|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000125 ID=TCONS_00000125|Name=TCONS_00000125|organism=Clytia hemisphaerica|type=transcript|length=3777bp
ttttcagaaacttgattaagacgttgtaaatcaaaattgtcattttgaaa
atttctaaattttcagtttggactttgcatcatcgaaaatcttgaaatac
tttataaaaatcataaattttacatccatcgggtcgtaaatttaagggaa
aacacaaatatgttcatagttccccctattaccactaggcttaataattt
aattttaactacacctacgttttgggggccccaaaccaccgttttgacaa
ccaggggtatactgtaaaaattttatcaaacaaatttatgcccaaaaccc
tctaaatcacatttcaaaactatggtcaaaattttgtattcatatcttaa
agatatctcgagaagtcgctaaaattgcaaacctccgtttttggggccat
tagaaaaaagctatctttaagcgatttaaaaatattgttgaaattgaaaa
ttttgaaaaagaacttccaggaaataaagtagagatgttaaagcttttca
tgcagcaaaaatttttgtaaaaccttttttcctctagatttgagagacat
ttcaaatttgattgacgttttgggggccacatactgtagaaCGCTATACC
TTTACCTCTACTATTTATGTCATATTGATTCTCATTCTGTTTTGAGACTC
TCTACAGTAAATTTCTGAGTCGAAATCAGAATTAATCTCTTCCAGTTCCC
GTTCAAACAAAGAGCGACCAGTTTATGCGATTTATTATACACGTGACATA
CACACATAACTGTGTTACCGGTAGATATTCGATTCAATTCTTAACTCATC
ACCCGTTTAAAATTTCTTCTAATTCCTCGTCAGACAGTTTGACGTCCGAA
TACGCTCCAGAATAACTGTTCGTCGACATGGTGATTGCAAAATCGACCTT
GGGTTCGTCCTCGGTTGGTGACTTAATTTCACCAAAATCAGTATTTATAT
CCATTGGTGTTACATGCGACCCACTTGAAGAGGTATCATTCGTTTCAGTC
TTATTAAACATCTGTAAATTGACAGAAGAAGCTTGGAAAACTCCTTTGAT
ATCTTCCTCTTCCTCCATAAGTCTTTTCAAAGGGTTTCCATAATCTTTAA
ATCCAGTTTTATCGTTAGATACGGTACTTGAAAAAGAACCTCCGGCGATT
GCAGTACCTATATCAACTATATCACTCAACGAATCAACATCGTTACTAAA
TCGACGTTCTAGAGTTTGTTGAACGTCGATTGTAGAGTCTTGCTGTTGGT
TTTGGGTGGTAGAGCTGAATTGATCAGACGACATTTGGTTAGGAATAGTT
CCCTGGGAAATTTGTGTCGAATCAAACATGCCATCTTCTTGGGTAGTGTC
CATAGATTGTTGGTCTAAAAGATCCGAATAAAAATCACCGAGTTCGTTAG
CTAAAGCTTGACTGAAAATCGCGTTCGTAGGATCCGCCTTTATGTCTGAT
GTTTTAGTGGTTTGTTGTAAAATGTCAGGGTTGTTTAGAACAGTCTGTTT
TGCTGGTGTACTGTGCGACATGCTACTGCTTTCAGATTTAAGATGAGAAG
ATGTTGCATTCTGGTTGTAATTTGTAGGACTTTCTCTAGCTGTACGCTTT
GAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAACAAGGATTTCTT
TCGAAGTTGATCATTTGGAAGTTCGCCACTGTCCTTACGCCCTTCAATTG
GGCGGTCGCTATCATTCGATAATCTTCCGTTCGGTAAAATACCATCACTG
CTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTATTGTACAATAAC
ACTACTATTTCCAGAGCAAAGCGGTGATTCCAGGGATTCAGGGGTCACGG
GTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTTTctgttcattt
ttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGGACCATGAAGTG
GACCTCATGAGACCGACATTTGGGTCGTTCATGTTGATACTGGACCACTG
GGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTAAAGAACAACAA
TAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAAGTAGAAAAGAA
GGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAAAATCCAGATAA
TTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTCTCCCCTAGGGC
TGCACTGGTAAGAAACCCCTCAGTTATGCATAACAAGCGCCCCATGCTGA
ACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACCCCTTTCATATT
GTACCCTTTATCAAACACACAGACAACTTACTTACTCACTTACTTGGTAC
TGTCTAAATAACACAGTGCTCAAATATACTAGTTTGagtaaaaaaaaacg
atttataagttaatttcatactcaaagtttgATGCCATCTaggatggcaa
tcttcagtgaaatcaCTCAGCGATCAAATatatagtagttttgaaaaggA
TATGGGTAGTTGGAAAAGGACTTTTCGCGATGTAAGAAGAGAGAACGCAT
AAAGTAGAAACATTGATTGaagaatgaaacaaaaaacgGCGAAATGAAGG
AGATTCGATGAAAAGTTATACTGCAAAAGAATCATCGTCTAAAAGCTGAA
AAGCTAGAAAAATATCACGCCGGAAAGATTCATGGCCTTTATACTTACGA
CTTTAGCCTGAAAACACTTTCACTTTTAAGAACCCATGTTAAGTAATGGG
GTCTTAAAAGGGGAGAAAGTATTTATCATAAAACTTTCTAGATATTTTAT
GTTAACTTTGTTTATAACATCAACCTATAAGATAAAGGGAAGAGTCAGGA
TTAAAAGAGTGTACAAGTTGAACTTTACAGCTAAATATAGCCAaatatag
aaaatttgaatgttgTATTTCAACTTCGCCAATAATGGAATGGAATGGCT
AACCTGTTCATCTTGAGAGAACGAAGTGAAAACAAAATCCCAAATATTCA
AGGCTTGActatatttcaataaaaagtatcgaatgaaaaatcgaggaaaa
atcgagaaatattcgataaaagatcgaagcaaaatcgattttgtaaaaat
taagtATACTAACCGTTTTTTGAAACGATAAACAAATCGTTTAGAAGGTG
AAAACTTTTCCCAATATCGCGCGCCTTTACAACATTTTACTAAAGTTATC
GATTTCACAATactaatcttttttattttaaagtttttgaatctGTTGGG
AtaactattttttgaaatttgaaaattttctctagTCTATATATACAGAA
AACAAAGTCTCAGAAAATTTCGGAACCGAAGGTTAAttattctcaaaaat
atttacagtACTTTTTTCTGTGAAGATTTGTTTCaagaagaaaacaattt
tttcagcTCTGGGTTTTCTTCGAATCAGCACATTTAAAAAGTACTGTTCT
AGTTTTGACAGTAGAATGTTGTCTTTGTGTTTTCATAGGATGCAAAAAAA
CAGCTAACTGGTTTAATAGCAGCTTGCATCCTATTTTTAAAAGACTGGAA
GTCCCCTTTCTCAAGAAGTCAGGTTTTGCACACTTATGCTTAGCTTGACT
TCTacaagaaagtttttttcaaaagcaatGGTAGTACCAGGACAAAACAA
GCAAGTTCAAGGTTTCGGACAGAATATTAAAGAGCATTGGTGAAGATGCA
CCAAGCACCAAAgcaattttactcaattttgcCTTGAATATTACTGTCAG
TAATCTTGAATGCTGGGAATATTGAAT Run BLAST on NCBI transcript from alignment at sc0000001:2445250..2449787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000125 ID=TCONS_00000125|Name=TCONS_00000125|organism=Clytia hemisphaerica|type=transcript|length=4538bp|location=Sequence derived from alignment at sc0000001:2445250..2449787+ (Clytia hemisphaerica)
ttttcagaaacttgattaagacgttgtaaatcaaaattgtcattttgaaa
atttctaaattttcagtttggactttgcatcatcgaaaatcttgaaatac
tttataaaaatcataaattttacatccatcgggtcgtaaatttaagggaa
aacacaaatatgttcatagttccccctattaccactaggcttaataattt
aattttaactacacctacgttttgggggccccaaaccaccgttttgacaa
ccaggggtatactgtaaaaattttatcaaacaaatttatgcccaaaaccc
tctaaatcacatttcaaaactatggtcaaaattttgtattcatatcttaa
agatatctcgagaagtcgctaaaattgcaaacctccgtttttggggccat
tagaaaaaagctatctttaagcgatttaaaaatattgttgaaattgaaaa
ttttgaaaaagaacttccaggaaataaagtagagatgttaaagcttttca
tgcagcaaaaatttttgtaaaaccttttttcctctagatttgagagacat
ttcaaatttgattgacgttttgggggccacatactgtagaaCGCTATACC
TTTACCTCTACTATTTATGTCATATTGATTCTCATTCTGTTTTGAGACTC
TCTACAGTAAATTTCTGAGTCGAAATCAGAATTAATCTCTTCCAGTTCCC
GTTCAAACAAAGAGCGACCAGTTTATGCGATTTATTATACACGTGACATA
CACACATAACTGTGTTACCGGTAGATATTCGATTCAATTCTTAACTCATC
ACCCGTTTAAAATTTCTTCTAATTCCTCGTCAGACAGTTTGACGTCCGAA
TACGCTCCAGAATAACTGTTCGTCGACATGGTGATTGCAAAATCGACCTT
GGGTTCGTCCTCGGTTGGTGACTTAATTTCACCAAAATCAGTATTTATAT
CCATTGGTGTTACATGCGACCCACTTGAAGAGGTATCATTCGTTTCAGTC
TTATTAAACATCTGTAAATTGACAGAAGAAGCTTGGAAAACTCCTTTGAT
ATCTTCCTCTTCCTCCATAAGTCTTTTCAAAGGGTTTCCATAATCTTTAA
ATCCAGTTTTATCGTTAGATACGGTACTTGAAAAAGAACCTCCGGCGATT
GCAGTACCTATATCAACTATATCACTCAACGAATCAACATCGTTACTAAA
TCGACGTTCTAGAGTTTGTTGAACGTCGATTGTAGAGTCTTGCTGTTGGT
TTTGGGTGGTAGAGCTGAATTGATCAGACGACATTTGGTTAGGAATAGTT
CCCTGGGAAATTTGTGTCGAATCAAACATGCCATCTTCTTGGGTAGTGTC
CATAGATTGTTGGTCTAAAAGATCCGAATAAAAATCACCGAGTTCGTTAG
CTAAAGCTTGACTGAAAATCGCGTTCGTAGGATCCGCCTTTATGTCTGAT
GTTTTAGTGGTTTGTTGTAAAATGTCAGGGTTGTTTAGAACAGTCTGTTT
TGCTGGTGTACTGTGCGACATGCTACTGCTTTCAGATTTAAGATGAGAAG
ATGTTGCATTCTGGTTGTAATTTGTAGGACTTTCTCTAGCTGTACGCTTT
GAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAACAAGGATTTCTT
TCGAAGTTGATCATCTGGAAGATCGCGATTATCCTTACGCCCTTCGCTTG
GGCGGTCGCTATCATTCAATAATCTTCCGTTCGGTAAAATACCATCACTG
CTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTATTGTACAATAAC
ACTACTATTACCAGAGCAAAGCGGTGATTCCAGGGATTCAGGGGTCACGG
GTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTTTctgttcattt
ttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGGACCATGAAGTG
GACCTCATGAGACCGACATGTGGGTCGTTCATGTTGATACTGGACCACTG
GGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTAAAGAACAACAA
TAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAAGTAGAAAAGAA
GGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAAAATCCAGATAA
TTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTCTCTCCTAGGGC
TGCACTGGTAAAGAAACCCCTCAGTTATGCATAACAAGCGCCCCATGCTG
AACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACCCCTTTCATAT
TGTACCCTTTATCAAACACACAGACAACTTACTTACTCACTTACTTGGTA
CTGNTTGCTTTGAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAAC
AAGGATTTCTTTCGAAGTTGATCATTTGGAAGTTCGCCACTGTCCTTACG
CCCTTCAATTGGGCGGTCGCTATCATTCGATAATCTTCCGTTCGGTAAAA
TACCATCACTGCTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTAT
TGTACAATAACACTACTATTTCCAGAGCAAAGCGGTGATTCCAGGGATTC
AGGGGTCACGGGTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTT
TctgttcatttttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGG
ACCATGAAGTGGACCTCATGAGACCGACATTTGGGTCGTTCATGTTGATA
CTGGACCACTGGGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTA
AAGAACAACAATAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAA
GTAGAAAAGAAGGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAA
AATCCAGATAATTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTC
TCCCCTAGGGCTGCACTGGTAAGAAACCCCTCAGTTATGCATAACAAGCG
CCCCATGCTGAACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACC
CCTTTCATATTGTACCCTTTATCAAACACACAGACAACTTACTTACTCAC
TTACTTGGTACTGTCTAAATAACACAGTGCTCAAATATACTAGTTTGagt
aaaaaaaaacgatttataagttaatttcatactcaaagtttgATGCCATC
TaggatggcaatcttcagtgaaatcaCTCAGCGATCAAATatatagtagt
tttgaaaaggATATGGGTAGTTGGAAAAGGACTTTTCGCGATGTAAGAAG
AGAGAACGCATAAAGTAGAAACATTGATTGaagaatgaaacaaaaaacgG
CGAAATGAAGGAGATTCGATGAAAAGTTATACTGCAAAAGAATCATCGTC
TAAAAGCTGAAAAGCTAGAAAAATATCACGCCGGAAAGATTCATGGCCTT
TATACTTACGACTTTAGCCTGAAAACACTTTCACTTTTAAGAACCCATGT
TAAGTAATGGGGTCTTAAAAGGGGAGAAAGTATTTATCATAAAACTTTCT
AGATATTTTATGTTAACTTTGTTTATAACATCAACCTATAAGATAAAGGG
AAGAGTCAGGATTAAAAGAGTGTACAAGTTGAACTTTACAGCTAAATATA
GCCAaatatagaaaatttgaatgttgTATTTCAACTTCGCCAATAATGGA
ATGGAATGGCTAACCTGTTCATCTTGAGAGAACGAAGTGAAAACAAAATC
CCAAATATTCAAGGCTTGActatatttcaataaaaagtatcgaatgaaaa
atcgaggaaaaatcgagaaatattcgataaaagatcgaagcaaaatcgat
tttgtaaaaattaagtATACTAACCGTTTTTTGAAACGATAAACAAATCG
TTTAGAAGGTGAAAACTTTTCCCAATATCGCGCGCCTTTACAACATTTTA
CTAAAGTTATCGATTTCACAATactaatcttttttattttaaagtttttg
aatctGTTGGGAtaactattttttgaaatttgaaaattttctctagTCTA
TATATACAGAAAACAAAGTCTCAGAAAATTTCGGAACCGAAGGTTAAtta
ttctcaaaaatatttacagtACTTTTTTCTGTGAAGATTTGTTTCaagaa
gaaaacaattttttcagcTCTGGGTTTTCTTCGAATCAGCACATTTAAAA
AGTACTGTTCTAGTTTTGACAGTAGAATGTTGTCTTTGTGTTTTCATAGG
ATGCAAAAAAACAGCTAACTGGTTTAATAGCAGCTTGCATCCTATTTTTA
AAAGACTGGAAGTCCCCTTTCTCAAGAAGTCAGGTTTTGCACACTTATGC
TTAGCTTGACTTCTacaagaaagtttttttcaaaagcaatGGTAGTACCA
GGACAAAACAAGCAAGTTCAAGGTTTCGGACAGAATATTAAAGAGCATTG
GTGAAGATGCACCAAGCACCAAAgcaattttactcaattttgcCTTGAAT
ATTACTGTCAGTAATCTTGAATGCTGGGAATATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000125-exon-sc0000001-1491911889:2445250..2446877 | TCONS_00000125-exon-sc0000001-1491911889:2445250..2446877 | Clytia hemisphaerica | exon |
| TCONS_00000125-exon-sc0000001-1510915933:2445250..2446877 | TCONS_00000125-exon-sc0000001-1510915933:2445250..2446877 | Clytia hemisphaerica | exon |
| TCONS_00000125-exon-sc0000001-1575043694:2445250..2446877 | TCONS_00000125-exon-sc0000001-1575043694:2445250..2446877 | Clytia hemisphaerica | exon |
| TCONS_00000125-exon-sc0000001-1491911889:2447639..2449787 | TCONS_00000125-exon-sc0000001-1491911889:2447639..2449787 | Clytia hemisphaerica | exon |
| TCONS_00000125-exon-sc0000001-1510915933:2447639..2449787 | TCONS_00000125-exon-sc0000001-1510915933:2447639..2449787 | Clytia hemisphaerica | exon |
| TCONS_00000125-exon-sc0000001-1575043694:2447639..2449787 | TCONS_00000125-exon-sc0000001-1575043694:2447639..2449787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2445250..2449787 + |
Blast
The following BLAST results are available for this feature:
|
