TCONS_00000112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000112
Unique NameTCONS_00000112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000112 ID=TCONS_00000112|Name=TCONS_00000112|organism=Clytia hemisphaerica|type=transcript|length=993bp
CCTCAGGATACTTGTCGAGATAGTCAATATCATGCAGACCAAAATTGAAC
AATATTACATCATATTGTGTAGGGCGTAAACTTATTGTGGATAAAAAATA
ATCCAAACATTGACGCCCATAGCTTGAATCCATCGCCGCCCCTGCTTTTG
AAGAGGGCGCCAATTGAACTTGACAACTCCCATTAAGGGCGGCTGCAGCT
GAGTAGCTTTACCCTAAAGCAATTGAATCTCCAATCACAAGACAGTTAGG
TTTCCCTTCAAAATACGTTTTCATAACACCTGGTTTACACACTCGTGAAG
CTTTTATATCACCATCAGGTACAACATTTTGTTGGTTAGTGGAAACCAGC
CCTAATGACTGTTGCTCTTCATGCTTGATCTCTTGGCGATGTTGCGTCTT
GTTTGTAGCCGGTTTGGTCGGCGTCATAGGGCCAGCGGCACTGTTTGATA
ATAGAGAGACCTTGTCATCTGGAGATTTCTCTGAAGCATCTAATTTATCA
ATCAAGTTTTGAATGCTTTTGTctggttttgttttcaaatgttGGTCCTG
TTTTTTGGCCGGTGAGTCGGTCTTCACCTTCTGCTTTGTATTGAACTTAT
TTGCCTCGATTGCtttgcttttgatttttttgtcaacCGTTGGCGATACA
TTTTGCTCTTTCTTTCTCTCAATTGccttatttttgatttttttgctgcT
CGACGAGTCATTTGACTTTGTTTTTGTCTCGATTGCTTTGTTTTCAATCT
TTTTATCAGCAACGGGTGACAACTTTTGTTGCTTCTTTAACTCGCTAGCC
TTGATGTCAACTTTTTTTGTCTCTGTTGTAAAAGTAGgttttttatctgt
tttactACTTTTTGTTACTGCTGGTTTCAGTTTTTCAGTTGTTATTACAG
AAGGATGAGGGATTGGTTGCTGTGAAGTAGCTGTTGTATGTTTCTTCTTG
GCCGTGTTGTGTTCTGGCATCACTTTCTTCTTCTGTATTTTGG
Run BLAST on NCBI

transcript from alignment at sc0000001:2134555..2135889+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000112 ID=TCONS_00000112|Name=TCONS_00000112|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0000001:2134555..2135889+ (Clytia hemisphaerica)
CCTCAGGATACTTGTCGAGATAGTCAATATCATGCAGACCAAAATTGAAC AATATTACATCATATTGTGTAGGGCGTAAACTTATTGTGGATAAAAAATA ATCCAAACATTGACGCCCATAGCTTGAATCCATCGCCGCCCCTGCTTTTG AAGAGGGCGCCAATTGAACTTGACAACTCCCATTAAGGGCGGCTGCAGCT GAGTAGCTATACCTGGAATAGAGATAATGATGAAGTTGATTAGccataat aaaagtttttcttaTATTTGCATACTACTCCACTCTATTTAAATACGACC GTATATGCGGCCTAAAATTAGGCCTTCGAAATTGGACCCTTATAATGTAG AGAAAATGTAACcaaattttagtaaatttgggacgaAAAATCGACCCCTA CGCTATAATTTCATGAAAACCTTTGACCGttaaaaggccaaaaaattgtc agaatttccaaaatttaagcCGAAGACCTATTTTCCGAAAAAGTTTCTCT TTAGAAATACGGAAGGGCAACATATTGAATTGCAATGGACAATTGACAAC TTACCCTAAAGCAATTGAATCTCCAATCACAAGACAGTTAGGTTTCCCTT CAAAATACGTTTTCATAACACCTGGTTTACACACTCGTGAAGCTTTTATA TCACCATCAGGTACAACATTTTGTTGGTTAGTGGAAACCAGCCCTAATGA CTGTTGCTCTTCATGCTTGATCTCTTGGCGATGTTGCGTCTTGTTTGTAG CCGGTTTGGTCGGCGTCATAGGGCCAGCGGCACTGTTTGATAATAGAGAG ACCTTGTCATCTGGAGATTTCTCTGAAGCATCTAATTTATCAATCAAGTT TTGAATGCTTTTGTctggttttgttttcaaatgttGGTCCTGTTTTTTGG CCGGTGAGTCGGTCTTCACCTTCTGCTTTGTATTGAACTTATTTGCCTCG ATTGCtttgcttttgatttttttgtcaacCGTTGGCGATACATTTTGCTC TTTCTTTCTCTCAATTGccttatttttgatttttttgctgcTCGACGAGT CATTTGACTTTGTTTTTGTCTCGATTGCTTTGTTTTCAATCTTTTTATCA GCAACGGGTGACAACTTTTGTTGCTTCTTTAACTCGCTAGCCTTGATGTC AACTTTTTTTGTCTCTGTTGTAAAAGTAGgttttttatctgttttactAC TTTTTGTTACTGCTGGTTTCAGTTTTTCAGTTGTTATTACAGAAGGATGA GGGATTGGTTGCTGTGAAGTAGCTGTTGTATGTTTCTTCTTGGCCGTGTT GTGTTCTGGCATCACTTTCTTCTTCTGTATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000060XLOC_000060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000112-exon-sc0000001-1491911889:2134555..2134762TCONS_00000112-exon-sc0000001-1491911889:2134555..2134762Clytia hemisphaericaexon
TCONS_00000112-exon-sc0000001-1510915933:2134555..2134762TCONS_00000112-exon-sc0000001-1510915933:2134555..2134762Clytia hemisphaericaexon
TCONS_00000112-exon-sc0000001-1491911889:2135105..2135889TCONS_00000112-exon-sc0000001-1491911889:2135105..2135889Clytia hemisphaericaexon
TCONS_00000112-exon-sc0000001-1510915933:2135105..2135889TCONS_00000112-exon-sc0000001-1510915933:2135105..2135889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2134555..2135889 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.102754 0 0 0.582227 0.606969 0.331073 0 0.546536 8.59853e-10 0.000164995 0 0.175288 0 0 0 0 0 0 0 0 0 1.16408 0 0 0.180162 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php