TCONS_00000106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000106
Unique NameTCONS_00000106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=transcript|length=858bp
GTGTGAAGTAATTATCgacgaaaaacttttttgaaagatgTGGTGGCGCG
CTACATCATTGATGACCGAAGACctaaagaaatcttcgaaagcAAGACTT
CCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGGGTTTTCAATCAGG
CTGTGGAAATACACTAAGCCGAAATTTAAATGATGACGAGTTGTGTCAGA
CCAATAGAACATTAATCAGTTACAAGAATGTTACACTTCCTGACAAACTT
TACGGTGGCCGAAACAAACAGCCATGCATTGTTACCGATgataaagaatt
tcttcaaagAAAGATTATGAAGGAGTTAAACGTTGGCTCATTGGACTTCA
GCATTGCGATGAAAACTTATCAAAATGTCGTCAAAGTCCAGAATGAGGAA
AATGCATACGTTGGAGAAGAAGAGAGTATTGGTGCACCTTTAAAAGATAG
TGATGTCGATACAAAAGTAAAGGGATGTGAGGATGCTTCTCCAACAAATG
ATAATGCTCTTTTGGAAGAACTTCGCACAATCAAAGGTGATTACGGTAAA
ATAAAAGGTGACTATGAGAGTATTTTAGAAAGAAACACGGCAGCTGAAAC
TGAGATCCGGCGATTATCTTTGGTGAAAGAAGAATCTGATCTGGCGCACC
GTGAAGAGGCGGACGCTTTGTGCAATACGATCGAAAATTTAAATAAACAA
TTGATAATGGCCCGTGAAGAGGTTGAAGATATGAGCTTCGATATCAAGGA
ATGTGTGACCGATACTACCTCGaagttgaaacaacattttgaCGTGTTGT
TGaccgaagaaaaaaaacacaaccaAGGCCTTCTAGCAGAAAAAGAGGCT
AAAATTTG
Run BLAST on NCBI

protein sequence of TCONS_00000106-protein

>TCONS_00000106-protein ID=TCONS_00000106-protein|Name=TCONS_00000106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MWWRATSLMTEDLKKSSKARLPKGFYHGENQIQGFQSGCGNTLSRNLNDD
ELCQTNRTLISYKNVTLPDKLYGGRNKQPCIVTDDKEFLQRKIMKELNVG
SLDFSIAMKTYQNVVKVQNEENAYVGEEESIGAPLKDSDVDTKVKGCEDA
SPTNDNALLEELRTIKGDYGKIKGDYESILERNTAAETEIRRLSLVKEES
DLAHREEADALCNTIENLNKQLIMAREEVEDMSFDIKECVTDTTSKLKQH
FDVLLTEEKKHNQGLLAEKEAKI
Run BLAST on NCBI

transcript from alignment at sc0000001:1953468..1954853+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=transcript|length=1386bp|location=Sequence derived from alignment at sc0000001:1953468..1954853+ (Clytia hemisphaerica)
GTGTGAAGTAATTATCgacgaaaaacttttttgaaagatgTGGTGGCGCG CTACATCATTGATGACCGAAGACctaaagaaatcttcgaaagcAAGACTT CCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGGGTTTTCAATCAGG CTGTGGAAATACACTAAGCCGAAATTTAAATGATGACGAGTTGTGTCAGA CCAATAGAACATTAATCAGTTACAAGAATGTTACACTTCCTGACAAACTT TACGGTGGCCGAAACAAACAGCCATGCATTGTTACCGATgataaagaatt tcttcaaagAAAGGTTTGTTTACCGAGTCTATAATTACAATTTTCAGTAT ACAGTAAGGAAATGAAGAATATTACCCCAAtcagctagcacacaacgttg tttcaatgtttaaATAATTTTCACAACTTCAAtacaacgttagatgaatg ttgaaacaattTTATGTACCAGCTGGGCATATCTCACTGTCCTTGTTCGA TTAGAAAACATAATATCTTCTACCCCAACTACAACAGTCACCTGCTGAAG AAAGGCCGACCAAATTTACAAGAATTTTCATTTACCTTTGACAAAATAAG TTTTGTATAACTTTTCggttttaaacaaaaagtgaACGGATCTTCTTGTA AAACCGCCGGCTTGATCCGGACAATGTTTGCCACGCGATATACGCTTTTT TACGACTGTTTATCGGCATAAAGGTGGCTCTCACATTGATGCATTTTGTC ACACGAAAAAGGCGTGGCCTCAGCTTTAATAAATTTAGAACTCGGGTTCA TCCGCAAACTCCGACTTAAATATCTTTTACATCGGTTATAGATTATGAAG GAGTTAAACGTTGGCTCATTGGACTTCAGCATTGCGATGAAAACTTATCA AAATGTCGTCAAAGTCCAGAATGAGGAAAATGCATACGTTGGAGAAGAAG AGAGTATTGGTGCACCTTTAAAAGATAGTGATGTCGATACAAAAGTAAAG GGATGTGAGGATGCTTCTCCAACAAATGATAATGCTCTTTTGGAAGAACT TCGCACAATCAAAGGTGATTACGGTAAAATAAAAGGTGACTATGAGAGTA TTTTAGAAAGAAACACGGCAGCTGAAACTGAGATCCGGCGATTATCTTTG GTGAAAGAAGAATCTGATCTGGCGCACCGTGAAGAGGCGGACGCTTTGTG CAATACGATCGAAAATTTAAATAAACAATTGATAATGGCCCGTGAAGAGG TTGAAGATATGAGCTTCGATATCAAGGAATGTGTGACCGATACTACCTCG aagttgaaacaacattttgaCGTGTTGTTGaccgaagaaaaaaaacacaa ccaAGGCCTTCTAGCAGAAAAAGAGGCTAAAATTTG

Coding sequence (CDS) from alignment at sc0000001:1953468..1954853+

>TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000001:1953468..1954853+ (Clytia hemisphaerica)
atgTGGTGGCGCGCTACATCATTGATGACCGAAGACctaaagaaatcttc
gaaagcAAGACTTCCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGG
GTTTTCAATCAGGCTGTGGAAATACACTAAGCCGAAATTTAAATGATGAC
GAGTTGTGTCAGACCAATAGAACATTAATCAGTTACAAGAATGTTACACT
TCCTGACAAACTTTACGGTGGCCGAAACAAACAGCCATGCATTGTTACCG
ATgataaagaatttcttcaaagAAAGATTATGAAGGAGTTAAACGTTGGC
TCATTGGACTTCAGCATTGCGATGAAAACTTATCAAAATGTCGTCAAAGT
CCAGAATGAGGAAAATGCATACGTTGGAGAAGAAGAGAGTATTGGTGCAC
CTTTAAAAGATAGTGATGTCGATACAAAAGTAAAGGGATGTGAGGATGCT
TCTCCAACAAATGATAATGCTCTTTTGGAAGAACTTCGCACAATCAAAGG
TGATTACGGTAAAATAAAAGGTGACTATGAGAGTATTTTAGAAAGAAACA
CGGCAGCTGAAACTGAGATCCGGCGATTATCTTTGGTGAAAGAAGAATCT
GATCTGGCGCACCGTGAAGAGGCGGACGCTTTGTGCAATACGATCGAAAA
TTTAAATAAACAATTGATAATGGCCCGTGAAGAGGTTGAAGATATGAGCT
TCGATATCAAGGAATGTGTGACCGATACTACCTCGaagttgaaacaacat
tttgaCGTGTTGTTGaccgaagaaaaaaaacacaaccaAGGCCTTCTAGC
AGAAAAAGAGGCTAAAATTatgTGGTGGCGCGCTACATCATTGATGACCG
AAGACctaaagaaatcttcgaaagcAAGACTTCCAAAGGGGTTCTATCAT
GGTGAAAATCAAATCCAGGGTTTTCAATCAGGCTGTGGAAATACACTAAG
CCGAAATTTAAATGATGACGAGTTGTGTCAGACCAATAGAACATTAATCA
GTTACAAGAATGTTACACTTCCTGACAAACTTTACGGTGGCCGAAACAAA
CAGCCATGCATTGTTACCGATgataaagaatttcttcaaagAAAGATTAT
GAAGGAGTTAAACGTTGGCTCATTGGACTTCAGCATTGCGATGAAAACTT
ATCAAAATGTCGTCAAAGTCCAGAATGAGGAAAATGCATACGTTGGAGAA
GAAGAGAGTATTGGTGCACCTTTAAAAGATAGTGATGTCGATACAAAAGT
AAAGGGATGTGAGGATGCTTCTCCAACAAATGATAATGCTCTTTTGGAAG
AACTTCGCACAATCAAAGGTGATTACGGTAAAATAAAAGGTGACTATGAG
AGTATTTTAGAAAGAAACACGGCAGCTGAAACTGAGATCCGGCGATTATC
TTTGGTGAAAGAAGAATCTGATCTGGCGCACCGTGAAGAGGCGGACGCTT
TGTGCAATACGATCGAAAATTTAAATAAACAATTGATAATGGCCCGTGAA
GAGGTTGAAGATATGAGCTTCGATATCAAGGAATGTGTGACCGATACTAC
CTCGaagttgaaacaacattttgaCGTGTTGTTGaccgaagaaaaaaaac
acaaccaAGGCCTTCTAGCAGAAAAAGAGGCTAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000054XLOC_000054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000106-exon-sc0000001-1491911889:1953468..1953780TCONS_00000106-exon-sc0000001-1491911889:1953468..1953780Clytia hemisphaericaexon
TCONS_00000106-exon-sc0000001-1510915933:1953468..1953780TCONS_00000106-exon-sc0000001-1510915933:1953468..1953780Clytia hemisphaericaexon
TCONS_00000106-exon-sc0000001-1491911889:1954309..1954853TCONS_00000106-exon-sc0000001-1491911889:1954309..1954853Clytia hemisphaericaexon
TCONS_00000106-exon-sc0000001-1510915933:1954309..1954853TCONS_00000106-exon-sc0000001-1510915933:1954309..1954853Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000106-proteinTCONS_00000106-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1953468..1954853 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.159922 0.185684 0.0605544 0.147438 0 0.140562 0 0 0 0 0 0 0 0 0 0 0 0.116221 0 0 0.15468 0 0 0.176075 0.680952 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php