TCONS_00000146-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000146-protein
Unique Name	TCONS_00000146-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	573

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000146-protein ID=TCONS_00000146-protein|Name=TCONS_00000146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
ICFSELGLLLIAVEDRIGSEMVFVVNPSDDVIIRKETRAFLIAQDSKSVK
KARRYCGRCHRDIVNQKKKLPVCSCKKSSGEVYTSMRRESAFPSTYIQLM
EQKPRPSFSIDNMSRSTIYCSSAVDRFHASLKKLKYEIPKDHNLYDITGT
YFWCPERPFDEAIMSLEEAAKEDFMEHVVVAVIADEKSPPLGIRELIQPL
RASNQQPKDLKKIIILVADKSFLMKEWASISTFPGVFIVQGSPYRQVDLR
VVNVHLADLVIILSPPNIAQEALEGVEKPAMLDKEVIMVTMNLRAMTFEQ
YRLGDTPNIKRQKHEEALPSLMKNDATNLNRTRHERRSMSTNLEYRIRRK
NNEQIRMITELVYDSNTLYMEECEEDDEEFESEGIWMTKSYACGSVFTDS
VLDFLASATYFNPDILTLVRNLVTGSVTGSSDLDIILSQGRQPEGTEATE
EINQARKRCRVEQLALNDESFKIFGEVKRFGELFMRALSYHGTLCLGLYR
LHNQERRSKSLNKRYVINFPPPDFLLKKDDLVYVLLQFEEKGYNLQTLSE
EDDKYGGEEKINLEFDSNDQTQL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000083	XLOC_000083	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000146	TCONS_00000146	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 168..377 e-value: 5.5E-15 score: 54.9

Blast

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BLAST of TCONS_00000146-protein vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 6.254e-82
Identity = 187/593 (31.53%), Postives = 298/593 (50.25%), Query Frame = 0

Query:    1 ICFSELGLLLIAVEDRIGS-EMVFVVNPSDDVIIRKETRAFLIAQDSKSVKKARRYCGRCHRDIVNQKKKLPVCSCKKSSGEVYTSMRRESAFPSTY----IQLMEQKPRPSFSIDNMSRSTIYCSSAVDRFHASLKKLKYEIPK----------------------------------------DHNL--YDITGTYFWCPERPFDEAIMSLEEAAKEDFMEHVVVAVIADEKSPPLGIRELIQPLRASNQQPKDLKKIIILVADKSFLMKEWASISTFPGVFIVQGSPYRQVDLRVVNVHLADLVIILSPPNIAQEALEGVEKPAMLDKEVIMVTMNLRAMTFEQYRLGDTPNIKRQKHEEALPSLMKNDATNLNRTRH---ERRSMSTNLEYRIRRKNNEQIRMITELVYDSNTLYMEECEEDDEEFESEGIWMTKSYACGSVFTDSVLDFLASATYFNPDILTLVRNLVTGSVTGSSDLDIILSQGRQPEGTEATEEINQARKRCRVEQLALNDESFKIFGEVKRFGELFMRALSYHGTLCLGLYRLHNQERRSKS-LNKRYVINFPPPDFLLKKDDLVYVLLQFEEKG 542
            +CF +L LL+IA+E +  + E   ++NP + + I++ T  F IA D+K VK+A  YC  CH DI +  K++  C CK+    +Y  MRR   F           M  + R +  +D + R+    S +V+    S +  + E P                                         D N+  YD TG + WC  +  ++ I++  EAA      HVVV +  D  S  +G+R L+ PLRASN    +LK I+  V    +L +EW ++  FP V I+ G+P  + DLR VN++L D+ +ILS           ++  ++ DKE I+ ++N+++M F+     D+  + +   +   P  M   + + N   H    + S++T +           I +ITELV D+N  ++++ ++DD + E   +++T+ +ACG+ F  SVLD L SATYFN +ILTL+R LVTG  T   +L+ ++++     G  +T +    R RCRV QLAL D  F   G+   +G+LF +AL  +  LC G+YRL +    + S   KRYVI  PP +F L   DL++ L+QF+   
Sbjct:  621 LCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITD-PKRIKKCGCKRPKMSIYKRMRRACCFDCGRSERDCSCMSGRVRGN--VDTLERAFPLSSVSVNDCSTSFRAFEDEQPSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIV-FVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQ------NNIDDTSLQDKECILASLNIKSMQFD-----DSIGVLQANSQGFTPPGMDRSSPD-NSPVHGMLRQPSITTGV----------NIPIITELVNDTNVQFLDQDDDDDPDTE---LYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGAT--PELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNA 1182

The following BLAST results are available for this feature:

BLAST of TCONS_00000146-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000146-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
KCMA1	6.254e-82	31.53	Calcium-activated potassium channel subunit alpha-...	[more]

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TCONS_00000146-protein (polypeptide) - C. hemisphaerica

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