCRVEQLALNDESFKIFGEVKRFGELFMRALSYHGTLCLGLYRLHNQERRSKS-LNKRYVINFPPPDFXXXXXXXXXXXXQFEEKG 1627
+CF +L LL+IA+E + + E ++NP + + I++ T F IA D+K VK+A YC CH DI + K++ C CK+ +Y MRR F M + R + +D + R+ S +V+ S + + E P D N+ YD TG + WC + ++ I++ EAA HVVV + D S +G+R L+ PLRASN +LK I+ V +L +EW ++ FP V I+ G+P + DLR VN++L D+ +ILS ++ ++ DKE I+ ++N+++M F+ D+ + + + P M + + N H + S++T + I +ITELV D+N ++++ ++DD + E +++T+ +ACG+ F SVLD L SATYFN +ILTL+R LVTG T +L+ ++++ G +T + R RCRV QLAL D F G+ +G+LF +AL + LC G+YRL + + S KRYVI PP +F L DL++ L+QF+
Sbjct: 621 LCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITD-PKRIKKCGCKRPKMSIYKRMRRACCFDCGRSERDCSCMSGRVRGN--VDTLERAFPLSSVSVNDCSTSFRAFEDEQPSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKH-IVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQ------NNIDDTSLQDKECILASLNIKSMQFD-----DSIGVLQANSQGFTPPGMDRSSPD-NSPVHGMLRQPSITTGV----------NIPIITELVNDTNVQFLDQDDDDDPDTE---LYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGAT--PELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNA 1182 The following BLAST results are available for this feature:
BLAST of TCONS_00000146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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