TCONS_00000116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000116
Unique NameTCONS_00000116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=transcript|length=854bp
GGCATTTTGTAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTG
TACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCA
CCAGGTGCAGATGATAATGACCATGACAAATTCAACGAAAAACACAACTC
TGTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAA
CAGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGA
TTCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCA
TATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTG
AAGTGACATTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATAC
CAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGAC
CATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGA
GCAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTT
GGATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGG
GAATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAATTCATC
ATTAGAATCTTCTCATGTTCTGTATTGATTTATTTACATACATTATAAAT
TTCaagcaagaaaatttttgaaaatttctttaaatgtCTTTTTGTTTTAA
TATACCACACTttgtgaaattttatttttacgaTATTGTTGAAAATACAA
CCAAAATAtcgacaaaaaatatttttcattaaatatcTGCATCAAATAAG
ATTG
Run BLAST on NCBI

protein sequence of TCONS_00000116-protein

>TCONS_00000116-protein ID=TCONS_00000116-protein|Name=TCONS_00000116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
AFCSSLKSLTMKTLTVVLLLGIVAAIQCHAVSSPGADDNDHDKFNEKHNS
VDHHQHIIEEVHTERGTAGATSEYSATYMAEKGFQKNYAYGWKTKNNYGH
MPEMIWYKFREPFVPAEVTFRSNGNVNEMPTKYQFVGSNDHHCNEYSPWT
ILCEDLSGDVVKYRYESKRCAVSHYHQATYFCFGLRVLNTKGNTAYAGVG
NVRFFKRYDSAHM
Run BLAST on NCBI

transcript from alignment at sc0000001:2202192..2206120+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0000001:2202192..2206120+ (Clytia hemisphaerica)
GGCATTTTGTAGTTcattgaaaaggtaaaatattttGTCCTAATATTCCt tatcaattttgaaaattgaaactttccaGGTGAAGATGTGGGATGCATTC TTTGCCCATAGTATAGACAAAGCGGTGACAAAATACCGGAAAGCGGTGAA TACTTCATGAAATACCGGCGTACTGGACAGAAAATTCTCAGATTCTGTTC AAAAGTCTTTTTAACAAGTTCTGGAATACCATTTTCCCGTCAAATACCGA AATGAGGATTATACCGAAATCTTGGAAGTCCCCCTGTGTAGATCAAAGAT AAAAAGGGATATTATCTTCGTATGTATTTCATTTGCAGTTTAACAATGAA GACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTC ACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATGACAAATTCAAC GAAAAACACAACTGTAAGATTTGCGTTATTGGACTTTTCCTAATTTCCTA CCCATTCATTCTTTTGGTCGGTTGAATGACCGAGAGGTGTCATTTGGGCT CAGTACAAAATTGTAGTTATATCCCTTGACTGCTAAAAATACCTTTACAA AGGCCTACGGGGTATCCAAAAACTACTTTTCGGGGTAACCATTGAAGCCC GGGGTACTCTAGGTGATGCGAGGCCCTCTAGGGTATGTTTTTCAGCCTTC TCAAAGTGAAATCTAAAGGGccaaaagtacccaaaaagcgCAATGTTAGG GTGTAAAGTGAGATAAACGATGTTTTTTGGGTTAACTTTAATCAATCAAA CGAGGTGAATAATATAATAGAGGGATCCAATTTTGAGACCCTAATTCTGT CCGTTCAGATCGAATGCCCTTGGGAATAAATAGCTCTTGTATAAGAATAA GAATGAAGACATTGAATGAAGTGAATACAATCGGgctcatgttgtcttct gaccagccaccagaaccgttggaaaaccaacggatccggcgaaactcgaa ctcacaaccatgctATTCGCAGACATTTGCTCTATCATTGAGCTACGGAT CCCATATACCAATATATCAACATTCTTATCTTTTTAATCAGCTGTTGATC ATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGT GCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAA GAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAG AAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACA TTCAGATCCAACGGTAAGCTTTTTTTTCAACCTCGTTTATAAGCGCTAAA ATANTCATTTGTTCCAGCTGAAGTGACCTTCAGATCCAACGGTGAGcttt ttacaataaaatttgCCTTTATTGTATTCATATAACAAACAGTCTAGGAA ACATAAAAACCCATCCACAATAAAttataaaaacgaaagtggtctcttct accaTGAAAAATTCTAGAATGTGTAAGAACGAAGCTATAGCTATAGCAGC TATAGCCTAAAACTGAGTTTGTTTTCATCTTCAGAGATAAGTGCTCAATG TTCTTATCTAAGACACAAAGTCTTATTATGATAAGACTTATATGATAAGG GGTGGACACTCAAGGTGAAAGGCCTACCGTACGTGCAACCCTTAAGGATC CTCTTTCTAAGCTTTCTAAAGCGAACTGTAAGGGTCAAAATGAGCAAAGC TGCgaaaaagtgcactctaagggtgtaaaatttggaaaatgtgACATGTC ATACTTTGCCTTAAAATGCTCAAAATTTTTAGAGAAATTGAATcaataag ggtcgattttttgtTCAAGTTTACTCAAATATTACTACAATGAAGTGAAT AGagtcgctctcatgttgtcttctgaccagccaccagaacgcgttggaaa accaacggatccggcgaaactcaaactcacaaccatgccattcgcgggTA TTTGCTCTACCATTAAGCTAcggtaataataataatacaatATTCATGAT CAAATTTtactaaattttctctgcactgtaagggtttaaTTTCAAAGGCA TAACTTTAGGCCATACAATCAGTCGTTTTTAAATAGAGTGATAGACTACC AAAGTCTTTTCTATCACTTTTTAAGGAAATGTCAACGAGATGCCGACCAA ATACCAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCAT GGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGGTAC GAGCAATATAATATGATAACAAAAGGCTAAAAGTGATTTTCAGTCTTTCC AAGGCAGGAGAAAGTGAATTTGTTCATTATTCTATATATTTAATTTAATA TGATCTCAAAGGGCTAAAAGTGattctttaatttttccaagGCAGAAGAA AgtgaatttcttcattttctgaaaagcTTCCCTGCTCCTCTTTTTGGATT TAAGAATCATTTAACAATAAATTGAGAGTGCAATTAAAAAACCGATAGCA TTGTTTTAGTGCATTGATGCTTTTCCCATCAGTAAGGGATTCCAAcgcag ctggcacacaacgttgttttaacgttcaaataacgttatttgaacgttat gaatgtcacatggacgttgttttgacgttgtgtgccgtctggaAGGGGTC TGTGATAAGCGAGTGTTAATCATTTCCGGATGTACAATTGTTATACAGTG AGCTCTTGccaattcgaacttctattatttgaatcattctataattcgaa ataATTCGTAAATCCGCCATCAAAGGGAAACGTAAAAATGCTTTCTTTAA TTTGAATCCTTcgttaattcgaacaaattacaCTTCCGGTTCGACTTCTA ATaaactattattatccatataatatcattaagtaagccattaaagataC CGGTTACtctttcgaagcgggctacacggctttttgcgcaatgcaattgg ttcttttcgcatgacgacgagcctacattgtccagagttgcccgtcgtta ggaaaattcattgtgacgtcactttttcaaaggaaaacgaGCAATGcgtg acatcatttctctcatttttttcaatattgccctcggtcaacgcaacaac ctcgcaaactcggtcgttacttgacctcgggcaatatttctcagtacata GCCCTCataaaccggtcattattgtattattgttaaccggttactttttc gaagcgggctacacgactttttgtgtaatgcaattggttcttttcgcatg acgacgggcctacactggccagagttgcccgtcgttaggaaaattcattg tgacgtcactttttcaaaggaaaataaaCAANTACACTggccagagttgc ccgtcgttaggaaaattcattgtgacgtcactttttcaaaggaaaatgaa caatgcgtcctcgcaagctcggtcgttacttgacctcgggcaatatttct cagtacagccctcataaaccggtcattattgtattagagtTATACTGTAA TATTATTCACTTTACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTA CCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAG GCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATAC GATTCTGCTCATATGTAAATTCATCATTAGAATCTTCTCATGTTCTGTAT TGATTTATTTACATACATTATAAATTTCaagcaagaaaatttttgaaaat ttctttaaatgtCTTTTTGTTTTAATATACCACACTttgtgaaattttat ttttacgaTATTGTTGAAAATACAACCAAAATAtcgacaaaaaatatttt tcattaaatatcTGCATCAAATAAGATTG

Coding sequence (CDS) from alignment at sc0000001:2202192..2206120+

>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=CDS|length=3210bp|location=Sequence derived from alignment at sc0000001:2202192..2206120+ (Clytia hemisphaerica)
GCATTTTGTAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTGT
ACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCAC
CAGGTGCAGATGATAATGACCATGACAAATTCAACGAAAAACACAACTCT
GTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAAC
AGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGAT
TCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCAT
ATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGA
AGTGACATTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATACC
AATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGACC
ATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGAG
CAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTTG
GATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGG
AATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAGCATTTTG
TAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTGTACTCCTTT
TGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCACCAGGTGCA
GATGATAATGACCATGACAAATTCAACGAAAAACACAACTCTGTTGATCA
TCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGTG
CGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAAG
AACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAGA
AATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACAT
TCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATACCAATTCGTT
GGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGACCATCTTGTG
CGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGAGCAAAAGAT
GTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGA
GTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAG
ATTCTTTAAAAGATACGATTCTGCTCATATGTAAGCATTTTGTAGTTcat
tgaaaagTTTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATC
GTTGCTGCAATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAA
TGACCATGACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAAC
ACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCA
GAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGC
TTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTT
GGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCC
AACGGAAATGTCAACGAGATGCCGACCAAATACCAATTCGTTGGTTCCAA
CGATCACCACTGCAATGAATATTCTCCATGGACCATCTTGTGCGAAGACT
TGTCTGGAGATGTAGTCAAATACAGATACGAGAGCAAAAGATGTGCTGTC
AGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAA
CACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTA
AAAGATACGATTCTGCTCATATGTAAGCATTTTGTAGTTcattgaaaagT
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC
AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG
ACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAACACATCATT
GAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTC
TGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGAT
GGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAA
TTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGAAA
TGTCAACGAGATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACC
ACTGCAATGAATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGA
GATGTAGTCAAATACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTA
CCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAG
GCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATAC
GATTCTGCTCATATGTAAGCATTTTGTAGTTcattgaaaagTTTAACAAT
GAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGCAATTCAAT
GTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATGACAAATTC
AACGAAAAACACAACTCTGTTGATCATCACCAACACATCATTGAAGAAGT
ACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTCTGCTACTT
ACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGATGGAAAACA
AAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAATTCCGTGA
ACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGAAATGTCAACG
AGATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACCACTGCAAT
GAATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGT
CAAATACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTACCACCAGG
CTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAGGCAACACT
GCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATACGATTCTGC
TCATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000063XLOC_000063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000116-exon-sc0000001-1491911889:2202192..2202215TCONS_00000116-exon-sc0000001-1491911889:2202192..2202215Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1510915933:2202192..2202215TCONS_00000116-exon-sc0000001-1510915933:2202192..2202215Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1491911889:2202530..2202654TCONS_00000116-exon-sc0000001-1491911889:2202530..2202654Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1510915933:2202530..2202654TCONS_00000116-exon-sc0000001-1510915933:2202530..2202654Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1491911889:2203283..2203504TCONS_00000116-exon-sc0000001-1491911889:2203283..2203504Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1510915933:2203283..2203504TCONS_00000116-exon-sc0000001-1510915933:2203283..2203504Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1491911889:2204367..2204487TCONS_00000116-exon-sc0000001-1491911889:2204367..2204487Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1510915933:2204367..2204487TCONS_00000116-exon-sc0000001-1510915933:2204367..2204487Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1491911889:2205759..2206120TCONS_00000116-exon-sc0000001-1491911889:2205759..2206120Clytia hemisphaericaexon
TCONS_00000116-exon-sc0000001-1510915933:2205759..2206120TCONS_00000116-exon-sc0000001-1510915933:2205759..2206120Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000116-proteinTCONS_00000116-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2202192..2206120 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68587 2.19126 2.42887 2.4372 0 0.175845 0 0.198612 0 0.114826 0.278633 0.109898 459.701 383.162 0.366043 0.196883 9.6753 7.54857 1269.95 1416.28 142.358 139.652 12.7369 22.0328 48.3075 45.6432 0.0754217 0.0804921 0.305252 0.186602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php