TCONS_00000125 (transcript) - C. hemisphaerica

Overview
Name
Unique NameTCONS_00000125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000125 ID=TCONS_00000125|Name=|organism=Clytia hemisphaerica|type=transcript|length=3777bp
ttttcagaaacttgattaagacgttgtaaatcaaaattgtcattttgaaa
atttctaaattttcagtttggactttgcatcatcgaaaatcttgaaatac
tttataaaaatcataaattttacatccatcgggtcgtaaatttaagggaa
aacacaaatatgttcatagttccccctattaccactaggcttaataattt
aattttaactacacctacgttttgggggccccaaaccaccgttttgacaa
ccaggggtatactgtaaaaattttatcaaacaaatttatgcccaaaaccc
tctaaatcacatttcaaaactatggtcaaaattttgtattcatatcttaa
agatatctcgagaagtcgctaaaattgcaaacctccgtttttggggccat
tagaaaaaagctatctttaagcgatttaaaaatattgttgaaattgaaaa
ttttgaaaaagaacttccaggaaataaagtagagatgttaaagcttttca
tgcagcaaaaatttttgtaaaaccttttttcctctagatttgagagacat
ttcaaatttgattgacgttttgggggccacatactgtagaaCGCTATACC
TTTACCTCTACTATTTATGTCATATTGATTCTCATTCTGTTTTGAGACTC
TCTACAGTAAATTTCTGAGTCGAAATCAGAATTAATCTCTTCCAGTTCCC
GTTCAAACAAAGAGCGACCAGTTTATGCGATTTATTATACACGTGACATA
CACACATAACTGTGTTACCGGTAGATATTCGATTCAATTCTTAACTCATC
ACCCGTTTAAAATTTCTTCTAATTCCTCGTCAGACAGTTTGACGTCCGAA
TACGCTCCAGAATAACTGTTCGTCGACATGGTGATTGCAAAATCGACCTT
GGGTTCGTCCTCGGTTGGTGACTTAATTTCACCAAAATCAGTATTTATAT
CCATTGGTGTTACATGCGACCCACTTGAAGAGGTATCATTCGTTTCAGTC
TTATTAAACATCTGTAAATTGACAGAAGAAGCTTGGAAAACTCCTTTGAT
ATCTTCCTCTTCCTCCATAAGTCTTTTCAAAGGGTTTCCATAATCTTTAA
ATCCAGTTTTATCGTTAGATACGGTACTTGAAAAAGAACCTCCGGCGATT
GCAGTACCTATATCAACTATATCACTCAACGAATCAACATCGTTACTAAA
TCGACGTTCTAGAGTTTGTTGAACGTCGATTGTAGAGTCTTGCTGTTGGT
TTTGGGTGGTAGAGCTGAATTGATCAGACGACATTTGGTTAGGAATAGTT
CCCTGGGAAATTTGTGTCGAATCAAACATGCCATCTTCTTGGGTAGTGTC
CATAGATTGTTGGTCTAAAAGATCCGAATAAAAATCACCGAGTTCGTTAG
CTAAAGCTTGACTGAAAATCGCGTTCGTAGGATCCGCCTTTATGTCTGAT
GTTTTAGTGGTTTGTTGTAAAATGTCAGGGTTGTTTAGAACAGTCTGTTT
TGCTGGTGTACTGTGCGACATGCTACTGCTTTCAGATTTAAGATGAGAAG
ATGTTGCATTCTGGTTGTAATTTGTAGGACTTTCTCTAGCTGTACGCTTT
GAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAACAAGGATTTCTT
TCGAAGTTGATCATTTGGAAGTTCGCCACTGTCCTTACGCCCTTCAATTG
GGCGGTCGCTATCATTCGATAATCTTCCGTTCGGTAAAATACCATCACTG
CTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTATTGTACAATAAC
ACTACTATTTCCAGAGCAAAGCGGTGATTCCAGGGATTCAGGGGTCACGG
GTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTTTctgttcattt
ttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGGACCATGAAGTG
GACCTCATGAGACCGACATTTGGGTCGTTCATGTTGATACTGGACCACTG
GGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTAAAGAACAACAA
TAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAAGTAGAAAAGAA
GGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAAAATCCAGATAA
TTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTCTCCCCTAGGGC
TGCACTGGTAAGAAACCCCTCAGTTATGCATAACAAGCGCCCCATGCTGA
ACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACCCCTTTCATATT
GTACCCTTTATCAAACACACAGACAACTTACTTACTCACTTACTTGGTAC
TGTCTAAATAACACAGTGCTCAAATATACTAGTTTGagtaaaaaaaaacg
atttataagttaatttcatactcaaagtttgATGCCATCTaggatggcaa
tcttcagtgaaatcaCTCAGCGATCAAATatatagtagttttgaaaaggA
TATGGGTAGTTGGAAAAGGACTTTTCGCGATGTAAGAAGAGAGAACGCAT
AAAGTAGAAACATTGATTGaagaatgaaacaaaaaacgGCGAAATGAAGG
AGATTCGATGAAAAGTTATACTGCAAAAGAATCATCGTCTAAAAGCTGAA
AAGCTAGAAAAATATCACGCCGGAAAGATTCATGGCCTTTATACTTACGA
CTTTAGCCTGAAAACACTTTCACTTTTAAGAACCCATGTTAAGTAATGGG
GTCTTAAAAGGGGAGAAAGTATTTATCATAAAACTTTCTAGATATTTTAT
GTTAACTTTGTTTATAACATCAACCTATAAGATAAAGGGAAGAGTCAGGA
TTAAAAGAGTGTACAAGTTGAACTTTACAGCTAAATATAGCCAaatatag
aaaatttgaatgttgTATTTCAACTTCGCCAATAATGGAATGGAATGGCT
AACCTGTTCATCTTGAGAGAACGAAGTGAAAACAAAATCCCAAATATTCA
AGGCTTGActatatttcaataaaaagtatcgaatgaaaaatcgaggaaaa
atcgagaaatattcgataaaagatcgaagcaaaatcgattttgtaaaaat
taagtATACTAACCGTTTTTTGAAACGATAAACAAATCGTTTAGAAGGTG
AAAACTTTTCCCAATATCGCGCGCCTTTACAACATTTTACTAAAGTTATC
GATTTCACAATactaatcttttttattttaaagtttttgaatctGTTGGG
AtaactattttttgaaatttgaaaattttctctagTCTATATATACAGAA
AACAAAGTCTCAGAAAATTTCGGAACCGAAGGTTAAttattctcaaaaat
atttacagtACTTTTTTCTGTGAAGATTTGTTTCaagaagaaaacaattt
tttcagcTCTGGGTTTTCTTCGAATCAGCACATTTAAAAAGTACTGTTCT
AGTTTTGACAGTAGAATGTTGTCTTTGTGTTTTCATAGGATGCAAAAAAA
CAGCTAACTGGTTTAATAGCAGCTTGCATCCTATTTTTAAAAGACTGGAA
GTCCCCTTTCTCAAGAAGTCAGGTTTTGCACACTTATGCTTAGCTTGACT
TCTacaagaaagtttttttcaaaagcaatGGTAGTACCAGGACAAAACAA
GCAAGTTCAAGGTTTCGGACAGAATATTAAAGAGCATTGGTGAAGATGCA
CCAAGCACCAAAgcaattttactcaattttgcCTTGAATATTACTGTCAG
TAATCTTGAATGCTGGGAATATTGAAT
Run BLAST on NCBI

transcript from alignment at sc0000001:2445250..2449787+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000125 ID=TCONS_00000125|Name=TCONS_00000125|organism=Clytia hemisphaerica|type=transcript|length=4538bp|location=Sequence derived from alignment at sc0000001:2445250..2449787+ (Clytia hemisphaerica)
ttttcagaaacttgattaagacgttgtaaatcaaaattgtcattttgaaa atttctaaattttcagtttggactttgcatcatcgaaaatcttgaaatac tttataaaaatcataaattttacatccatcgggtcgtaaatttaagggaa aacacaaatatgttcatagttccccctattaccactaggcttaataattt aattttaactacacctacgttttgggggccccaaaccaccgttttgacaa ccaggggtatactgtaaaaattttatcaaacaaatttatgcccaaaaccc tctaaatcacatttcaaaactatggtcaaaattttgtattcatatcttaa agatatctcgagaagtcgctaaaattgcaaacctccgtttttggggccat tagaaaaaagctatctttaagcgatttaaaaatattgttgaaattgaaaa ttttgaaaaagaacttccaggaaataaagtagagatgttaaagcttttca tgcagcaaaaatttttgtaaaaccttttttcctctagatttgagagacat ttcaaatttgattgacgttttgggggccacatactgtagaaCGCTATACC TTTACCTCTACTATTTATGTCATATTGATTCTCATTCTGTTTTGAGACTC TCTACAGTAAATTTCTGAGTCGAAATCAGAATTAATCTCTTCCAGTTCCC GTTCAAACAAAGAGCGACCAGTTTATGCGATTTATTATACACGTGACATA CACACATAACTGTGTTACCGGTAGATATTCGATTCAATTCTTAACTCATC ACCCGTTTAAAATTTCTTCTAATTCCTCGTCAGACAGTTTGACGTCCGAA TACGCTCCAGAATAACTGTTCGTCGACATGGTGATTGCAAAATCGACCTT GGGTTCGTCCTCGGTTGGTGACTTAATTTCACCAAAATCAGTATTTATAT CCATTGGTGTTACATGCGACCCACTTGAAGAGGTATCATTCGTTTCAGTC TTATTAAACATCTGTAAATTGACAGAAGAAGCTTGGAAAACTCCTTTGAT ATCTTCCTCTTCCTCCATAAGTCTTTTCAAAGGGTTTCCATAATCTTTAA ATCCAGTTTTATCGTTAGATACGGTACTTGAAAAAGAACCTCCGGCGATT GCAGTACCTATATCAACTATATCACTCAACGAATCAACATCGTTACTAAA TCGACGTTCTAGAGTTTGTTGAACGTCGATTGTAGAGTCTTGCTGTTGGT TTTGGGTGGTAGAGCTGAATTGATCAGACGACATTTGGTTAGGAATAGTT CCCTGGGAAATTTGTGTCGAATCAAACATGCCATCTTCTTGGGTAGTGTC CATAGATTGTTGGTCTAAAAGATCCGAATAAAAATCACCGAGTTCGTTAG CTAAAGCTTGACTGAAAATCGCGTTCGTAGGATCCGCCTTTATGTCTGAT GTTTTAGTGGTTTGTTGTAAAATGTCAGGGTTGTTTAGAACAGTCTGTTT TGCTGGTGTACTGTGCGACATGCTACTGCTTTCAGATTTAAGATGAGAAG ATGTTGCATTCTGGTTGTAATTTGTAGGACTTTCTCTAGCTGTACGCTTT GAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAACAAGGATTTCTT TCGAAGTTGATCATCTGGAAGATCGCGATTATCCTTACGCCCTTCGCTTG GGCGGTCGCTATCATTCAATAATCTTCCGTTCGGTAAAATACCATCACTG CTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTATTGTACAATAAC ACTACTATTACCAGAGCAAAGCGGTGATTCCAGGGATTCAGGGGTCACGG GTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTTTctgttcattt ttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGGACCATGAAGTG GACCTCATGAGACCGACATGTGGGTCGTTCATGTTGATACTGGACCACTG GGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTAAAGAACAACAA TAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAAGTAGAAAAGAA GGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAAAATCCAGATAA TTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTCTCTCCTAGGGC TGCACTGGTAAAGAAACCCCTCAGTTATGCATAACAAGCGCCCCATGCTG AACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACCCCTTTCATAT TGTACCCTTTATCAAACACACAGACAACTTACTTACTCACTTACTTGGTA CTGNTTGCTTTGAACGTGCTGTAAACGGCTTGTAATAAGGTACGTGCAAC AAGGATTTCTTTCGAAGTTGATCATTTGGAAGTTCGCCACTGTCCTTACG CCCTTCAATTGGGCGGTCGCTATCATTCGATAATCTTCCGTTCGGTAAAA TACCATCACTGCTACAAAGCGAGGTTTTGCGACTCGATTGCCCAGAGTAT TGTACAATAACACTACTATTTCCAGAGCAAAGCGGTGATTCCAGGGATTC AGGGGTCACGGGTGCGCTTTCGGATCCAGTTTGCTCGGAGCTAAGATTTT TctgttcatttttctttatcgCTTCCTCAAGTGTTGAAACTTTCTCCAGG ACCATGAAGTGGACCTCATGAGACCGACATTTGGGTCGTTCATGTTGATA CTGGACCACTGGGTGTTTTAAATCATCAGCTTCTATCCATAATTTATCTA AAGAACAACAATAAGAGCAAATATTATTCCCTGGCAGTATAAATGAGAAA GTAGAAAAGAAGGGAAACCAAAACAACAGATGAATTCTATCGAACGTGAA AATCCAGATAATTAAAGTAACACAATAATAGTAGAGCAGTCCTATTATTC TCCCCTAGGGCTGCACTGGTAAGAAACCCCTCAGTTATGCATAACAAGCG CCCCATGCTGAACCCCCCTACACAAAAATTCTCCCCTAATAACCCTTACC CCTTTCATATTGTACCCTTTATCAAACACACAGACAACTTACTTACTCAC TTACTTGGTACTGTCTAAATAACACAGTGCTCAAATATACTAGTTTGagt aaaaaaaaacgatttataagttaatttcatactcaaagtttgATGCCATC TaggatggcaatcttcagtgaaatcaCTCAGCGATCAAATatatagtagt tttgaaaaggATATGGGTAGTTGGAAAAGGACTTTTCGCGATGTAAGAAG AGAGAACGCATAAAGTAGAAACATTGATTGaagaatgaaacaaaaaacgG CGAAATGAAGGAGATTCGATGAAAAGTTATACTGCAAAAGAATCATCGTC TAAAAGCTGAAAAGCTAGAAAAATATCACGCCGGAAAGATTCATGGCCTT TATACTTACGACTTTAGCCTGAAAACACTTTCACTTTTAAGAACCCATGT TAAGTAATGGGGTCTTAAAAGGGGAGAAAGTATTTATCATAAAACTTTCT AGATATTTTATGTTAACTTTGTTTATAACATCAACCTATAAGATAAAGGG AAGAGTCAGGATTAAAAGAGTGTACAAGTTGAACTTTACAGCTAAATATA GCCAaatatagaaaatttgaatgttgTATTTCAACTTCGCCAATAATGGA ATGGAATGGCTAACCTGTTCATCTTGAGAGAACGAAGTGAAAACAAAATC CCAAATATTCAAGGCTTGActatatttcaataaaaagtatcgaatgaaaa atcgaggaaaaatcgagaaatattcgataaaagatcgaagcaaaatcgat tttgtaaaaattaagtATACTAACCGTTTTTTGAAACGATAAACAAATCG TTTAGAAGGTGAAAACTTTTCCCAATATCGCGCGCCTTTACAACATTTTA CTAAAGTTATCGATTTCACAATactaatcttttttattttaaagtttttg aatctGTTGGGAtaactattttttgaaatttgaaaattttctctagTCTA TATATACAGAAAACAAAGTCTCAGAAAATTTCGGAACCGAAGGTTAAtta ttctcaaaaatatttacagtACTTTTTTCTGTGAAGATTTGTTTCaagaa gaaaacaattttttcagcTCTGGGTTTTCTTCGAATCAGCACATTTAAAA AGTACTGTTCTAGTTTTGACAGTAGAATGTTGTCTTTGTGTTTTCATAGG ATGCAAAAAAACAGCTAACTGGTTTAATAGCAGCTTGCATCCTATTTTTA AAAGACTGGAAGTCCCCTTTCTCAAGAAGTCAGGTTTTGCACACTTATGC TTAGCTTGACTTCTacaagaaagtttttttcaaaagcaatGGTAGTACCA GGACAAAACAAGCAAGTTCAAGGTTTCGGACAGAATATTAAAGAGCATTG GTGAAGATGCACCAAGCACCAAAgcaattttactcaattttgcCTTGAAT ATTACTGTCAGTAATCTTGAATGCTGGGAATATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000067XLOC_000067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000125-exon-sc0000001-1491911889:2445250..2446877TCONS_00000125-exon-sc0000001-1491911889:2445250..2446877Clytia hemisphaericaexon
TCONS_00000125-exon-sc0000001-1510915933:2445250..2446877TCONS_00000125-exon-sc0000001-1510915933:2445250..2446877Clytia hemisphaericaexon
TCONS_00000125-exon-sc0000001-1575043694:2445250..2446877TCONS_00000125-exon-sc0000001-1575043694:2445250..2446877Clytia hemisphaericaexon
TCONS_00000125-exon-sc0000001-1491911889:2447639..2449787TCONS_00000125-exon-sc0000001-1491911889:2447639..2449787Clytia hemisphaericaexon
TCONS_00000125-exon-sc0000001-1510915933:2447639..2449787TCONS_00000125-exon-sc0000001-1510915933:2447639..2449787Clytia hemisphaericaexon
TCONS_00000125-exon-sc0000001-1575043694:2447639..2449787TCONS_00000125-exon-sc0000001-1575043694:2447639..2449787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2445250..2449787 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.725529 0.50425 1.19586 1.15127 5.48585 2.14785 2.75132 4.12846 2.98486 2.33797 2.82382 2.18948 4.69447 4.06112 2.53776 1.46073 2.80346 2.1214 2.09607 2.65538 5.94018 4.9978 2.58254 3.12782 2.75905 4.03862 5.78263 3.88205 2.92983 4.0919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php