TCONS_00000111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000111
Unique NameTCONS_00000111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000111 ID=TCONS_00000111|Name=TCONS_00000111|organism=Clytia hemisphaerica|type=transcript|length=1829bp
CTTACCTCTTCATCTGAAGACTCCTTCCCATTCTCCTCAAGTGCGTCACC
TTCGCTCATCGCTTCTCGCATTTCATCCTCATCAATGTTATCTTTATTGT
TATCGAACACAGTCTTCCAAATTTTGACCTCGTGTTTTAATCGTTCACTC
TCTCGATACAATTCCTCGTAAATTTGTATAATCTCATCTCGCTCTTTGAT
CAAATCCTCGTTATCCACAGCTAAATCTTCGTTTTCTTCCACTATTTTTT
CGTTCTCCAGTTGCGAGTTGATAAGTTCCTGTCTTAATCTCCCGATCTCG
TAATTTGCGTCCTCAAGTTTAATTCCTAGCCTGCGTGTCTGATTTTTCTC
TTCCTCCAGGctattattgattttctttagcTCTCGTTCGAGTTTCTTAA
TCTCTTTCATAAAACCATCGCGCTCATCTAAACTATCTTGTAATTGAGCC
TCCAGTTCGTGTATATCTTCACCAGATCGAGGTTGTTGTTCCATTTGTTT
GATACCGTTCATAAGAGCAACACTTGCGTTctcaaaatctttttccaatT
CCAATATCTTCTCCTCTTTCATTTCCAAAGTTTCCTTAAGCTCTTCGAGT
TGAATCGTTAATTCTTCGATTAAATCTTCTTTCGATTTTATCGTGTCTCT
TTCGACTTGAATTTCATGTTCTAACTGTTCTATTCGTTCCTCACGATCAT
TTAAATCTTTTTCCATTCGGATTTGAATTTCTTCCTGTTCGACAAACTCG
CTTTCCAAACTTTGTAAATCGTTTAATTTCTGATCGTAATTGGTACGTTG
CGTTTTTAACTCGCTTTCGAGGTCTTTAACCAGTTCTTGTTTCGATTTAA
CGTCTTCGGAAAGattttttaattctttaattaAATCTCGAATTCGTTCA
TCCTTTTCCTTCCGTTTTTCAGAGTCCCTAGAGCATTGTTTTTCTAGTTC
CTCAATTCTTAAATCcttttctttacatttttcaaactctttatttttat
cattttctaaTTGGATTattctttcttgtttttctttacaCTTATTACAG
TCTCCATCTACCGTGGCTGTAACAGATGTCGTCGTTATCGCTGTGTCAAT
ACCGTTCACTTTTGATCGTCGAGAACGTCTCGGTGATTCTATAACCGGAT
CATCAAGTGTACGGCGAGACGTTGTCCGATAAGAGCGAGTTTCGTCTGCA
GACGTGGTACTACGGTATGGACGGTCGTATCTGGAAGATGACGTCGTTGA
ATAATCAGTCGTTGGTGTATAATCATCTAAGCGTCTCGAGCTACGGCTAC
TTCTGTACGTATCGAGCGGGTCGTCTAGTACGCTTCTACGGTATCGGCTA
CTGCCTGCGCTAGTACCACGTGTTAATCCACCAATGTCATCTGAGTAAGA
AGTTCGGGTTGAACGGTAAGAAGAACGGCCGAGTAAATCATCCGAGTTTC
TACTACTCGAATACCGAGTTGATCGTAAACGTTCGGTCATATTCTCGTCT
TCCGAGTCGCTTTTACCGTCGGCTTTTTCGTTTTCTCGTTGCTCGGTAAT
CGGGACCGATGGATTTTTCGTATTCTTAGATAAAAATTGTTCAGGACCTT
CAATTTGTTTTAAATTGGTTAAATGCCTGATTTCGTATTTTAATAAAGAA
GCTTTTGGAAATCCAGAAGATTGGGTACCGTCACCATTTTCTGTTGGACT
TAAAACCAAGTTGTTATTTGCACTAAAATCACTTTTCCACTCTTTATCAT
CTGCAGTGTGAATGGCCCACTTGGGTTGTGTCGTATTTGTGGTGATATCA
CGGACTTTGTTTGAACCGTCTTTTTCTAT
Run BLAST on NCBI

transcript from alignment at sc0000001:2089782..2091678+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000111 ID=TCONS_00000111|Name=TCONS_00000111|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at sc0000001:2089782..2091678+ (Clytia hemisphaerica)
CTTACCTCTTCATCTGAAGACTCCTTCCCATTCTCCTCAAGTGCGTCACC TTCGCTCATCGCTTCTCGCATTTCATCCTCATCAATGTTATCTTTATTGT TATCGAACACAGTCTTCCAAATTTTGACCTCGTGTTTTAATCGTTCACTC TCTCGATACAATTCCTCGTAAATTTGTATAATCTCATCTCGCTCTTTGAT CAAATCCTCGTTATCCACAGCTAAATCTTCGTTTTCTTCCACTATTTTTT CGTTCTCCAGTTGCGAGTTGATAAGTTCCTGTCTTAATCTCCCGATCTCG TAATTTGCGTCCTCAAGTTTAATTCCTAGCCTGCGTGTCTGATTTTTCTC TTCCTCCAGGctattattgattttctttagcTCTCGTTCGAGTTTCTTAA TCTCTTTCATAAAACCATCGCGCTCATCTAAACTATCTTGTAATTGAGCC TCCAGTTCGTGTATATCTTCACCAGATCGAGGTTGTTGTTCCATTTGTTT GATACCGTTCATAAGAGCAACACTTGCGTTctcaaaatctttttccaatT CCAATATCTTCTCCTCTTTCATTTCCAAAGTTTCCTTAAGCTCTTCGAGT TGAATCGTTAATTCTTCGATTAAATCTTCTTTCGATTTTATCGTGTCTCT TTCGACTTGAATTTCATGTTCTAACTGTTCTATTCGTTCCTCACGATCAT TTAAATCTTTTTCCATTCGGATTTGAATTTCTTCCTGTTCGACAAACTCG CTTTCCAAACTTTGTAAATCGTTTAATTTCTGATCGTAATTGGTACGTTG CGTTTTTAACTCGCTTTCGAGGTCTTTAACCAGTTCTTGTTTCGATTTAA CGTCTTCGGAAAGATTTTTTAACTCTTTAATTAAATCTTNTCTTTAACCA GTTCTTGTTTCGATTTAACGTCTTcggaaacattttttaattctttaatt aAATCTCGAATTCGTTCATCCTTTTCCTTCCGTTTTTCAGAGTCCCTAGA GCATTGTTTTTCTAGTTCCTCAATTCTTAAATCcttttctttacattttt caaactctttatttttatcattttctaaTTGGATTattctttcttgtttt tctttacaCTTATTACAGTCTCCATCTACCGTGGCTGTAACAGATGTCGT CGTTATCGCTGTGTCAATACCGTTCACTTTTGATCGTCGAGAACGTCTCG GTGATTCTATAACCGGATCATCAAGTGTACGGCGAGACGTTGTCCGATAA GAGCGAGTTTCGTCTGCAGACGTGGTACTACGGTATGGACGGTCGTATCT GGAAGATGACGTCGTTGAATAATCAGTCGTTGGTGTATAATCATCTAAGC GTCTCGAGCTACGGCTACTTCTGTACGTATCGAGCGGGTCGTCTAGTACG CTTCTACGGTATCGGCTACTGCCTGCGCTAGTACCACGTGTTAATCCACC AATGTCATCTGAGTAAGAAGTTCGGGTTGAACGGTAAGAAGAACGGCCGA GTAAATCATCCGAGTTTCTACTACTCGAATACCGAGTTGATCGTAAACGT TCGGTCATATTCTCGTCTTCCGAGTCGCTTTTACCGTCGGCTTTTTCGTT TTCTCGTTGCTCGGTAATCGGGACCGATGGATTTTTCGTATTCTTAGATA AAAATTGTTCAGGACCTTCAATTTGTTTTAAATTGGTTAAATGCCTGATT TCGTATTTTAATAAAGAAGCTTTTGGAAATCCAGAAGATTGGGTACCGTC ACCATTTTCTGTTGGACTTAAAACCAAGTTGTTATTTGCACTAAAATCAC TTTTCCACTCTTTATCATCTGCAGTGTGAATGGCCCACTTGGGTTGTGTC GTATTTGTGGTGATATCACGGACTTTGTTTGAACCGTCTTTTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000059XLOC_000059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000111-exon-sc0000001-1491911889:2089782..2090644TCONS_00000111-exon-sc0000001-1491911889:2089782..2090644Clytia hemisphaericaexon
TCONS_00000111-exon-sc0000001-1510915933:2089782..2090644TCONS_00000111-exon-sc0000001-1510915933:2089782..2090644Clytia hemisphaericaexon
TCONS_00000111-exon-sc0000001-1491911889:2090713..2091678TCONS_00000111-exon-sc0000001-1491911889:2090713..2091678Clytia hemisphaericaexon
TCONS_00000111-exon-sc0000001-1510915933:2090713..2091678TCONS_00000111-exon-sc0000001-1510915933:2090713..2091678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2089782..2091678 +
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355156 0 0.0663394 0.000836733 3.09838 2.10732 2.83272 4.39788 0.292396 1.26667 0.142613 0.67315 0 0.0565815 1.45225 0.335332 2.53901 0.272799 0.221396 0 2.32059 2.80714 1.20432 2.89339 0 0.400819 1.46288e-07 0.00254358 0.0071232 0.557386
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Spatial Expression
in the tripal_feature_cv_term.tpl.php