TCONS_00000117 (transcript) - C. hemisphaerica

Overview
Name
Unique NameTCONS_00000117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000117 ID=TCONS_00000117|Name=|organism=Clytia hemisphaerica|type=transcript|length=907bp
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC
AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG
ACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAACACATCATT
GAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTC
TGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGAT
GGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAA
TTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGTAA
GCTTTTTTTTCAACCTCGTTTATAAGCGCTAAAATANTCATTTGTTCCAG
CTGAAGTGACCTTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAA
TACCAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATG
GACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACG
AGAGCAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGT
TTTGGATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGT
CGGGAATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAATTC
ATCATTAGAATCTTCTCATGTTCTGTATTGATTTATTTACATACATTATA
AATTTCaagcaagaaaatttttgaaaatttctttaaatgtCTTTTTGTTT
TAATATACCACACTttgtgaaattttatttttacgaTATTGTTGAAAATA
CAACCAAAATAtcgacaaaaaatatttttcattaaatatcTGCATCAAAT
AAGATTG
Run BLAST on NCBI

transcript from alignment at sc0000001:2202531..2206120+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000117 ID=TCONS_00000117|Name=TCONS_00000117|organism=Clytia hemisphaerica|type=transcript|length=3590bp|location=Sequence derived from alignment at sc0000001:2202531..2206120+ (Clytia hemisphaerica)
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG ACAAATTCAACGAAAAACACAACTGTAAGATTTGCGTTATTGGACTTTTC CTAATTTCCTACCCATTCATTCTTTTGGTCGGTTGAATGACCGAGAGGTG TCATTTGGGCTCAGTACAAAATTGTAGTTATATCCCTTGACTGCTAAAAA TACCTTTACAAAGGCCTACGGGGTATCCAAAAACTACTTTTCGGGGTAAC CATTGAAGCCCGGGGTACTCTAGGTGATGCGAGGCCCTCTAGGGTATGTT TTTCAGCCTTCTCAAAGTGAAATCTAAAGGGccaaaagtacccaaaaagc gCAATGTTAGGGTGTAAAGTGAGATAAACGATGTTTTTTGGGTTAACTTT AATCAATCAAACGAGGTGAATAATATAATAGAGGGATCCAATTTTGAGAC CCTAATTCTGTCCGTTCAGATCGAATGCCCTTGGGAATAAATAGCTCTTG TATAAGAATAAGAATGAAGACATTGAATGAAGTGAATACAATCGGgctca tgttgtcttctgaccagccaccagaaccgttggaaaaccaacggatccgg cgaaactcgaactcacaaccatgctATTCGCAGACATTTGCTCTATCATT GAGCTACGGATCCCATATACCAATATATCAACATTCTTATCTTTTTAATC AGCTGTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTG GAACAGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAA GGATTCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGG TCATATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAG CTGAAGTGACATTCAGATCCAACGGTAAGCTTTTTTTTCAACCTCGTTTA TAAGCGCTAAAATANTCATTTGTTCCAGCTGAAGTGACCTTCAGATCCAA CGGTGAGctttttacaataaaatttgCCTTTATTGTATTCATATAACAAA CAGTCTAGGAAACATAAAAACCCATCCACAATAAAttataaaaacgaaag tggtctcttctaccaTGAAAAATTCTAGAATGTGTAAGAACGAAGCTATA GCTATAGCAGCTATAGCCTAAAACTGAGTTTGTTTTCATCTTCAGAGATA AGTGCTCAATGTTCTTATCTAAGACACAAAGTCTTATTATGATAAGACTT ATATGATAAGGGGTGGACACTCAAGGTGAAAGGCCTACCGTACGTGCAAC CCTTAAGGATCCTCTTTCTAAGCTTTCTAAAGCGAACTGTAAGGGTCAAA ATGAGCAAAGCTGCgaaaaagtgcactctaagggtgtaaaatttggaaaa tgtgACATGTCATACTTTGCCTTAAAATGCTCAAAATTTTTAGAGAAATT GAATcaataagggtcgattttttgtTCAAGTTTACTCAAATATTACTACA ATGAAGTGAATAGagtcgctctcatgttgtcttctgaccagccaccagaa cgcgttggaaaaccaacggatccggcgaaactcaaactcacaaccatgcc attcgcgggTATTTGCTCTACCATTAAGCTAcggtaataataataataca atATTCATGATCAAATTTtactaaattttctctgcactgtaagggtttaa TTTCAAAGGCATAACTTTAGGCCATACAATCAGTCGTTTTTAAATAGAGT GATAGACTACCAAAGTCTTTTCTATCACTTTTTAAGGAAATGTCAACGAG ATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACCACTGCAATGA ATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCA AATACAGGTACGAGCAATATAATATGATAACAAAAGGCTAAAAGTGATTT TCAGTCTTTCCAAGGCAGGAGAAAGTGAATTTGTTCATTATTCTATATAT TTAATTTAATATGATCTCAAAGGGCTAAAAGTGattctttaatttttcca agGCAGAAGAAAgtgaatttcttcattttctgaaaagcTTCCCTGCTCCT CTTTTTGGATTTAAGAATCATTTAACAATAAATTGAGAGTGCAATTAAAA AACCGATAGCATTGTTTTAGTGCATTGATGCTTTTCCCATCAGTAAGGGA TTCCAAcgcagctggcacacaacgttgttttaacgttcaaataacgttat ttgaacgttatgaatgtcacatggacgttgttttgacgttgtgtgccgtc tggaAGGGGTCTGTGATAAGCGAGTGTTAATCATTTCCGGATGTACAATT GTTATACAGTGAGCTCTTGccaattcgaacttctattatttgaatcattc tataattcgaaataATTCGTAAATCCGCCATCAAAGGGAAACGTAAAAAT GCTTTCTTTAATTTGAATCCTTcgttaattcgaacaaattacaCTTCCGG TTCGACTTCTAATaaactattattatccatataatatcattaagtaagcc attaaagataCCGGTTACtctttcgaagcgggctacacggctttttgcgc aatgcaattggttcttttcgcatgacgacgagcctacattgtccagagtt gcccgtcgttaggaaaattcattgtgacgtcactttttcaaaggaaaacg aGCAATGcgtgacatcatttctctcatttttttcaatattgccctcggtc aacgcaacaacctcgcaaactcggtcgttacttgacctcgggcaatattt ctcagtacataGCCCTCataaaccggtcattattgtattattgttaaccg gttactttttcgaagcgggctacacgactttttgtgtaatgcaattggtt cttttcgcatgacgacgggcctacactggccagagttgcccgtcgttagg aaaattcattgtgacgtcactttttcaaaggaaaataaaCAANTACACTg gccagagttgcccgtcgttaggaaaattcattgtgacgtcactttttcaa aggaaaatgaacaatgcgtcctcgcaagctcggtcgttacttgacctcgg gcaatatttctcagtacagccctcataaaccggtcattattgtattagag tTATACTGTAATATTATTCACTTTACAGATACGAGAGCAAAAGATGTGCT GTCAGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTT GAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCT TTAAAAGATACGATTCTGCTCATATGTAAATTCATCATTAGAATCTTCTC ATGTTCTGTATTGATTTATTTACATACATTATAAATTTCaagcaagaaaa tttttgaaaatttctttaaatgtCTTTTTGTTTTAATATACCACACTttg tgaaattttatttttacgaTATTGTTGAAAATACAACCAAAATAtcgaca aaaaatatttttcattaaatatcTGCATCAAATAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000063XLOC_000063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000117-exon-sc0000001-1491911889:2202531..2202654TCONS_00000117-exon-sc0000001-1491911889:2202531..2202654Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1510915933:2202531..2202654TCONS_00000117-exon-sc0000001-1510915933:2202531..2202654Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1575043694:2202531..2202654TCONS_00000117-exon-sc0000001-1575043694:2202531..2202654Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1491911889:2203283..2203582TCONS_00000117-exon-sc0000001-1491911889:2203283..2203582Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1510915933:2203283..2203582TCONS_00000117-exon-sc0000001-1510915933:2203283..2203582Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1575043694:2203283..2203582TCONS_00000117-exon-sc0000001-1575043694:2203283..2203582Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1491911889:2204367..2204487TCONS_00000117-exon-sc0000001-1491911889:2204367..2204487Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1510915933:2204367..2204487TCONS_00000117-exon-sc0000001-1510915933:2204367..2204487Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1575043694:2204367..2204487TCONS_00000117-exon-sc0000001-1575043694:2204367..2204487Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1491911889:2205759..2206120TCONS_00000117-exon-sc0000001-1491911889:2205759..2206120Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1510915933:2205759..2206120TCONS_00000117-exon-sc0000001-1510915933:2205759..2206120Clytia hemisphaericaexon
TCONS_00000117-exon-sc0000001-1575043694:2205759..2206120TCONS_00000117-exon-sc0000001-1575043694:2205759..2206120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2202531..2206120 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.669391 0.50294 0 0 0.137088 0 0.457429 0 0.0856631 0 0 0 39.6703 40.7302 0.123538 0.282661 3.57458 2.64538 325.836 347.476 24.0382 21.1734 3.03287 5.0191 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php