TCONS_00000144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000144
Unique NameTCONS_00000144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000144 ID=TCONS_00000144|Name=TCONS_00000144|organism=Clytia hemisphaerica|type=transcript|length=2495bp
TTTTCGATTTAACGTGTGACCGCGTAACTCGTTTTCCTTTTGAAATGAGG
CCAGACCAATAAGCCGGATATGTTTACAAAATAGAACTCAGCTGAGATCG
TGTGGTGTGGATTTATTTTTGGGAAATCTGAACACAAGCTACAACATCTG
CTTATTTGCTACCTACCTACCCTGTTCATTCAACTTCTACTTGACACTTC
AAAGACTACAAACATCTTCTCTTCGTCATTCTGTTCTAGccctcaaaaat
aaaaatgcctAGAAAAGCCATGAAATGCATTGTTGAAGTTGATCTTCATG
TGACAACCTGTCCAGGAACATTTCTACGAGACTATGAATATGTATATCTT
CATATGGAAATGCTTGGGCTTGAAGCTCGCACTAAATCTGTCCCACCAAC
TTTCCCATTATTCTTCCATGAAAGATTAAAATTCGAAAGAacATTCTATG
ACTGCACAGATCCTGCCCTGGTAGCTGCTGTATTAAAAGgAGAAGATTTA
ATCATTGAATTACGTCAACACACAGATTACATATCAGatgGAAAAGTCAT
ATCACATTGCAGTAGCAACACACACGATTTCTTATATCCAGCAATACCAC
CTTATTATGGAAGTGGCCGTGAAATTCTTTTATACAAAACTGCTAAATTT
AAACCTATCCGCGTTACTGGTGAACCAGTAAAGCTAGAATTCTCGACTAA
AACTGTCATCAAAGAAGTTCCCGATTTTGAAACATCGCCACGACGTTCCG
TGTCCCCATCGCGCTCCATGAGACGTTCCGTGTCGCCATCACGTCCACGT
ACCTTCAACGGAAATACGACTGTAGAATCGATCCCAGCCACGGTGTACAG
ATCGAGCTCACCTGCTCGTCACTATAGATCAGTAACCGAACCCACATACC
TTTCATCGACCACGCCCAGAAATTTAACCACACGGTTGGACGATCTCGAT
CTCTCGCTTGCTTCTACTAAGAGAagGGTTCATACAGTCACGCCCAACAT
GAACCACGCCTTACGTTCTTCCCAACGTATTCAACGCCGCGTTGACGAAC
TTGTACGCCGTAGAGATTTCAACTATGTAGATTCAGACGCTGAGAGCGAC
TACTCTTTGGATTTGCTACGCGAATCTTTGCGTGATGAACGAAACGCCCT
TAATGACGCCATCAAAGAGGCGGATCGAGAGGCGTTCTATCGATCGTTGA
ATCGCACCCGATGAAAAGAACAAATTACACACAAGCATACATCAACAAAT
CATCACAACACCTCGAAATGAAAATGtgtaaaaaacaataaaaatgaaat
ttgaaataagaacaaaacgaaatttaattttgataacataaaagttatta
cAATGATAGTTAGTCATTTTCCTCCAATATCCTCCCTTCTTAGAATttta
tcaaagatttttttatcactATCTAGAAAGCTAGATCGCGTCGCTTTTTA
TAATCGAGTACATTATTATAACTTAGTTCGAAACTGGATCATATATATGG
ACGTAttatatttaattttgaaagtgaCAATTTATTACAGATTAATTGAC
TGAAACTCCGTAAAACATTTTCCGTATCTGAAACTCCTAAGAATCGTTCG
ATGATCATTGGAACTGTAATTCTCTCACAAAACAATTTCTCTCGCAATTT
ATGTCATGAGACATTACTATTTTGCCATTTTCACTTAGCGTGGTTTGGTG
GAGTAATTAATTGAATCCTCTTAAGCGGCTGGATGGCTATCTCAGTTCTT
TTGAGtaatacgtttttttattagaacatctaaaaaattttaagccttcg
gatgttcttaacgttttgagtattaagcctaaaaatgttcttattttctc
catttttcatgtatttttgtccattttcgtaagaaattaggtgtttgaga
gtccgcgaagccttaaaatgttcttaacttgttcttagcatttttgccac
cgaagccttatgttcttctaATAGTTTGTTCCTACAAAAAAGATGTGTAC
TCTATATAATAACTCTTTGGAATTAATCAGCAAATTCTAGGCCTCATCTC
GCGATTTGTTATTCGTCTATTTGAGTAAATCTGGTGCGTAATTCAACATA
TATACCATTTTTGGGTttttagcttgttttttttatttggtgGGATATAT
GCATCTTTTTACCtctaaaagaaaattcaaaaaATTTTTATGTTTGTTAA
TTtcatataatataatattttacTCTGGTGTGTATAGTTTAGATAATTgt
gttttttcttaattttatttctttttgaattataaagtcggtttttaatt
tttcaactgGCAAACTTGATGGAAACTTATTCCTGAAATTTATATGGGTT
TTATTTTAGCCATAAAAAACActctttgttaatttttgtgCATATTTAAC
TATGATgatatacattttttttttaagaatttttataCTACTACCATTAT
TAAATAAATACATTACGTCATATCGTAAAAAAGATAGTAAGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000001:183813..196914-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000144 ID=TCONS_00000144|Name=TCONS_00000144|organism=Clytia hemisphaerica|type=transcript|length=13102bp|location=Sequence derived from alignment at sc0000001:183813..196914- (Clytia hemisphaerica)
TTTTCGATTTAACGTGTGACCGCGTAACTCGTTTTCCTTTTGAAATGAGG
CCAGACCAATAAGCCGGATATGTTTACAAAATAGAACTCAGCTGAGATCG
TGTGGTGTGGATTTATTTTTGGGAAATCTGAACACAAGCTACAACATCTG
CTTATTTGCTACCTACCTACCCTGTTCATTCAACTTCTACTTGACACTTC
AAAGACTACAAACATCTTCTCTTCGTCATTCTGTTCTAGCCCTCAAAAAT
AAAAATGCCTAGAAAAGCCATGAAATGCATTGTTGAAGTTGATCTTCATG
TGGTAAGTTCTTTTTTACATTTAAAACTTTGATAGATTCTCTGTTATTTT
CAAGCAAAATTGGTTTTGATTAATTGTTGATTAATTTTAGCAGAGTTTAA
TTCAAGCATAAGTCAATTTAAGTCTATAAGTCCAATCCCACAAGACGGCA
ATCACAATGTAGAATGGCTAAACTTTCTACTTTCTCTCTGGTTGTTATTC
CCGGGGAAACTTTCTTATTAGTCAGTCAGGGATATGTTCAGATTTGCTGT
TTGTCAATTGGTTAGTCAGATCGGTTAAATAGACGATAGGTAATCGGTTA
AATAAAGGGTCATTGTTGTTATGCCTAGATACAGTACCTCAGAGGTAAAT
AATCGTACCAATAGAATTGTATTTTTAATCTAACTTGATCAAGTTTTGTT
GCCCTAATGTTTGATAGTTGGGTTATCAAACTTAAATCAAATACTAGCTA
ATTCTCAAAGAGACCTTAAAAATAGTTCAATTAGTTTGTTTATTGATAAA
CTTCATCAAATATCGAACATATATAATCTGCAACTGACGCAATGCAAAAA
ATCAGCAATCTTAGTATTGATTGATCTTTCAAAAAGATTACATCATTGAC
GCAAAATAGTCAGCCTACTTTTTTTAGCACTGTTGGTGGCAGACTTACCC
CCTCCATTCCGCTTACAGATTGTATAGAAGCTTTTTTGGTGGCCATCAAA
AAAATGCTCTGTTCGTGTCGCAATGGGTGTTAAAAATGCATGCGGGCGGA
CAGGCGGTCGAAAAAATTCCTGTTTTTTTTTTAATTAAACCAGTAATTCG
GGGGCGGGTGGTGACGCGAACAAAACATTTTTTGATGGTCGTCAGAGCAA
TTAAGGAAAAAGCTATACTTTAAAAGAACATTGATTTTCCTGGATTTTTT
TCCGCTTCTCTCATGCACCGGAAAATCACCGAAAAATATGATGCGGGCGG
TTGACGCGAATAGAACAATTTTTCGATGGCCGCCTTTGTCATCCAGGGTT
TTGTCAAATTTGTCAAACATTTCTTCTTGTCAAACTTTGTCAAACTTGAT
GTTTTTAGCCAAACTTAATAACTCGCATCTTAGCAATTTTTGAGAATTTT
GATTAATGAATTTAAATTAATTTTTGTTGTTCAGTTAAGTTCAAGAAAGT
TCTTTTAGTTCTGTAATCAAATTGTTTGATTGTATTATCAAAATAGAAAG
TGCAATTTGAAGGAAAACTACAATAAAGGTCATAATATTGAGAAAGTCGA
TTTTGGGCTATCTCTTTAATTTAATCGAATATTTCAATTCGGAAGGGGTT
GGCAGACTTACAGGCTATATTTTGAGCATTATTTGACTATTTTTGAACTT
TTGAACCCTCAGATACTAAGGTCCTAAGTCTTAAGTCTCATGATAAAACT
CAGAGTTAAAACTCTACCCTTCCAACCTACTTTAGAGCACTTGCAAATCG
CTTGTGGTTCAAAAACTTCCCGGTGTATTTCTCTTTTTTCTCAAATATTA
TATGACCTTGATTGTAGTTGTGTCGCTATTTTTGCTTCAAGGTGATTTCT
ATAACTCAAAGAATAAGTTAAATTATTTTTATTTCTAGTTCTATAAATTT
TAGTCACATAATACACTAACGTACATTATCATGATATTGACATTTTATTT
TATTTCAATCCTTATTCTAGCAGTAGGCTTTTCTATCTTCATATTTCCGA
AGAAAACAGAATTTGCCGCAAAAATTCCTTAAATAGAAGAGGAATTTACA
TTTTAAATATTTTCATTTAAGATTTGGTGCAAAAAAGGGAAACTAGAAAA
GCTTGCAAGCTAAACTAAAATGAGTAATTATAAACTCCAACCAACTTCAT
TATCTAAAAATATAGCACATGCATATTTTACTAATCGTATGCATCAATCT
GTTATAGTTTTAATGCTGGAGTTTAAAATTATTCAATTCGTAATACATCA
TGATTAAGAAAATATCTTTAGTAGTATGTCAGTTTATTTATTATCACAAA
TAAGTGCCAACAATTGTTTCACTGTATTTAATGATATATAATCATGTACT
GTATTCCATTGCTTGTTACTTTTCAGACAACCTGTCCAGGAACATTTCTA
CGAGACTATGAATATGTATATCTTCATATGGAAATGCTTGGGCTTGAAGC
TCGCACTANTATAGAAGCTTTTTTGGTGGCCATCAAAAAAATGCTCTGTT
CGTGTCGCAATGGGTGTTAAAAATGCATGCGGGCGGACAGGCGGTCGAAA
AAATTCCTGTTTTTTTTTTAATTAAACCAGTAATTCGGGGGCGGGTGGTG
ACGCGAACAAAACATTTTTTGATGGTCGTCAGAGCAATTAAGGAAAAAGC
TATACTTTAAAAGAACATTGATTTTCCTGGATTTTTTTCCGCTTCTCTCA
TGCACCGGAAAATCACCGAAAAATATGATGCGGGCGGTTGACGCGAATAG
AACAATTTTTCGATGGCCGCCTTTGTCATCCAGGGTTTTGTCAAATTTGT
CAAACATTTCTTCTTGTCAAACTTTGTCAAACTTGATGTTTTTAGCCAAA
CTTAATAACTCGCATCTTAGCAATTTTTGAGAATTTTGATTAATGAATTT
AAATTAATTTTTGTTGTTCAGTTAAGTTCAAGAAAGTTCTTTTAGTTCTG
TAATCAAATTGTTTGATTGTATTATCAAAATAGAAAGTGCAATTTGAAGG
AAAACTACAATAAAGGTCATAATATTGAGAAAGTCGATTTTGGGCTATCT
CTTTAATTTAATCGAATATTTCAATTCGGAAGGGGTTGGCAGACTTACAG
GCTATATTTTGAGCATTATTTGACTATTTTTGAACTTTTGAACCCTCAGA
TACTAAGGTCCTAAGTCTTAAGTCTCATGATAAAACTCAGAGTTAAAACT
CTACCCTTCCAACCTACTTTAGAGCACTTGCAAATCGCTTGTGGTTCAAA
AACTTCCCGGTGTATTTCTCTTTTTTCTCAAATATTATATGACCTTGATT
GTAGTTGTGTCGCTATTTTTGCTTCAAGGTGATTTCTATATCACAAAGAA
TAAGTTAAATTATTTTTATTTCTAGTTCTATAAATTTTAGTCACATAATA
CACTAAGGTACATTATCATGATATTGACATTTTATTTTATTTCAATCCTT
ATTCTAGCAGTAGGCTTTTCTATCTTCATATTTCCAATGAAAACAGAATT
TGCCGCAAAAATTCCTTAAATAGAAGAGGAATTTACATTTTAAATATTTT
CATTTAAGATTTGGTGCAAAAAAGGGAAACTAGAAAAGCTTGCAAGCTAA
ACTAAAATGAGTAATTATAAACTCCAACCAACTTCATTATCTAAAAATAT
AGCACATGCATATTTTACTAATCGTATGCATCAATCTGTTATAGTTGTAA
TGCTGGAGTTTAAAATTATTCAATTCGTAATACATCATGATTAAGAAAAT
ATCTTTAGTAGTATGTCAGTTTATTTATTATCACAAATCAGTGCCAACAA
TTGTTTCACTGTATTTAATGATATATAATCATGTACTGTATTCCATTGCT
TGTTACTTTTCAGACAACCTGTCCAGGAACATTTCTACGAGACTATGAAT
ATGTATATCTTCATATGGAAATGCTTGGGCTTGAAGCTCGCACTAAATCT
GTCCCACCAACTTTCCCATTATTCTTCCATGAAAGATTAAAATTCGAAAG
AGTAAGTGTTAATTTTTTTGTTTACTTCCATTAAATTTCTAGTTCCTAAA
TAATTGCTAATAAAACTGATCACAACAAGGGTAAACTTTAAGATTTCTAA
CATTTGCAGAAATTGACATTCAAAATAAATACAAAAAATCTACTGTTATG
TTATTAAACTTGAATTCACCCAGGTCGTGTTAATTATAGCTGTTAAACAA
AGTTTAAGCCATGGTAATTTTCAGAAACCCTGCCTTCCCTGTTAATTTTA
AATCGTTGCACTCCTTTTACCTGCATATGGACTTGAATAGGGGCAGAATG
ATAAACTTTTTAGTGTAGTTCCCAGAACTCTCCATTTCCATTGACAGAAT
CTCTTGGTCAATCTGAGTGAATTGATTACAAAAGTTTAAGTTGAAAAATT
TTTTCCCAATAAGGTAATAAGAATTTTTCTGAATATACTTCACTTCTTGA
TTGATTATGTTTTTCTTTTCTAGACATTCTATGACTGCACAGATCCTGCC
CTGGTAGCTGCTGTATTAAAAGGTAATCTAAAGATCCTCTCATAAGTCAT
AAAGATTGAAATATTTTACTCAGTCCAAAACACATTTCTTTAAAAGGAAA
AATATTTTTTTATTCTTTCTTTTCTTTTGAATTTCTTTTAGCATTACTTC
TGGATATTTTTTCAATCTTAGAAAAGCTTTTAAACTTATTCCCGTGTCTA
GACATTTTCATCTTAAACATAATAGTTTCCTAACTTTAAGATTTTAATTC
ACATTAGATTATCATTTTCAAAAAAATTCAGTATGTATGACAAAATATGG
CAACATTTTTATTTTTTTCTTTATTTCTTTAGGAGAAGATTTAATCATTG
AATTACGTCAACACACAGATTACATATCAGGTATGGGAAAGTTTTTATTT
TAATTGAAGATTGCTATCCAAGAATGGCAGATAACTGCCCATAGCTGAAA
TTGAATAGTGTCTTTTCTTTTAATGGTAAAACTCTTCATCTGTCGCCAAA
AACATCTCCAGTTCAGCCACAAAGACACAATTTCTGGCCTGCAAATATGG
AAGAAGAGTTCATGATAATCGCATCCGAAATAGCTTGGGTCATTTCCACA
AGTTTTATTACTTTAATTCAAAAGTAGTGGCAAACACCTGGTCTTTTTTG
GGTGNCCACAAGTTTTATTACTTTAATTTAAAAGTAGTGGCAAACACCTG
GTCTTTTTTGGGTGCCTCTGTATAAAAAAATTCCGTCATGAATATCGTTA
ATTTGTTCCATAACACTGATGACCTAAGACCTACCGCTACAGGACCCAAA
AATATGCCCAGCTGGCACACAACGTCAAAACAACGTCCATTTGACATTCA
TAACGTCCAAATTACGTTATTTGAACGTTAAAACAACGTTGTGTGCCAGC
TTGTTGGGCAATCTCACATGATGCCAGTGGTACTTTTAAAGCCTTTCAAA
TAATTCTTCAAATTGCAGATTAGCAAAATTAGGGAAAAATCAAAATATAA
TAGCCGCATTCTTTTTCACCGTTCAACAAATTGCAGGTTAGCTCAATACA
TTACAGATGATTTAGATCAAATAATTGATTTTTTTACTTTTTAGATGGAA
AAGTCATATCACATTGCAGTAGCAACACACACGATTTCTTATATCCAGCA
ATACCACCTTATTATGGAAGTGGCCGTGAAATTCTTTTATACAAAACTGC
TAAATTTAAACCTATCCGCGTTACTGTAAGCATTTTTTTCTTGAAAGTGT
TTTCTAACAAATACAGTTGTCCTCGTTAACATGCCAAAAGGTTTAATCTC
AAAAGAAATATCTCGGAAAAATTACAATCTTGCACTTCTGTGTGTGAGAT
TGGTCTTTTGTCGTATCAAAACTTTGTTTTTTCCTCTTTATGAAAAGTGC
CTAATCTCAGTATCAAAAATAAACGTTTGCAGCGTAACTATTGATTTTGT
AACGTAATTTTAAGATTGAGCTATTAGTCATGTGAACGACGTTGTGTAAA
TTTCTTCTGTCATAGGCAGATTTCCGTCTCAGTGAAATATATAAAGAGTG
CTTTTCCATCTCAAAATTATACATAATTTACCAACATTTCAAGAATATGT
GCTAATTTTCTGTGTAAAATTCATTTCCTGTCTCAGACCCTCTACAAATA
GTTCTTGGAAATCCAGGTCGAAAATAATATGTAGTAATTTTTTGAAATCA
AATTGAACGTAGAAATCACCTTAAATATTGTATGGTTTTATTTTTTTTGT
ATTTTCTTTCCCAGGGTGAACCAGTAAAGCTAGAATTCTCGACTAAAACT
GTCATCAAAGAAGTTCCCGATTTTGAAACATCGGTAAGTCTTTAATTGAT
TTTTAATTCCTTTTTTTTCATTACTAAAGCTTGATAATTATTGGCAAAGA
TAGTTATAACAATAAAGATTACTCTTATCTTAAGCTATGTTAGACTGCAC
GTATCCCCTCTGATATGTTTTGATATAGGGATTGCGCATCGTGTATAAAA
TTCCCGTCCGAGAGTTACAGACGTCTTTGTGTATTTGAGTTTTGAAAGCT
TAGTAAGTTTTATACGAGAGACCTTTTTTATTAAATTTTAATTAATGATT
TGAATGGCTAGAGGTTCATGGACAGTCATTGGATTTCTGAAGCTTTTTAA
GAGAAACTCGGGGCAACTCGGACGGGAATTTTAGACAAGATTAGCATCCC
CTATAAAATATCAAAACATATCAAAGGGGATGCGTGCAGCTGACAGTTAT
GCATGTATCAAATCAAAGCTTAGACTAGAGTTATTACTTCTGACTGAAGT
TATCTTTTTGATAAGTTTGATGGAAGTAGTAGTGCCATTCAGGCTGAGTT
GAGTGGACCCCAGCCTATTCAAAGCTAAGCTCTAGTATTCAGCACAGAAG
GGATGTTATACGTGTGTGAAGTTAGACAGCTAGGAGCCCGCTGGTACCCC
TTAATTACCTAAGTACCCCCCTCCCAGAAGTTAGACAGCGTCACATTATT
CTAATACACGGGTTGCAAAACTATATCAATGTAGTCAAAACATGTGTTAA
TCGAAAAAGTTCTCTTGATTTTATTCCCATATTACTTACTTTATTTACAA
CTTAAAGCTGATAACTTTTTTTTAGTGTCAATCAGAAATAAATTTCATGT
GACAAACACTAAGAATTTCAAGTAAAAGCATGATTTGGCTTCAGACTTTA
ATTTTGCAACCTGTGTATTGTCTAAAAGCTTGGACATTGAATGGGATTTC
TATAGTGAAGTTTACATAGTATAGAGTATATCATTTGGGTAGAGACTGCG
TCCAACCTAGAACAACGACTATACAGCTATATTAAACAAAGTTATTTAGT
AAATTAACAGTTCTAAGGTGTGAATTTTAACTAAAGAGACTACCGTTCGT
CTCCTCTGAGACAGGGATCTGTAATTAATGATATAATTGTTTATAATTTA
TAATTAATTGAAGTACTTATTAATAACATGCTAAACTATTTATTTAAACT
ATTTATTAAACATATAACTCATAACTCAACATGTTACTTAATGTTAAAAT
TTGTTTTCAATATTAAACTATTTAAGAGCATTAGGCTTCGATAACTGAAA
TGTTAAGATATCTTAAGAAAATGGACAAAAATACTAAAAGAATGGCGAAT
ATAAGAACATGTTAAGAACATTTTTAGGCTACTCAAAAAGTTAAGAACAT
CAGAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAAAGCGTGTACACGG
CTGATGAATTAATTATTTCGATTGAGTAAAATGCCTAAATTTTCTTCTTT
TTTTAAGAATTTAAAAAGTTATTTTGATTCTATTTTATAGATTGCCCTTT
TTATTTATAAGAACATTCAAAACTTTTGAAGCTTTAATATAAATTTTTTC
TCATAAAAACTAATACATTCATTTACTAAAATTTGGCGACTGCAATGAAA
GCTATTTTTCCGGATATTTAATTTCGCGGATACAAAGATTTAAAACACTA
CTTGTTAAAGAAAAACTAATTGATATTCGACTTAAACGATGACTATTTTG
CATAATTTTTTTTTCATTTTTGAAGAACGTGTTTTTTTTGCGCGCATTTA
ATTTGGCAGATTTAGTCTAAAACTGCCAAATTCGCAAAATTTATATAAGT
TAATTAAACAAGATAGCTGAAGTATTAGAAGAGATTTTTAGAAAGTTAAA
ATGTTAGATAATTTAGTGTAGTGAATTTCTGTCAAATCTTCTGTTACTAG
ATTCCAAAAAACATATAGGGCGATTACGTTTTCACGAGAAAAACTAGAAC
GATTTACAATCTTTACCATGACCCCTGCAAAGCATCATTGCCACTGCTAA
TTTTATAACTTTTCTATTTTTCATATTGCTTTTAAAAGTGAATGGATAAT
TTGACGAATTCAAAAGTATCAGCTTCTTACGGTTCCTAACATATTACGAT
TATAATCATTACGCAATCAAACTCAATATTCTTGGAGTATTTCTTAATTT
TTCTTAATTTAATCGCCGAATAGACGATATCGGCTTAACGAAATTCTCCC
CGAATGATTACCCATGATGCATTGCGCAAAAAAAATCAGTAAGTCAATAT
TGTCCGTGAATTTTTTTGCACAATGCATCATGGGTAATGATTCGGGGAGA
ATTCGGTAGGCCGATATCGTCTATATGTATAATTTTTCAAATAACTATAT
AATAATAAAAAACTAATACCTCGCCTTTGTTAATTTCTATTAATTTAGGG
CGCCCTGGATAAAAGCAGTCGTACCATTGCATCGCCTATTAAAAGTACTA
AACATAAACAATTAGCTGATAGTCGTGTTCCAAAACCACCCGGCCGCCCT
AAAACTTCGGGCGCGGGTGATGGTGGGTTGAGGCGCAGTAAATCCAAAAG
TTCAAGCACGCCCGATTTAACTTTGGTGGGGGATTCTAAGAATGAATTTT
TGGTTCGACGTAAGGATGACCAATTGATTTCGAATCGTGATTTTAATTCC
TTTACTCGTCCAAAGCCACGACGTTCCGTGTCCCCATCGCGCTCCATGAG
ACGTTCCGTGTCGCCATCACGTCCACGTACCTTCAACGGAAATACGACTG
TAGAATCGATCCCAGGTAAGCTATGTATTTTATTCTTAACAACTCAAAAA
AAAAAAAGCAATTAAACCCATCTTTAGGAGATCACCCTAAAAAGCCGGGA
AAATCCTGGGGTCCCTGAAAATAAGATGTCTCTCTAAAATTTAGACGAAT
ATACAAGACATATCTCTGTAATTTAGACGAATATACGTTTTTTTTATCAC
AGTTTCATTTTTTAAGGGGTATGGTTTTATAAACTTCCGAAAAGAGAAGG
ATCTAGACAAAAATAATTTTCAGTGTCTTTTTTTCCTTGTACCAAATTTG
ACCGACCCTTCCCCTCAGGTTTATCTAGTATCTTAATTATCCTAGATATC
TCATTTCACTGAAGATTGGTGCACACGAAAGTATGAAATAAGAACTTAGT
TAATTTTTATTATAATACTTTACGCGTACATTCTTTTGCGAGCATAAGCT
TTCGCGAATTGCCCTGTTTAAAATTTTCAAAGACATATTTACTTTCGCGA
AAAAGGCCAAAATTCGCAAAAATCGCGAACGTTTCTACTCGCGAAAGTTT
GTACACCTAAAGTACCTTGTATCTTATTCATTTATTATCTTATTTTTAAA
TTATCTTTTAGCCACGGTGTACAGATCGAGCTCACCTGCTCGTCACTATA
GATCAGTAACCGAACCCACATACCTTTCATCGACCACGCCCAGAAATTTA
ACCACACGGTTGGACGATCTCGATCTCTCGCTTGCTTCTACTAAGAGAAG
GTATTTAAAAAATTATAGCTCATCTCAAATATCGTTTTTCTTTACAAATT
TTCTTTGTATTTATTTACAAGGACATTGCATGGAATTTAGCATAACAAAT
TTGTAGCTTTTACGTTTTAGGCTGCTGAACAATTATACTAGGTCCAACCC
CTTTTGAATTCCGAATCGTTTCATTTTCAAAAATGAACTCAAAATCATCT
TTTTAACCTGGTTTTGTACAACGAAAGAAGAAATGTTTTACTTCTTTNCA
TCTTTTTAACCTGGTTTTGTACAACGAAAGAAGAAATGTTTTACTTCTTT
TATGAGAATATACTTCTTGTCTTTGCATTAATCTACAACTAGTTTTTTTT
TTCGATGTTTCGTACTTTATTTGGGATTTTTTGGAAAATTCACTTCACTA
AGAAAAACCTTTAAAAGCCATTTGACTATAGAACTATATGTATTAAACAT
TTTTTCTCTTTTGATAGGGTTCATACAGTCACGCCCAACATGAACCACGC
CTTACGTTCTTCCCAACGTATTCAACGCCGCGTTGACGAACTTGTACGCC
GTAGAGATTTCAACTATGTAGATTCAGACGCTGAGAGCGACTACTCTTTG
GATTTGCTACGCGAATCTTTGCGTGATGAACGAAACGCCCTTAATGACGC
CATCAAAGAGGCGGATCGAGAGTAAGGAAATTTTATTTGTCTATGCAACT
GTATAGTTGACGGTAAAGATGCTCTCTAATTTGATTTTCAAGAGAAATTG
AATTTTCATTTAATTGTTGACGGAGACTTTCATTATTTTCGAATAATGGA
GCGTATCGAATAATAGAACGTTGAACTGGAGAGCGTGTCCCGGGTGGAAA
TTCCTCGAAAAATAGGAAGGTGTTTATTACAGTTTGTGGTGATTAATCTA
TCATTCATATCATAATGGTGGGTGTTTTGGGCTTTATTCAGATGTGGCTC
CCTATATACAGAGATTGTTGATTTGCAAAGCTCATGAGTCCTGGGAAGGA
CGAAACACGTGTCTGCGGATAGCTATACACATTTTTTCTATAAGAATATC
CAAAAATTTTAAAGCATTCCGATGTTCTTAACTTTTTGAGTTTTAAGCCT
AAAAATGTACTTAAAATGTTCTTATTTGGACCATTTTGTGAGCATTTTCG
ACCATTTTCCTAAGAAAATGGGTGTTTTTGAGTCCTCAAAGCCTTAAAAT
GTTCTAAACTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTAT
ATAGTTTGTTCTTATATTACAAAACGTGTATATGGATNAAATGTTCTAAA
CTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTG
TTCTTATATTACAAAACGTGTATATGGATAAATAATGACTTATAATTTCT
TATTTTTCTTCCAGGGCGTTCTATCGATCGTTGAATCGCACCCGATGAAA
AGAACAAATTACACACAAGGTGAGATACCCTTCAAAGAGGACTTTGAATC
TTATAAAATAATTTAATGCTACAATCATGGTCGAAATATATTGAGAATTT
TATGTATTTTAACGTTTTGCAAAATTTAAAGTTCGGGCGAGAATTTCGAT
TTTATTACTACCACTTTTAATTCCATTGGATTTTTCGATTGTACCTTGAA
ACTTTTAGTTAACCAAAAAACTAAAACAACTTTGCCTGGTAAACATAAGG
TACCTCGATTTGTGAGGTCCTCTTGATTTGTGATATTCATGACGTAATTT
TTTCTACGGAAAGACCCTGGTTTTTGTCAGTAGTGGCAAATTTTATACAA
CTTTTGTCTAGTTTAAATCTGCCACTACTGGCAAAAACCGGGGTTTTTCC
GTAGAAAACATTACGTCATGAATATCATGAATCGAATCCTTCTTGTCTAC
AAGATCCTCAATTTTAATCTTAACTTTTCCTGTTTTCTCTTTTCAGCATA
CATCAACAAATCATCACAACACCTCGAAATGAAAATGTGTAAAAAACAAT
AAAAATGAAATTTGAAATAAGAACAAAACGAAATTTAATTTTGATAACAT
AAAAGTTATTACAATGATAGTTAGTCATTTTCCTCCAATATCCTCCCTTC
TTAGAATTTTATCAAAGATTTTTTTATCACTATCTAGAAAGCTAGATCGC
GTCGCTTTTTATAATCGAGTACATTATTATAACTTAGTTCGAAACTGGAT
CATATATATGGACGTATTATATTTAATTTTGAAAGTGACAATTTATTACA
GATTAATTGACTGAAACTCCGTAAAACATTTTCCGTATCTGAAACTCCTA
AGAATCGTTCGATGATCATTGGAACTGTAATTCTCTCACAAAACAATTTC
TCTCGCAATTTATGTCATGAGACATTACTATTTTGCCATTTTCACTTAGC
GTGGTTTGGTGGAGTAATTAATTGAATCCTCTTAAGCGGCTGGATGGCTA
TCTCAGTTCTTTTGAGTAATACGTTTTTTTATTAGAACATCTAAAAAATT
TTAAGCCTTCGGATGTTCTTAACGTTTTGAGTATTAAGCCTAAAAATGTT
CTTATTTTCTCCATTTTTCATGTATTTTTGTCCATTTTCGTAAGAAATTA
GGTGTTTGAGAGTCCGCGAAGCCTTAAAATGTTCTTAACTTGTTCTTAGC
ATTTTTGCCACCGAAGCCTTATGTTCTTCTAATAGTTTGTTCCTACAAAA
AAGATGTGTACTCTATATAATAACTCTTTGGAATTAATCAGCAAATTCTA
GGCCTCATCTCGCGATTTGTTATTCGTCTATTTGAGTAAATCTGGTGCGT
AATTCAACATATATACCATTTTTGGGTTTTTAGCTTGTTTTTTTTATTTG
GTGGGATATATGCATCTTTTTACCTCTAAAAGAAAATTCAAAAAGTTTGG
ATGTATTTTTTCAGACTTTGTAAAAAATCGAATGATCAAGATTTTTATGT
TTGTTAATTTCATATAATATAATATTTTACTCTGGTGTGTATAGTTTAGA
TAATTGTGTTTTTTCTTAATTTTATTTCTTTTTGAATTATAAAGTCGGTT
TTTAATTTTTCAACTGGCAAACTTGATGGAAACTTATTCCTGAAATTTAT
ATGGGTTTTATTTTAGCCATAAAAAACACTCTTTGTTAATTTTTGTGCAT
ATTTAACTATGATGATATACATTTTTTTTTTAAGAATTTTTATACTACTA
CCATTATTAAATAAATACATTACGTCATATCGTAAAAAAGATAGTAAGCA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000082XLOC_000082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000144-exon-sc0000001-1575043694:196613..196914TCONS_00000144-exon-sc0000001-1575043694:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192914..193051TCONS_00000144-exon-sc0000001-1575043694:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192393..192441TCONS_00000144-exon-sc0000001-1575043694:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192035..192082TCONS_00000144-exon-sc0000001-1575043694:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:191190..191320TCONS_00000144-exon-sc0000001-1575043694:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:190582..190650TCONS_00000144-exon-sc0000001-1575043694:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:187800..187899TCONS_00000144-exon-sc0000001-1575043694:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:187065..187203TCONS_00000144-exon-sc0000001-1575043694:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:186394..186597TCONS_00000144-exon-sc0000001-1575043694:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:185596..185650TCONS_00000144-exon-sc0000001-1575043694:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:184171..185118TCONS_00000144-exon-sc0000001-1575043694:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:183813..184124TCONS_00000144-exon-sc0000001-1575043694:183813..184124Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:196613..196914TCONS_00000144-exon-sc0000001-1510915933:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192914..193051TCONS_00000144-exon-sc0000001-1510915933:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192393..192441TCONS_00000144-exon-sc0000001-1510915933:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192035..192082TCONS_00000144-exon-sc0000001-1510915933:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:191190..191320TCONS_00000144-exon-sc0000001-1510915933:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:190582..190650TCONS_00000144-exon-sc0000001-1510915933:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:187800..187899TCONS_00000144-exon-sc0000001-1510915933:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:187065..187203TCONS_00000144-exon-sc0000001-1510915933:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:186394..186597TCONS_00000144-exon-sc0000001-1510915933:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:185596..185650TCONS_00000144-exon-sc0000001-1510915933:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:184171..185118TCONS_00000144-exon-sc0000001-1510915933:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:183813..184124TCONS_00000144-exon-sc0000001-1510915933:183813..184124Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:196613..196914TCONS_00000144-exon-sc0000001-1491911889:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192914..193051TCONS_00000144-exon-sc0000001-1491911889:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192393..192441TCONS_00000144-exon-sc0000001-1491911889:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192035..192082TCONS_00000144-exon-sc0000001-1491911889:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:191190..191320TCONS_00000144-exon-sc0000001-1491911889:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:190582..190650TCONS_00000144-exon-sc0000001-1491911889:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:187800..187899TCONS_00000144-exon-sc0000001-1491911889:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:187065..187203TCONS_00000144-exon-sc0000001-1491911889:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:186394..186597TCONS_00000144-exon-sc0000001-1491911889:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:185596..185650TCONS_00000144-exon-sc0000001-1491911889:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:184171..185118TCONS_00000144-exon-sc0000001-1491911889:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:183813..184124TCONS_00000144-exon-sc0000001-1491911889:183813..184124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:183813..196914 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.76179	7.8371	6.75618	9.25372	138.402	102.897	45.7568	46.7857	22.0548	20.5173	16.0316	22.0446	5.46238	6.85938	3.35099	4.72704	2.31758	4.08379	7.45362	5.381	4.41372	3.10511	5.51002	5.63276	23.2283	20.5181	5.87073	9.45046	3.52166	3.12731
Blast
[Close]
BLAST of TCONS_00000144 vs. Swiss-Prot (Human)
Match: SPAT6 (Spermatogenesis-associated protein 6 OS=Homo sapiens GN=SPATA6 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.552e-20
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 3 
Query:  255 MPR-KAMKCIVEVDLHVTTCPGTFLRDYEYVYLHMEMLGLEARTKSVPPTFPLFFHERLKFERTFYDCTDPALVAAVLKGEDLIIELRQHTDYISDGKVISHCSSNTHDFLYPA---IPPYYGSGREILLYKTAKFKPIRVTGEPVKLEFSTKTVIKEV 719
            MP+ KA++C + +++   TCPG  L+D E +YL + + G   +T+ VP TFPL F+ R+ FE+ F D  DP  V   L+ +  + EL Q    +  G+ +S    NT DF++P    +  ++ S R++ + + +  +     G   +LEFST +VI E 
Sbjct:    1 MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMVFEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPV--GETLSTYDENTRDFMFPGPNQMSGHHDSNRQVTMRRISGLR-----GNAPRLEFSTTSVITEC 152
The following BLAST results are available for this feature:
BLAST of TCONS_00000144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAT65.552e-2033.33Spermatogenesis-associated protein 6 OS=Homo sapie... [more]
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