TCONS_00000115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000115
Unique NameTCONS_00000115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000115 ID=TCONS_00000115|Name=TCONS_00000115|organism=Clytia hemisphaerica|type=transcript|length=878bp
aacacaaaaaattaccaaatTAGTAAAGATTCGATTCATTGTAATTAAGA
AAAGTCTCCTTTGTTTTAGAAATTTTCGAGGCAGAGCTATTGGCCATAGC
TTAAAAGTTACACGGcaatttttctttcgaaaacACAACACAAGAAGTAG
TGTCCTCGTAAGAGCTAAGGTTTTAAATCAAGATCTATCTTGTCTCTAAA
ACAACCTACTTCATTTAAAATGGCTGAAACATCAACTTCTGAATTAGCCT
GTGTCTACAGTGCACTTATTTTACACGACGATGATGTCGATATCACGGCT
GACAAAATCCAAAAGATCTGTACTGCTGCCAATGTCACTGTTGAGCCATT
CTGGCCAGGACTCTTTGCAAAAGCCCTTGAAGGACGTAACATCGGAGACT
TAATTAGCAATGTTGGATCTGCCCCTGCCGCTGGTGCTGCTGCTCCAGCT
GCTGGAGGAGATGCCCCAGCTGCTggtgaagaaaagaaagaagagaagaa
GGAAGAATCTGAAGAATCTGACGATGATATGGGATTCGgtttGTTTGACT
AAAGAATTGCCAATCATtacacagaaaaaaaattgtaaaattgaatTATA
CAATTGTCTCATTTCTTTGACATGGCTATCCCGTTATCTTAACTTGACCA
GTTAGTTGGTATAGATAACCCAggaatttcttattttattggCTGAGTTA
CCTAAAAAATTGGGTTGTTCAGcgaaaaataaaagtaaaatgacATCATA
AGgtcttaaaaaatagaaaataaaaggGTCCAgttcatgaaaatgaaaat
ttctcaagattggcttggtattcatttcttattttttacacagtgatata
aaatggtactatttaatttctgatggag
Run BLAST on NCBI

protein sequence of TCONS_00000115-protein

>TCONS_00000115-protein ID=TCONS_00000115-protein|Name=TCONS_00000115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MAETSTSELACVYSALILHDDDVDITADKIQKICTAANVTVEPFWPGLFA
KALEGRNIGDLISNVGSAPAAGAAAPAAGGDAPAAGEEKKEEKKEESEES
DDDMGFGLFD
Run BLAST on NCBI

transcript from alignment at sc0000001:2191069..2193056+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000115 ID=TCONS_00000115|Name=TCONS_00000115|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at sc0000001:2191069..2193056+ (Clytia hemisphaerica)
aacacaaaaaattaccaaatTAGTAAAGATTCGATTCATTGTAATTAAGA
AAAGTCTCCTTTGTTTTAGAAATTTTCGAGGCAGAGCTATTGGCCATAGC
TTAAAAGTTACACGGcaatttttctttcgaaaacACAACACAAGAAGTAG
TGTCCTCGTAAGAGCTAAGGTTTTAAATCAAGATCTATCTTGTCTCTAAA
ACAACCTACTTCATTTAAAATGGCTGAAACATCAACTTCTGAATTAGCCT
GTGTCTACAGTGCACTTATTTTACACGACGATGATGTCGATATCACGGTA
AGTTAAATTGAACATCACCAATACTTGGTCTCCATATTGCTTTAGATCTC
TATATAATTTGCAAGGAGATATGATTATAAACTTCTATACTTCTATACTT
CAGGCTGACAAAATCCAAAAGATCTGTACTGCTGCCAATGTCACTGTTGA
GCCATTCTGGCCAGGACTCTTTGCAAAAGCCCTTGAAGGACGTAACATCG
GAGACTTAATTAGCAATGTTGGATCTGCCCCTGCCGCTGGTGCTGCTGCT
CCAGCTGCTGGAGGAGGTAAGCTTTATTATGTTCTGACTTAAACACTCAT
TGAGGAATAATGATGTTTTATTACTTGCCAGATTATTATAAACACGATCG
ACCAGATGACTCTCAAAGTAACTTACAATAGGCATTCCTTctgtatttgt
ttttttttactgtcAGGTATGGTACGAGTATAGTCTTTCATGTatttaaa
tttttgacaaaaacatTTCATTGACATAACTAATAAtactgaaaatatga
aaattagcCAGGACCACTCTAATTAATTGCTCTGAATACTTTATTTtata
atgtttaaaaaataccAATTCATTCTTTAACGCAACTTTAGATGCCCCAG
CTGCTggtgaagaaaagaaagaagagaagaaGGAAGAATCTGAAGAATCT
GACGATGATATGGGATTCGGTAAGGTTCCTGTAATTCAACTATTTGTATA
CTTAGCATTGAGGTTTGAACCCTGTCTTTAGTTATCTTCAGAAGTCCATT
TTGCTTGAGTTAAAAGATACAAAGTGGTGCGTGGAATCTTAAAACCCAAA
ctggaaatttaaaaatgagGTTGACATCTCATGACATCTCTTCGTTTGCA
TTTTACTGGCAtgtttgactgaatgattacacattgaaaaattttgataa
gtGGCTTTAACATCCATCAACAAGCAGGTGTGGATCTTCAAAAATAGTTC
CATTACCGTTCACTTTGATGGGATATAAAAGCTCCATTATACCCTGTATT
TGATTTGACTTTATATTGAATTCAGATGTTTGCTGTGAGCTACATGCCTT
AGTGAAAACTCGAGGAAATTTGTCTATTTGTCATGTTATTAAATATTATT
GATATTTTAACAATTCAGTGGCTTTAACATCCATCAACAAGCAGGTGTGG
ATCTTCAAAAATAGTTCCATAACCGTTCACTTTGATGGGATATAAAAGCT
CCATTATACCCTGAATTTGATTTGACTTTATATTGAATTCAGATGTTTGC
TGTGAGCTACATGCCTTAGTGAAAACTCAAGGAAATTTGTCTATTTGTCA
TGTTATTAAATATTATTGATATTTtaacaattcttttttcttttttaggt
ttGTTTGACTAAAGAATTGCCAATCATtacacagaaaaaaaattgtaaaa
ttgaatTATACAATTGTCTCATTTCTTTGACATGGCTATCCCGTTATCTT
AACTTGACCAGTTAGTTGGTATAGATAACCCAggaatttcttattttatt
ggCTGAGTTACCTAAAAAATTGGGTTGTTCAGcgaaaaataaaagtaaaa
tgacATCATAAGgtcttaaaaaatagaaaataaaaggGTCCAgttcatga
aaatgaaaatttctcaagattggcttggtattcatttcttattttttaca
cagtgatataaaatggtactatttaatttctgatggag

Coding sequence (CDS) from alignment at sc0000001:2191069..2193056+

>TCONS_00000115 ID=TCONS_00000115|Name=TCONS_00000115|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000001:2191069..2193056+ (Clytia hemisphaerica)
ATGGCTGAAACATCAACTTCTGAATTAGCCTGTGTCTACAGTGCACTTAT
TTTACACGACGATGATGTCGATATCACGGCTGACAAAATCCAAAAGATCT
GTACTGCTGCCAATGTCACTGTTGAGCCATTCTGGCCAGGACTCTTTGCA
AAAGCCCTTGAAGGACGTAACATCGGAGACTTAATTAGCAATGTTGGATC
TGCCCCTGCCGCTGGTGCTGCTGCTCCAGCTGCTGGAGGAGATGCCCCAG
CTGCTggtgaagaaaagaaagaagagaagaaGGAAGAATCTGAAGAATCT
GACGATGATATGGGATTCGgtttGTTTGACTAAATGGCTGAAACATCAAC
TTCTGAATTAGCCTGTGTCTACAGTGCACTTATTTTACACGACGATGATG
TCGATATCACGGCTGACAAAATCCAAAAGATCTGTACTGCTGCCAATGTC
ACTGTTGAGCCATTCTGGCCAGGACTCTTTGCAAAAGCCCTTGAAGGACG
TAACATCGGAGACTTAATTAGCAATGTTGGATCTGCCCCTGCCGCTGGTG
CTGCTGCTCCAGCTGCTGGAGGAGATGCCCCAGCTGCTggtgaagaaaag
aaagaagagaagaaGGAAGAATCTGAAGAATCTGACGATGATATGGGATT
CGgtttGTTTGACTAAATGGCTGAAACATCAACTTCTGAATTAGCCTGTG
TCTACAGTGCACTTATTTTACACGACGATGATGTCGATATCACGGCTGAC
AAAATCCAAAAGATCTGTACTGCTGCCAATGTCACTGTTGAGCCATTCTG
GCCAGGACTCTTTGCAAAAGCCCTTGAAGGACGTAACATCGGAGACTTAA
TTAGCAATGTTGGATCTGCCCCTGCCGCTGGTGCTGCTGCTCCAGCTGCT
GGAGGAGATGCCCCAGCTGCTggtgaagaaaagaaagaagagaagaaGGA
AGAATCTGAAGAATCTGACGATGATATGGGATTCGgtttGTTTGACTAAA
TGGCTGAAACATCAACTTCTGAATTAGCCTGTGTCTACAGTGCACTTATT
TTACACGACGATGATGTCGATATCACGGCTGACAAAATCCAAAAGATCTG
TACTGCTGCCAATGTCACTGTTGAGCCATTCTGGCCAGGACTCTTTGCAA
AAGCCCTTGAAGGACGTAACATCGGAGACTTAATTAGCAATGTTGGATCT
GCCCCTGCCGCTGGTGCTGCTGCTCCAGCTGCTGGAGGAGATGCCCCAGC
TGCTggtgaagaaaagaaagaagagaagaaGGAAGAATCTGAAGAATCTG
ACGATGATATGGGATTCGgtttGTTTGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000062XLOC_000062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000115-exon-sc0000001-1491911889:2191069..2191365TCONS_00000115-exon-sc0000001-1491911889:2191069..2191365Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1510915933:2191069..2191365TCONS_00000115-exon-sc0000001-1510915933:2191069..2191365Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1575043694:2191069..2191365TCONS_00000115-exon-sc0000001-1575043694:2191069..2191365Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1491911889:2191472..2191634TCONS_00000115-exon-sc0000001-1491911889:2191472..2191634Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1510915933:2191472..2191634TCONS_00000115-exon-sc0000001-1510915933:2191472..2191634Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1575043694:2191472..2191634TCONS_00000115-exon-sc0000001-1575043694:2191472..2191634Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1491911889:2191960..2192037TCONS_00000115-exon-sc0000001-1491911889:2191960..2192037Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1510915933:2191960..2192037TCONS_00000115-exon-sc0000001-1510915933:2191960..2192037Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1575043694:2191960..2192037TCONS_00000115-exon-sc0000001-1575043694:2191960..2192037Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1491911889:2192717..2193056TCONS_00000115-exon-sc0000001-1491911889:2192717..2193056Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1510915933:2192717..2193056TCONS_00000115-exon-sc0000001-1510915933:2192717..2193056Clytia hemisphaericaexon
TCONS_00000115-exon-sc0000001-1575043694:2192717..2193056TCONS_00000115-exon-sc0000001-1575043694:2192717..2193056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000115-proteinTCONS_00000115-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2191069..2193056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2116.41	2108.98	2558.13	2709.75	1721.09	1357.03	2089.64	2270.4	3404.53	3133.62	3645.79	4325.09	5391.05	5050.64	4461.78	4487.93	4282.42	4586.55	2445.58	3000.13	4613.32	4404.75	3335.48	3238.91	2937.72	3124.1	4310.46	4246.13	3277.63	3327.34
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00000115 vs. Swiss-Prot (Human)
Match: RLA1 (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.017e-22
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  232 STSELACVYSALILHDDDVDITADKIQKICTAANVTVEPFWPGLFAKALEGRNIGDLISNV 414
            S SELAC+YSALILHDD+V +T DKI  +  AA V VEPFWPGLFAKAL   NIG LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63
The following BLAST results are available for this feature:
BLAST of TCONS_00000115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RLA18.017e-2270.4960S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
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