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TCONS_00000144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000144
Unique NameTCONS_00000144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000144 ID=TCONS_00000144|Name=TCONS_00000144|organism=Clytia hemisphaerica|type=transcript|length=2495bp
TTTTCGATTTAACGTGTGACCGCGTAACTCGTTTTCCTTTTGAAATGAGG
CCAGACCAATAAGCCGGATATGTTTACAAAATAGAACTCAGCTGAGATCG
TGTGGTGTGGATTTATTTTTGGGAAATCTGAACACAAGCTACAACATCTG
CTTATTTGCTACCTACCTACCCTGTTCATTCAACTTCTACTTGACACTTC
AAAGACTACAAACATCTTCTCTTCGTCATTCTGTTCTAGccctcaaaaat
aaaaatgcctAGAAAAGCCATGAAATGCATTGTTGAAGTTGATCTTCATG
TGACAACCTGTCCAGGAACATTTCTACGAGACTATGAATATGTATATCTT
CATATGGAAATGCTTGGGCTTGAAGCTCGCACTAAATCTGTCCCACCAAC
TTTCCCATTATTCTTCCATGAAAGATTAAAATTCGAAAGAacATTCTATG
ACTGCACAGATCCTGCCCTGGTAGCTGCTGTATTAAAAGgAGAAGATTTA
ATCATTGAATTACGTCAACACACAGATTACATATCAGatgGAAAAGTCAT
ATCACATTGCAGTAGCAACACACACGATTTCTTATATCCAGCAATACCAC
CTTATTATGGAAGTGGCCGTGAAATTCTTTTATACAAAACTGCTAAATTT
AAACCTATCCGCGTTACTGGTGAACCAGTAAAGCTAGAATTCTCGACTAA
AACTGTCATCAAAGAAGTTCCCGATTTTGAAACATCGCCACGACGTTCCG
TGTCCCCATCGCGCTCCATGAGACGTTCCGTGTCGCCATCACGTCCACGT
ACCTTCAACGGAAATACGACTGTAGAATCGATCCCAGCCACGGTGTACAG
ATCGAGCTCACCTGCTCGTCACTATAGATCAGTAACCGAACCCACATACC
TTTCATCGACCACGCCCAGAAATTTAACCACACGGTTGGACGATCTCGAT
CTCTCGCTTGCTTCTACTAAGAGAagGGTTCATACAGTCACGCCCAACAT
GAACCACGCCTTACGTTCTTCCCAACGTATTCAACGCCGCGTTGACGAAC
TTGTACGCCGTAGAGATTTCAACTATGTAGATTCAGACGCTGAGAGCGAC
TACTCTTTGGATTTGCTACGCGAATCTTTGCGTGATGAACGAAACGCCCT
TAATGACGCCATCAAAGAGGCGGATCGAGAGGCGTTCTATCGATCGTTGA
ATCGCACCCGATGAAAAGAACAAATTACACACAAGCATACATCAACAAAT
CATCACAACACCTCGAAATGAAAATGtgtaaaaaacaataaaaatgaaat
ttgaaataagaacaaaacgaaatttaattttgataacataaaagttatta
cAATGATAGTTAGTCATTTTCCTCCAATATCCTCCCTTCTTAGAATttta
tcaaagatttttttatcactATCTAGAAAGCTAGATCGCGTCGCTTTTTA
TAATCGAGTACATTATTATAACTTAGTTCGAAACTGGATCATATATATGG
ACGTAttatatttaattttgaaagtgaCAATTTATTACAGATTAATTGAC
TGAAACTCCGTAAAACATTTTCCGTATCTGAAACTCCTAAGAATCGTTCG
ATGATCATTGGAACTGTAATTCTCTCACAAAACAATTTCTCTCGCAATTT
ATGTCATGAGACATTACTATTTTGCCATTTTCACTTAGCGTGGTTTGGTG
GAGTAATTAATTGAATCCTCTTAAGCGGCTGGATGGCTATCTCAGTTCTT
TTGAGtaatacgtttttttattagaacatctaaaaaattttaagccttcg
gatgttcttaacgttttgagtattaagcctaaaaatgttcttattttctc
catttttcatgtatttttgtccattttcgtaagaaattaggtgtttgaga
gtccgcgaagccttaaaatgttcttaacttgttcttagcatttttgccac
cgaagccttatgttcttctaATAGTTTGTTCCTACAAAAAAGATGTGTAC
TCTATATAATAACTCTTTGGAATTAATCAGCAAATTCTAGGCCTCATCTC
GCGATTTGTTATTCGTCTATTTGAGTAAATCTGGTGCGTAATTCAACATA
TATACCATTTTTGGGTttttagcttgttttttttatttggtgGGATATAT
GCATCTTTTTACCtctaaaagaaaattcaaaaaATTTTTATGTTTGTTAA
TTtcatataatataatattttacTCTGGTGTGTATAGTTTAGATAATTgt
gttttttcttaattttatttctttttgaattataaagtcggtttttaatt
tttcaactgGCAAACTTGATGGAAACTTATTCCTGAAATTTATATGGGTT
TTATTTTAGCCATAAAAAACActctttgttaatttttgtgCATATTTAAC
TATGATgatatacattttttttttaagaatttttataCTACTACCATTAT
TAAATAAATACATTACGTCATATCGTAAAAAAGATAGTAAGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000001:183813..196914-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000144 ID=TCONS_00000144|Name=TCONS_00000144|organism=Clytia hemisphaerica|type=transcript|length=13102bp|location=Sequence derived from alignment at sc0000001:183813..196914- (Clytia hemisphaerica)
TTTTCGATTTAACGTGTGACCGCGTAACTCGTTTTCCTTTTGAAATGAGG CCAGACCAATAAGCCGGATATGTTTACAAAATAGAACTCAGCTGAGATCG TGTGGTGTGGATTTATTTTTGGGAAATCTGAACACAAGCTACAACATCTG CTTATTTGCTACCTACCTACCCTGTTCATTCAACTTCTACTTGACACTTC AAAGACTACAAACATCTTCTCTTCGTCATTCTGTTCTAGCCCTCAAAAAT AAAAATGCCTAGAAAAGCCATGAAATGCATTGTTGAAGTTGATCTTCATG TGGTAAGTTCTTTTTTACATTTAAAACTTTGATAGATTCTCTGTTATTTT CAAGCAAAATTGGTTTTGATTAATTGTTGATTAATTTTAGCAGAGTTTAA TTCAAGCATAAGTCAATTTAAGTCTATAAGTCCAATCCCACAAGACGGCA ATCACAATGTAGAATGGCTAAACTTTCTACTTTCTCTCTGGTTGTTATTC CCGGGGAAACTTTCTTATTAGTCAGTCAGGGATATGTTCAGATTTGCTGT TTGTCAATTGGTTAGTCAGATCGGTTAAATAGACGATAGGTAATCGGTTA AATAAAGGGTCATTGTTGTTATGCCTAGATACAGTACCTCAGAGGTAAAT AATCGTACCAATAGAATTGTATTTTTAATCTAACTTGATCAAGTTTTGTT GCCCTAATGTTTGATAGTTGGGTTATCAAACTTAAATCAAATACTAGCTA ATTCTCAAAGAGACCTTAAAAATAGTTCAATTAGTTTGTTTATTGATAAA CTTCATCAAATATCGAACATATATAATCTGCAACTGACGCAATGCAAAAA ATCAGCAATCTTAGTATTGATTGATCTTTCAAAAAGATTACATCATTGAC GCAAAATAGTCAGCCTACTTTTTTTAGCACTGTTGGTGGCAGACTTACCC CCTCCATTCCGCTTACAGATTGTATAGAAGCTTTTTTGGTGGCCATCAAA AAAATGCTCTGTTCGTGTCGCAATGGGTGTTAAAAATGCATGCGGGCGGA CAGGCGGTCGAAAAAATTCCTGTTTTTTTTTTAATTAAACCAGTAATTCG GGGGCGGGTGGTGACGCGAACAAAACATTTTTTGATGGTCGTCAGAGCAA TTAAGGAAAAAGCTATACTTTAAAAGAACATTGATTTTCCTGGATTTTTT TCCGCTTCTCTCATGCACCGGAAAATCACCGAAAAATATGATGCGGGCGG TTGACGCGAATAGAACAATTTTTCGATGGCCGCCTTTGTCATCCAGGGTT TTGTCAAATTTGTCAAACATTTCTTCTTGTCAAACTTTGTCAAACTTGAT GTTTTTAGCCAAACTTAATAACTCGCATCTTAGCAATTTTTGAGAATTTT GATTAATGAATTTAAATTAATTTTTGTTGTTCAGTTAAGTTCAAGAAAGT TCTTTTAGTTCTGTAATCAAATTGTTTGATTGTATTATCAAAATAGAAAG TGCAATTTGAAGGAAAACTACAATAAAGGTCATAATATTGAGAAAGTCGA TTTTGGGCTATCTCTTTAATTTAATCGAATATTTCAATTCGGAAGGGGTT GGCAGACTTACAGGCTATATTTTGAGCATTATTTGACTATTTTTGAACTT TTGAACCCTCAGATACTAAGGTCCTAAGTCTTAAGTCTCATGATAAAACT CAGAGTTAAAACTCTACCCTTCCAACCTACTTTAGAGCACTTGCAAATCG CTTGTGGTTCAAAAACTTCCCGGTGTATTTCTCTTTTTTCTCAAATATTA TATGACCTTGATTGTAGTTGTGTCGCTATTTTTGCTTCAAGGTGATTTCT ATAACTCAAAGAATAAGTTAAATTATTTTTATTTCTAGTTCTATAAATTT TAGTCACATAATACACTAACGTACATTATCATGATATTGACATTTTATTT TATTTCAATCCTTATTCTAGCAGTAGGCTTTTCTATCTTCATATTTCCGA AGAAAACAGAATTTGCCGCAAAAATTCCTTAAATAGAAGAGGAATTTACA TTTTAAATATTTTCATTTAAGATTTGGTGCAAAAAAGGGAAACTAGAAAA GCTTGCAAGCTAAACTAAAATGAGTAATTATAAACTCCAACCAACTTCAT TATCTAAAAATATAGCACATGCATATTTTACTAATCGTATGCATCAATCT GTTATAGTTTTAATGCTGGAGTTTAAAATTATTCAATTCGTAATACATCA TGATTAAGAAAATATCTTTAGTAGTATGTCAGTTTATTTATTATCACAAA TAAGTGCCAACAATTGTTTCACTGTATTTAATGATATATAATCATGTACT GTATTCCATTGCTTGTTACTTTTCAGACAACCTGTCCAGGAACATTTCTA CGAGACTATGAATATGTATATCTTCATATGGAAATGCTTGGGCTTGAAGC TCGCACTANTATAGAAGCTTTTTTGGTGGCCATCAAAAAAATGCTCTGTT CGTGTCGCAATGGGTGTTAAAAATGCATGCGGGCGGACAGGCGGTCGAAA AAATTCCTGTTTTTTTTTTAATTAAACCAGTAATTCGGGGGCGGGTGGTG ACGCGAACAAAACATTTTTTGATGGTCGTCAGAGCAATTAAGGAAAAAGC TATACTTTAAAAGAACATTGATTTTCCTGGATTTTTTTCCGCTTCTCTCA TGCACCGGAAAATCACCGAAAAATATGATGCGGGCGGTTGACGCGAATAG AACAATTTTTCGATGGCCGCCTTTGTCATCCAGGGTTTTGTCAAATTTGT CAAACATTTCTTCTTGTCAAACTTTGTCAAACTTGATGTTTTTAGCCAAA CTTAATAACTCGCATCTTAGCAATTTTTGAGAATTTTGATTAATGAATTT AAATTAATTTTTGTTGTTCAGTTAAGTTCAAGAAAGTTCTTTTAGTTCTG TAATCAAATTGTTTGATTGTATTATCAAAATAGAAAGTGCAATTTGAAGG AAAACTACAATAAAGGTCATAATATTGAGAAAGTCGATTTTGGGCTATCT CTTTAATTTAATCGAATATTTCAATTCGGAAGGGGTTGGCAGACTTACAG GCTATATTTTGAGCATTATTTGACTATTTTTGAACTTTTGAACCCTCAGA TACTAAGGTCCTAAGTCTTAAGTCTCATGATAAAACTCAGAGTTAAAACT CTACCCTTCCAACCTACTTTAGAGCACTTGCAAATCGCTTGTGGTTCAAA AACTTCCCGGTGTATTTCTCTTTTTTCTCAAATATTATATGACCTTGATT GTAGTTGTGTCGCTATTTTTGCTTCAAGGTGATTTCTATATCACAAAGAA TAAGTTAAATTATTTTTATTTCTAGTTCTATAAATTTTAGTCACATAATA CACTAAGGTACATTATCATGATATTGACATTTTATTTTATTTCAATCCTT ATTCTAGCAGTAGGCTTTTCTATCTTCATATTTCCAATGAAAACAGAATT TGCCGCAAAAATTCCTTAAATAGAAGAGGAATTTACATTTTAAATATTTT CATTTAAGATTTGGTGCAAAAAAGGGAAACTAGAAAAGCTTGCAAGCTAA ACTAAAATGAGTAATTATAAACTCCAACCAACTTCATTATCTAAAAATAT AGCACATGCATATTTTACTAATCGTATGCATCAATCTGTTATAGTTGTAA TGCTGGAGTTTAAAATTATTCAATTCGTAATACATCATGATTAAGAAAAT ATCTTTAGTAGTATGTCAGTTTATTTATTATCACAAATCAGTGCCAACAA TTGTTTCACTGTATTTAATGATATATAATCATGTACTGTATTCCATTGCT TGTTACTTTTCAGACAACCTGTCCAGGAACATTTCTACGAGACTATGAAT ATGTATATCTTCATATGGAAATGCTTGGGCTTGAAGCTCGCACTAAATCT GTCCCACCAACTTTCCCATTATTCTTCCATGAAAGATTAAAATTCGAAAG AGTAAGTGTTAATTTTTTTGTTTACTTCCATTAAATTTCTAGTTCCTAAA TAATTGCTAATAAAACTGATCACAACAAGGGTAAACTTTAAGATTTCTAA CATTTGCAGAAATTGACATTCAAAATAAATACAAAAAATCTACTGTTATG TTATTAAACTTGAATTCACCCAGGTCGTGTTAATTATAGCTGTTAAACAA AGTTTAAGCCATGGTAATTTTCAGAAACCCTGCCTTCCCTGTTAATTTTA AATCGTTGCACTCCTTTTACCTGCATATGGACTTGAATAGGGGCAGAATG ATAAACTTTTTAGTGTAGTTCCCAGAACTCTCCATTTCCATTGACAGAAT CTCTTGGTCAATCTGAGTGAATTGATTACAAAAGTTTAAGTTGAAAAATT TTTTCCCAATAAGGTAATAAGAATTTTTCTGAATATACTTCACTTCTTGA TTGATTATGTTTTTCTTTTCTAGACATTCTATGACTGCACAGATCCTGCC CTGGTAGCTGCTGTATTAAAAGGTAATCTAAAGATCCTCTCATAAGTCAT AAAGATTGAAATATTTTACTCAGTCCAAAACACATTTCTTTAAAAGGAAA AATATTTTTTTATTCTTTCTTTTCTTTTGAATTTCTTTTAGCATTACTTC TGGATATTTTTTCAATCTTAGAAAAGCTTTTAAACTTATTCCCGTGTCTA GACATTTTCATCTTAAACATAATAGTTTCCTAACTTTAAGATTTTAATTC ACATTAGATTATCATTTTCAAAAAAATTCAGTATGTATGACAAAATATGG CAACATTTTTATTTTTTTCTTTATTTCTTTAGGAGAAGATTTAATCATTG AATTACGTCAACACACAGATTACATATCAGGTATGGGAAAGTTTTTATTT TAATTGAAGATTGCTATCCAAGAATGGCAGATAACTGCCCATAGCTGAAA TTGAATAGTGTCTTTTCTTTTAATGGTAAAACTCTTCATCTGTCGCCAAA AACATCTCCAGTTCAGCCACAAAGACACAATTTCTGGCCTGCAAATATGG AAGAAGAGTTCATGATAATCGCATCCGAAATAGCTTGGGTCATTTCCACA AGTTTTATTACTTTAATTCAAAAGTAGTGGCAAACACCTGGTCTTTTTTG GGTGNCCACAAGTTTTATTACTTTAATTTAAAAGTAGTGGCAAACACCTG GTCTTTTTTGGGTGCCTCTGTATAAAAAAATTCCGTCATGAATATCGTTA ATTTGTTCCATAACACTGATGACCTAAGACCTACCGCTACAGGACCCAAA AATATGCCCAGCTGGCACACAACGTCAAAACAACGTCCATTTGACATTCA TAACGTCCAAATTACGTTATTTGAACGTTAAAACAACGTTGTGTGCCAGC TTGTTGGGCAATCTCACATGATGCCAGTGGTACTTTTAAAGCCTTTCAAA TAATTCTTCAAATTGCAGATTAGCAAAATTAGGGAAAAATCAAAATATAA TAGCCGCATTCTTTTTCACCGTTCAACAAATTGCAGGTTAGCTCAATACA TTACAGATGATTTAGATCAAATAATTGATTTTTTTACTTTTTAGATGGAA AAGTCATATCACATTGCAGTAGCAACACACACGATTTCTTATATCCAGCA ATACCACCTTATTATGGAAGTGGCCGTGAAATTCTTTTATACAAAACTGC TAAATTTAAACCTATCCGCGTTACTGTAAGCATTTTTTTCTTGAAAGTGT TTTCTAACAAATACAGTTGTCCTCGTTAACATGCCAAAAGGTTTAATCTC AAAAGAAATATCTCGGAAAAATTACAATCTTGCACTTCTGTGTGTGAGAT TGGTCTTTTGTCGTATCAAAACTTTGTTTTTTCCTCTTTATGAAAAGTGC CTAATCTCAGTATCAAAAATAAACGTTTGCAGCGTAACTATTGATTTTGT AACGTAATTTTAAGATTGAGCTATTAGTCATGTGAACGACGTTGTGTAAA TTTCTTCTGTCATAGGCAGATTTCCGTCTCAGTGAAATATATAAAGAGTG CTTTTCCATCTCAAAATTATACATAATTTACCAACATTTCAAGAATATGT GCTAATTTTCTGTGTAAAATTCATTTCCTGTCTCAGACCCTCTACAAATA GTTCTTGGAAATCCAGGTCGAAAATAATATGTAGTAATTTTTTGAAATCA AATTGAACGTAGAAATCACCTTAAATATTGTATGGTTTTATTTTTTTTGT ATTTTCTTTCCCAGGGTGAACCAGTAAAGCTAGAATTCTCGACTAAAACT GTCATCAAAGAAGTTCCCGATTTTGAAACATCGGTAAGTCTTTAATTGAT TTTTAATTCCTTTTTTTTCATTACTAAAGCTTGATAATTATTGGCAAAGA TAGTTATAACAATAAAGATTACTCTTATCTTAAGCTATGTTAGACTGCAC GTATCCCCTCTGATATGTTTTGATATAGGGATTGCGCATCGTGTATAAAA TTCCCGTCCGAGAGTTACAGACGTCTTTGTGTATTTGAGTTTTGAAAGCT TAGTAAGTTTTATACGAGAGACCTTTTTTATTAAATTTTAATTAATGATT TGAATGGCTAGAGGTTCATGGACAGTCATTGGATTTCTGAAGCTTTTTAA GAGAAACTCGGGGCAACTCGGACGGGAATTTTAGACAAGATTAGCATCCC CTATAAAATATCAAAACATATCAAAGGGGATGCGTGCAGCTGACAGTTAT GCATGTATCAAATCAAAGCTTAGACTAGAGTTATTACTTCTGACTGAAGT TATCTTTTTGATAAGTTTGATGGAAGTAGTAGTGCCATTCAGGCTGAGTT GAGTGGACCCCAGCCTATTCAAAGCTAAGCTCTAGTATTCAGCACAGAAG GGATGTTATACGTGTGTGAAGTTAGACAGCTAGGAGCCCGCTGGTACCCC TTAATTACCTAAGTACCCCCCTCCCAGAAGTTAGACAGCGTCACATTATT CTAATACACGGGTTGCAAAACTATATCAATGTAGTCAAAACATGTGTTAA TCGAAAAAGTTCTCTTGATTTTATTCCCATATTACTTACTTTATTTACAA CTTAAAGCTGATAACTTTTTTTTAGTGTCAATCAGAAATAAATTTCATGT GACAAACACTAAGAATTTCAAGTAAAAGCATGATTTGGCTTCAGACTTTA ATTTTGCAACCTGTGTATTGTCTAAAAGCTTGGACATTGAATGGGATTTC TATAGTGAAGTTTACATAGTATAGAGTATATCATTTGGGTAGAGACTGCG TCCAACCTAGAACAACGACTATACAGCTATATTAAACAAAGTTATTTAGT AAATTAACAGTTCTAAGGTGTGAATTTTAACTAAAGAGACTACCGTTCGT CTCCTCTGAGACAGGGATCTGTAATTAATGATATAATTGTTTATAATTTA TAATTAATTGAAGTACTTATTAATAACATGCTAAACTATTTATTTAAACT ATTTATTAAACATATAACTCATAACTCAACATGTTACTTAATGTTAAAAT TTGTTTTCAATATTAAACTATTTAAGAGCATTAGGCTTCGATAACTGAAA TGTTAAGATATCTTAAGAAAATGGACAAAAATACTAAAAGAATGGCGAAT ATAAGAACATGTTAAGAACATTTTTAGGCTACTCAAAAAGTTAAGAACAT CAGAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAAAGCGTGTACACGG CTGATGAATTAATTATTTCGATTGAGTAAAATGCCTAAATTTTCTTCTTT TTTTAAGAATTTAAAAAGTTATTTTGATTCTATTTTATAGATTGCCCTTT TTATTTATAAGAACATTCAAAACTTTTGAAGCTTTAATATAAATTTTTTC TCATAAAAACTAATACATTCATTTACTAAAATTTGGCGACTGCAATGAAA GCTATTTTTCCGGATATTTAATTTCGCGGATACAAAGATTTAAAACACTA CTTGTTAAAGAAAAACTAATTGATATTCGACTTAAACGATGACTATTTTG CATAATTTTTTTTTCATTTTTGAAGAACGTGTTTTTTTTGCGCGCATTTA ATTTGGCAGATTTAGTCTAAAACTGCCAAATTCGCAAAATTTATATAAGT TAATTAAACAAGATAGCTGAAGTATTAGAAGAGATTTTTAGAAAGTTAAA ATGTTAGATAATTTAGTGTAGTGAATTTCTGTCAAATCTTCTGTTACTAG ATTCCAAAAAACATATAGGGCGATTACGTTTTCACGAGAAAAACTAGAAC GATTTACAATCTTTACCATGACCCCTGCAAAGCATCATTGCCACTGCTAA TTTTATAACTTTTCTATTTTTCATATTGCTTTTAAAAGTGAATGGATAAT TTGACGAATTCAAAAGTATCAGCTTCTTACGGTTCCTAACATATTACGAT TATAATCATTACGCAATCAAACTCAATATTCTTGGAGTATTTCTTAATTT TTCTTAATTTAATCGCCGAATAGACGATATCGGCTTAACGAAATTCTCCC CGAATGATTACCCATGATGCATTGCGCAAAAAAAATCAGTAAGTCAATAT TGTCCGTGAATTTTTTTGCACAATGCATCATGGGTAATGATTCGGGGAGA ATTCGGTAGGCCGATATCGTCTATATGTATAATTTTTCAAATAACTATAT AATAATAAAAAACTAATACCTCGCCTTTGTTAATTTCTATTAATTTAGGG CGCCCTGGATAAAAGCAGTCGTACCATTGCATCGCCTATTAAAAGTACTA AACATAAACAATTAGCTGATAGTCGTGTTCCAAAACCACCCGGCCGCCCT AAAACTTCGGGCGCGGGTGATGGTGGGTTGAGGCGCAGTAAATCCAAAAG TTCAAGCACGCCCGATTTAACTTTGGTGGGGGATTCTAAGAATGAATTTT TGGTTCGACGTAAGGATGACCAATTGATTTCGAATCGTGATTTTAATTCC TTTACTCGTCCAAAGCCACGACGTTCCGTGTCCCCATCGCGCTCCATGAG ACGTTCCGTGTCGCCATCACGTCCACGTACCTTCAACGGAAATACGACTG TAGAATCGATCCCAGGTAAGCTATGTATTTTATTCTTAACAACTCAAAAA AAAAAAAGCAATTAAACCCATCTTTAGGAGATCACCCTAAAAAGCCGGGA AAATCCTGGGGTCCCTGAAAATAAGATGTCTCTCTAAAATTTAGACGAAT ATACAAGACATATCTCTGTAATTTAGACGAATATACGTTTTTTTTATCAC AGTTTCATTTTTTAAGGGGTATGGTTTTATAAACTTCCGAAAAGAGAAGG ATCTAGACAAAAATAATTTTCAGTGTCTTTTTTTCCTTGTACCAAATTTG ACCGACCCTTCCCCTCAGGTTTATCTAGTATCTTAATTATCCTAGATATC TCATTTCACTGAAGATTGGTGCACACGAAAGTATGAAATAAGAACTTAGT TAATTTTTATTATAATACTTTACGCGTACATTCTTTTGCGAGCATAAGCT TTCGCGAATTGCCCTGTTTAAAATTTTCAAAGACATATTTACTTTCGCGA AAAAGGCCAAAATTCGCAAAAATCGCGAACGTTTCTACTCGCGAAAGTTT GTACACCTAAAGTACCTTGTATCTTATTCATTTATTATCTTATTTTTAAA TTATCTTTTAGCCACGGTGTACAGATCGAGCTCACCTGCTCGTCACTATA GATCAGTAACCGAACCCACATACCTTTCATCGACCACGCCCAGAAATTTA ACCACACGGTTGGACGATCTCGATCTCTCGCTTGCTTCTACTAAGAGAAG GTATTTAAAAAATTATAGCTCATCTCAAATATCGTTTTTCTTTACAAATT TTCTTTGTATTTATTTACAAGGACATTGCATGGAATTTAGCATAACAAAT TTGTAGCTTTTACGTTTTAGGCTGCTGAACAATTATACTAGGTCCAACCC CTTTTGAATTCCGAATCGTTTCATTTTCAAAAATGAACTCAAAATCATCT TTTTAACCTGGTTTTGTACAACGAAAGAAGAAATGTTTTACTTCTTTNCA TCTTTTTAACCTGGTTTTGTACAACGAAAGAAGAAATGTTTTACTTCTTT TATGAGAATATACTTCTTGTCTTTGCATTAATCTACAACTAGTTTTTTTT TTCGATGTTTCGTACTTTATTTGGGATTTTTTGGAAAATTCACTTCACTA AGAAAAACCTTTAAAAGCCATTTGACTATAGAACTATATGTATTAAACAT TTTTTCTCTTTTGATAGGGTTCATACAGTCACGCCCAACATGAACCACGC CTTACGTTCTTCCCAACGTATTCAACGCCGCGTTGACGAACTTGTACGCC GTAGAGATTTCAACTATGTAGATTCAGACGCTGAGAGCGACTACTCTTTG GATTTGCTACGCGAATCTTTGCGTGATGAACGAAACGCCCTTAATGACGC CATCAAAGAGGCGGATCGAGAGTAAGGAAATTTTATTTGTCTATGCAACT GTATAGTTGACGGTAAAGATGCTCTCTAATTTGATTTTCAAGAGAAATTG AATTTTCATTTAATTGTTGACGGAGACTTTCATTATTTTCGAATAATGGA GCGTATCGAATAATAGAACGTTGAACTGGAGAGCGTGTCCCGGGTGGAAA TTCCTCGAAAAATAGGAAGGTGTTTATTACAGTTTGTGGTGATTAATCTA TCATTCATATCATAATGGTGGGTGTTTTGGGCTTTATTCAGATGTGGCTC CCTATATACAGAGATTGTTGATTTGCAAAGCTCATGAGTCCTGGGAAGGA CGAAACACGTGTCTGCGGATAGCTATACACATTTTTTCTATAAGAATATC CAAAAATTTTAAAGCATTCCGATGTTCTTAACTTTTTGAGTTTTAAGCCT AAAAATGTACTTAAAATGTTCTTATTTGGACCATTTTGTGAGCATTTTCG ACCATTTTCCTAAGAAAATGGGTGTTTTTGAGTCCTCAAAGCCTTAAAAT GTTCTAAACTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTAT ATAGTTTGTTCTTATATTACAAAACGTGTATATGGATNAAATGTTCTAAA CTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTG TTCTTATATTACAAAACGTGTATATGGATAAATAATGACTTATAATTTCT TATTTTTCTTCCAGGGCGTTCTATCGATCGTTGAATCGCACCCGATGAAA AGAACAAATTACACACAAGGTGAGATACCCTTCAAAGAGGACTTTGAATC TTATAAAATAATTTAATGCTACAATCATGGTCGAAATATATTGAGAATTT TATGTATTTTAACGTTTTGCAAAATTTAAAGTTCGGGCGAGAATTTCGAT TTTATTACTACCACTTTTAATTCCATTGGATTTTTCGATTGTACCTTGAA ACTTTTAGTTAACCAAAAAACTAAAACAACTTTGCCTGGTAAACATAAGG TACCTCGATTTGTGAGGTCCTCTTGATTTGTGATATTCATGACGTAATTT TTTCTACGGAAAGACCCTGGTTTTTGTCAGTAGTGGCAAATTTTATACAA CTTTTGTCTAGTTTAAATCTGCCACTACTGGCAAAAACCGGGGTTTTTCC GTAGAAAACATTACGTCATGAATATCATGAATCGAATCCTTCTTGTCTAC AAGATCCTCAATTTTAATCTTAACTTTTCCTGTTTTCTCTTTTCAGCATA CATCAACAAATCATCACAACACCTCGAAATGAAAATGTGTAAAAAACAAT AAAAATGAAATTTGAAATAAGAACAAAACGAAATTTAATTTTGATAACAT AAAAGTTATTACAATGATAGTTAGTCATTTTCCTCCAATATCCTCCCTTC TTAGAATTTTATCAAAGATTTTTTTATCACTATCTAGAAAGCTAGATCGC GTCGCTTTTTATAATCGAGTACATTATTATAACTTAGTTCGAAACTGGAT CATATATATGGACGTATTATATTTAATTTTGAAAGTGACAATTTATTACA GATTAATTGACTGAAACTCCGTAAAACATTTTCCGTATCTGAAACTCCTA AGAATCGTTCGATGATCATTGGAACTGTAATTCTCTCACAAAACAATTTC TCTCGCAATTTATGTCATGAGACATTACTATTTTGCCATTTTCACTTAGC GTGGTTTGGTGGAGTAATTAATTGAATCCTCTTAAGCGGCTGGATGGCTA TCTCAGTTCTTTTGAGTAATACGTTTTTTTATTAGAACATCTAAAAAATT TTAAGCCTTCGGATGTTCTTAACGTTTTGAGTATTAAGCCTAAAAATGTT CTTATTTTCTCCATTTTTCATGTATTTTTGTCCATTTTCGTAAGAAATTA GGTGTTTGAGAGTCCGCGAAGCCTTAAAATGTTCTTAACTTGTTCTTAGC ATTTTTGCCACCGAAGCCTTATGTTCTTCTAATAGTTTGTTCCTACAAAA AAGATGTGTACTCTATATAATAACTCTTTGGAATTAATCAGCAAATTCTA GGCCTCATCTCGCGATTTGTTATTCGTCTATTTGAGTAAATCTGGTGCGT AATTCAACATATATACCATTTTTGGGTTTTTAGCTTGTTTTTTTTATTTG GTGGGATATATGCATCTTTTTACCTCTAAAAGAAAATTCAAAAAGTTTGG ATGTATTTTTTCAGACTTTGTAAAAAATCGAATGATCAAGATTTTTATGT TTGTTAATTTCATATAATATAATATTTTACTCTGGTGTGTATAGTTTAGA TAATTGTGTTTTTTCTTAATTTTATTTCTTTTTGAATTATAAAGTCGGTT TTTAATTTTTCAACTGGCAAACTTGATGGAAACTTATTCCTGAAATTTAT ATGGGTTTTATTTTAGCCATAAAAAACACTCTTTGTTAATTTTTGTGCAT ATTTAACTATGATGATATACATTTTTTTTTTAAGAATTTTTATACTACTA CCATTATTAAATAAATACATTACGTCATATCGTAAAAAAGATAGTAAGCA AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000082XLOC_000082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000144-exon-sc0000001-1575043694:196613..196914TCONS_00000144-exon-sc0000001-1575043694:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192914..193051TCONS_00000144-exon-sc0000001-1575043694:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192393..192441TCONS_00000144-exon-sc0000001-1575043694:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:192035..192082TCONS_00000144-exon-sc0000001-1575043694:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:191190..191320TCONS_00000144-exon-sc0000001-1575043694:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:190582..190650TCONS_00000144-exon-sc0000001-1575043694:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:187800..187899TCONS_00000144-exon-sc0000001-1575043694:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:187065..187203TCONS_00000144-exon-sc0000001-1575043694:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:186394..186597TCONS_00000144-exon-sc0000001-1575043694:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:185596..185650TCONS_00000144-exon-sc0000001-1575043694:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:184171..185118TCONS_00000144-exon-sc0000001-1575043694:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1575043694:183813..184124TCONS_00000144-exon-sc0000001-1575043694:183813..184124Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:196613..196914TCONS_00000144-exon-sc0000001-1510915933:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192914..193051TCONS_00000144-exon-sc0000001-1510915933:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192393..192441TCONS_00000144-exon-sc0000001-1510915933:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:192035..192082TCONS_00000144-exon-sc0000001-1510915933:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:191190..191320TCONS_00000144-exon-sc0000001-1510915933:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:190582..190650TCONS_00000144-exon-sc0000001-1510915933:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:187800..187899TCONS_00000144-exon-sc0000001-1510915933:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:187065..187203TCONS_00000144-exon-sc0000001-1510915933:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:186394..186597TCONS_00000144-exon-sc0000001-1510915933:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:185596..185650TCONS_00000144-exon-sc0000001-1510915933:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:184171..185118TCONS_00000144-exon-sc0000001-1510915933:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1510915933:183813..184124TCONS_00000144-exon-sc0000001-1510915933:183813..184124Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:196613..196914TCONS_00000144-exon-sc0000001-1491911889:196613..196914Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192914..193051TCONS_00000144-exon-sc0000001-1491911889:192914..193051Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192393..192441TCONS_00000144-exon-sc0000001-1491911889:192393..192441Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:192035..192082TCONS_00000144-exon-sc0000001-1491911889:192035..192082Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:191190..191320TCONS_00000144-exon-sc0000001-1491911889:191190..191320Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:190582..190650TCONS_00000144-exon-sc0000001-1491911889:190582..190650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:187800..187899TCONS_00000144-exon-sc0000001-1491911889:187800..187899Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:187065..187203TCONS_00000144-exon-sc0000001-1491911889:187065..187203Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:186394..186597TCONS_00000144-exon-sc0000001-1491911889:186394..186597Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:185596..185650TCONS_00000144-exon-sc0000001-1491911889:185596..185650Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:184171..185118TCONS_00000144-exon-sc0000001-1491911889:184171..185118Clytia hemisphaericaexon
TCONS_00000144-exon-sc0000001-1491911889:183813..184124TCONS_00000144-exon-sc0000001-1491911889:183813..184124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:183813..196914 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.76179 7.8371 6.75618 9.25372 138.402 102.897 45.7568 46.7857 22.0548 20.5173 16.0316 22.0446 5.46238 6.85938 3.35099 4.72704 2.31758 4.08379 7.45362 5.381 4.41372 3.10511 5.51002 5.63276 23.2283 20.5181 5.87073 9.45046 3.52166 3.12731
Blast
BLAST of TCONS_00000144 vs. Swiss-Prot (Human)
Match: SPAT6 (Spermatogenesis-associated protein 6 OS=Homo sapiens GN=SPATA6 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.552e-20
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  255 MPR-KAMKCIVEVDLHVTTCPGTFLRDYEYVYLHMEMLGLEARTKSVPPTFPLFFHERLKFERTFYDCTDPALVAAVLKGEDLIIELRQHTDYISDGKVISHCSSNTHDFLYPA---IPPYYGSGREILLYKTAKFKPIRVTGEPVKLEFSTKTVIKEV 719
            MP+ KA++C + +++   TCPG  L+D E +YL + + G   +T+ VP TFPL F+ R+ FE+ F D  DP  V   L+ +  + EL Q    +  G+ +S    NT DF++P    +  ++ S R++ + + +  +     G   +LEFST +VI E 
Sbjct:    1 MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMVFEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPV--GETLSTYDENTRDFMFPGPNQMSGHHDSNRQVTMRRISGLR-----GNAPRLEFSTTSVITEC 152          
The following BLAST results are available for this feature:
BLAST of TCONS_00000144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAT65.552e-2033.33Spermatogenesis-associated protein 6 OS=Homo sapie... [more]
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