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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000109 ID=TCONS_00000109|Name=TCONS_00000109|organism=Clytia hemisphaerica|type=transcript|length=814bp
GTTTCAAATTGTCAAGCTAAGTGTAAACAACAAGGCAACAAACACTCACA
AAGATGAAGATTTGGAAAGCTTTGTTACTCGTCTCCTTCTTGGTGTACAA
AGTTCACTGTGAAACAGAACAAGAGGCGAAAACTATTTCCAAtgatgaag
aaacaacaaatgaCATTGAAAATGACGAAGTAACGATGGACCTTCTAGAC
CAAGATGAAGACCAAGAAGATGAACAAAGTGAAGATGAAGCAAGTGAACa
acttgaaaatgaagaagaaatgaaAGATGAACTGGAAGAGCAAGATCTTA
AAGAAGATGAAGACGCAAGCTACAAGCGATTTCTTTACACCAAGAAGGTC
TTCATCTTCAAAGACAAACACCCTGTTCAATGTCAAGTCACCAAAAGCAG
CAACAACCCAATCAGATGCTACCTCAAGTACGCATGCGTCAAACGTCATG
GTAACAAATGCATTAAAAAGAAAGTGTGGAAATTTTGCGTTTTCAGATTC
ACAAAGACATGTTTGTTCACATCCAAATTCGTCATCAAGAAATGTTTCAG
AATCAGACATGGTGGAGGCTACAAAGTCAAATGTTATAAAAGTGCACCAC
AATtggtcaaaattcgaaaatctGCAGGTGTCATCAATAAAGCCAAATTG
GTCAAAGTCTATTACACCAAACACTAGATATGGACTTCCGATCAAATCAA
ACCAAATGAACTGGACTGGACCTGCAAACGGACAACAATTTTTAACTTAC
TACTtaacaaatttttttacctttttgtaagcttacattttttaaattgc
tAAATATATTTGAC Run BLAST on NCBI protein sequence of TCONS_00000109-protein >TCONS_00000109-protein ID=TCONS_00000109-protein|Name=TCONS_00000109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MKIWKALLLVSFLVYKVHCETEQEAKTISNDEETTNDIENDEVTMDLLDQ
DEDQEDEQSEDEASEQLENEEEMKDELEEQDLKEDEDASYKRFLYTKKVF
IFKDKHPVQCQVTKSSNNPIRCYLKYACVKRHGNKCIKKKVWKFCVFRFT
KTCLFTSKFVIKKCFRIRHGGGYKVKCYKSAPQLVKIRKSAGVINKAKLV
KVYYTKH Run BLAST on NCBI transcript from alignment at sc0000001:1981881..1982856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000109 ID=TCONS_00000109|Name=TCONS_00000109|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at sc0000001:1981881..1982856+ (Clytia hemisphaerica)
GTTTCAAATTGTCAAGCTAAGTGTAAACAACAAGGCAACAAACACTCACA
AAGATGAAGATTTGGAAAGCTTTGTTACTCGTCTCCTTCTTGGTGTACAA
AGTTCACTGTGAAACAGAACAAGAGGCGAAAACTATTTCCAAtgatgaag
aaacaacaaatgaCATTGAAAATGACGAAGTAACGATGGACCTTCTAGAC
CAAGATGAAGACCAAGAAGATGAACAAAGTGAAGATGAAGCAAGTGAACa
acttgaaaatgaagaagaaatgaaAGATGAACTGGAAGAGCAAGATCTTA
AAGAAGGTGAGattttttcttctgatttttcaaAGAAGAGTCTGTCAAAA
CTTTGAGGTTATTTTTCAGCCACACACAGTGTAAAACTTTTAACGTTAAC
GGTTTGATacgtttcaagtttttttttgtaaattcaataaaatcttACCT
TGCGTTTTATGTTCAAAGATGAAGACGCAAGCTACAAGCGATTTCTTTAC
ACCAAGAAGGTCTTCATCTTCAAAGACAAACACCCTGTTCAATGTCAAGT
CACCAAAAGCAGCAACAACCCAATCAGATGCTACCTCAAGTACGCATGCG
TCAAACGTCATGGTAACAAATGCATTAAAAAGAAAGTGTGGAAATTTTGC
GTTTTCAGATTCACAAAGACATGTTTGTTCACATCCAAATTCGTCATCAA
GAAATGTTTCAGAATCAGACATGGTGGAGGCTACAAAGTCAAATGTTATA
AAAGTGCACCACAATtggtcaaaattcgaaaatctGCAGGTGTCATCAAT
AAAGCCAAATTGGTCAAAGTCTATTACACCAAACACTAGATATGGACTTC
CGATCAAATCAAACCAAATGAACTGGACTGGACCTGCAAACGGACAACAA
TTTTTAACTTACTACTtaacaaatttttttacctttttgtaagcttacat
tttttaaattgctAAATATATTTGAC Coding sequence (CDS) from alignment at sc0000001:1981881..1982856+ >TCONS_00000109 ID=TCONS_00000109|Name=TCONS_00000109|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000001:1981881..1982856+ (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTGTTACTCGTCTCCTTCTTGGTGTACAAAGT
TCACTGTGAAACAGAACAAGAGGCGAAAACTATTTCCAAtgatgaagaaa
caacaaatgaCATTGAAAATGACGAAGTAACGATGGACCTTCTAGACCAA
GATGAAGACCAAGAAGATGAACAAAGTGAAGATGAAGCAAGTGAACaact
tgaaaatgaagaagaaatgaaAGATGAACTGGAAGAGCAAGATCTTAAAG
AAGATGAAGACGCAAGCTACAAGCGATTTCTTTACACCAAGAAGGTCTTC
ATCTTCAAAGACAAACACCCTGTTCAATGTCAAGTCACCAAAAGCAGCAA
CAACCCAATCAGATGCTACCTCAAGTACGCATGCGTCAAACGTCATGGTA
ACAAATGCATTAAAAAGAAAGTGTGGAAATTTTGCGTTTTCAGATTCACA
AAGACATGTTTGTTCACATCCAAATTCGTCATCAAGAAATGTTTCAGAAT
CAGACATGGTGGAGGCTACAAAGTCAAATGTTATAAAAGTGCACCACAAT
tggtcaaaattcgaaaatctGCAGGTGTCATCAATAAAGCCAAATTGGTC
AAAGTCTATTACACCAAACACTAGATGAAGATTTGGAAAGCTTTGTTACT
CGTCTCCTTCTTGGTGTACAAAGTTCACTGTGAAACAGAACAAGAGGCGA
AAACTATTTCCAAtgatgaagaaacaacaaatgaCATTGAAAATGACGAA
GTAACGATGGACCTTCTAGACCAAGATGAAGACCAAGAAGATGAACAAAG
TGAAGATGAAGCAAGTGAACaacttgaaaatgaagaagaaatgaaAGATG
AACTGGAAGAGCAAGATCTTAAAGAAGATGAAGACGCAAGCTACAAGCGA
TTTCTTTACACCAAGAAGGTCTTCATCTTCAAAGACAAACACCCTGTTCA
ATGTCAAGTCACCAAAAGCAGCAACAACCCAATCAGATGCTACCTCAAGT
ACGCATGCGTCAAACGTCATGGTAACAAATGCATTAAAAAGAAAGTGTGG
AAATTTTGCGTTTTCAGATTCACAAAGACATGTTTGTTCACATCCAAATT
CGTCATCAAGAAATGTTTCAGAATCAGACATGGTGGAGGCTACAAAGTCA
AATGTTATAAAAGTGCACCACAATtggtcaaaattcgaaaatctGCAGGT
GTCATCAATAAAGCCAAATTGGTCAAAGTCTATTACACCAAACACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000109-exon-sc0000001-1491911889:1981881..1982186 | TCONS_00000109-exon-sc0000001-1491911889:1981881..1982186 | Clytia hemisphaerica | exon |
| TCONS_00000109-exon-sc0000001-1510915933:1981881..1982186 | TCONS_00000109-exon-sc0000001-1510915933:1981881..1982186 | Clytia hemisphaerica | exon |
| TCONS_00000109-exon-sc0000001-1575043694:1981881..1982186 | TCONS_00000109-exon-sc0000001-1575043694:1981881..1982186 | Clytia hemisphaerica | exon |
| TCONS_00000109-exon-sc0000001-1491911889:1982349..1982856 | TCONS_00000109-exon-sc0000001-1491911889:1982349..1982856 | Clytia hemisphaerica | exon |
| TCONS_00000109-exon-sc0000001-1510915933:1982349..1982856 | TCONS_00000109-exon-sc0000001-1510915933:1982349..1982856 | Clytia hemisphaerica | exon |
| TCONS_00000109-exon-sc0000001-1575043694:1982349..1982856 | TCONS_00000109-exon-sc0000001-1575043694:1982349..1982856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1981881..1982856 + |
Blast
The following BLAST results are available for this feature:
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