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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=transcript|length=858bp
GTGTGAAGTAATTATCgacgaaaaacttttttgaaagatgTGGTGGCGCG
CTACATCATTGATGACCGAAGACctaaagaaatcttcgaaagcAAGACTT
CCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGGGTTTTCAATCAGG
CTGTGGAAATACACTAAGCCGAAATTTAAATGATGACGAGTTGTGTCAGA
CCAATAGAACATTAATCAGTTACAAGAATGTTACACTTCCTGACAAACTT
TACGGTGGCCGAAACAAACAGCCATGCATTGTTACCGATgataaagaatt
tcttcaaagAAAGATTATGAAGGAGTTAAACGTTGGCTCATTGGACTTCA
GCATTGCGATGAAAACTTATCAAAATGTCGTCAAAGTCCAGAATGAGGAA
AATGCATACGTTGGAGAAGAAGAGAGTATTGGTGCACCTTTAAAAGATAG
TGATGTCGATACAAAAGTAAAGGGATGTGAGGATGCTTCTCCAACAAATG
ATAATGCTCTTTTGGAAGAACTTCGCACAATCAAAGGTGATTACGGTAAA
ATAAAAGGTGACTATGAGAGTATTTTAGAAAGAAACACGGCAGCTGAAAC
TGAGATCCGGCGATTATCTTTGGTGAAAGAAGAATCTGATCTGGCGCACC
GTGAAGAGGCGGACGCTTTGTGCAATACGATCGAAAATTTAAATAAACAA
TTGATAATGGCCCGTGAAGAGGTTGAAGATATGAGCTTCGATATCAAGGA
ATGTGTGACCGATACTACCTCGaagttgaaacaacattttgaCGTGTTGT
TGaccgaagaaaaaaaacacaaccaAGGCCTTCTAGCAGAAAAAGAGGCT
AAAATTTG Run BLAST on NCBI protein sequence of TCONS_00000106-protein >TCONS_00000106-protein ID=TCONS_00000106-protein|Name=TCONS_00000106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MWWRATSLMTEDLKKSSKARLPKGFYHGENQIQGFQSGCGNTLSRNLNDD
ELCQTNRTLISYKNVTLPDKLYGGRNKQPCIVTDDKEFLQRKIMKELNVG
SLDFSIAMKTYQNVVKVQNEENAYVGEEESIGAPLKDSDVDTKVKGCEDA
SPTNDNALLEELRTIKGDYGKIKGDYESILERNTAAETEIRRLSLVKEES
DLAHREEADALCNTIENLNKQLIMAREEVEDMSFDIKECVTDTTSKLKQH
FDVLLTEEKKHNQGLLAEKEAKI Run BLAST on NCBI transcript from alignment at sc0000001:1953468..1954853+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=transcript|length=1386bp|location=Sequence derived from alignment at sc0000001:1953468..1954853+ (Clytia hemisphaerica)
GTGTGAAGTAATTATCgacgaaaaacttttttgaaagatgTGGTGGCGCG
CTACATCATTGATGACCGAAGACctaaagaaatcttcgaaagcAAGACTT
CCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGGGTTTTCAATCAGG
CTGTGGAAATACACTAAGCCGAAATTTAAATGATGACGAGTTGTGTCAGA
CCAATAGAACATTAATCAGTTACAAGAATGTTACACTTCCTGACAAACTT
TACGGTGGCCGAAACAAACAGCCATGCATTGTTACCGATgataaagaatt
tcttcaaagAAAGGTTTGTTTACCGAGTCTATAATTACAATTTTCAGTAT
ACAGTAAGGAAATGAAGAATATTACCCCAAtcagctagcacacaacgttg
tttcaatgtttaaATAATTTTCACAACTTCAAtacaacgttagatgaatg
ttgaaacaattTTATGTACCAGCTGGGCATATCTCACTGTCCTTGTTCGA
TTAGAAAACATAATATCTTCTACCCCAACTACAACAGTCACCTGCTGAAG
AAAGGCCGACCAAATTTACAAGAATTTTCATTTACCTTTGACAAAATAAG
TTTTGTATAACTTTTCggttttaaacaaaaagtgaACGGATCTTCTTGTA
AAACCGCCGGCTTGATCCGGACAATGTTTGCCACGCGATATACGCTTTTT
TACGACTGTTTATCGGCATAAAGGTGGCTCTCACATTGATGCATTTTGTC
ACACGAAAAAGGCGTGGCCTCAGCTTTAATAAATTTAGAACTCGGGTTCA
TCCGCAAACTCCGACTTAAATATCTTTTACATCGGTTATAGATTATGAAG
GAGTTAAACGTTGGCTCATTGGACTTCAGCATTGCGATGAAAACTTATCA
AAATGTCGTCAAAGTCCAGAATGAGGAAAATGCATACGTTGGAGAAGAAG
AGAGTATTGGTGCACCTTTAAAAGATAGTGATGTCGATACAAAAGTAAAG
GGATGTGAGGATGCTTCTCCAACAAATGATAATGCTCTTTTGGAAGAACT
TCGCACAATCAAAGGTGATTACGGTAAAATAAAAGGTGACTATGAGAGTA
TTTTAGAAAGAAACACGGCAGCTGAAACTGAGATCCGGCGATTATCTTTG
GTGAAAGAAGAATCTGATCTGGCGCACCGTGAAGAGGCGGACGCTTTGTG
CAATACGATCGAAAATTTAAATAAACAATTGATAATGGCCCGTGAAGAGG
TTGAAGATATGAGCTTCGATATCAAGGAATGTGTGACCGATACTACCTCG
aagttgaaacaacattttgaCGTGTTGTTGaccgaagaaaaaaaacacaa
ccaAGGCCTTCTAGCAGAAAAAGAGGCTAAAATTTG Coding sequence (CDS) from alignment at sc0000001:1953468..1954853+ >TCONS_00000106 ID=TCONS_00000106|Name=TCONS_00000106|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000001:1953468..1954853+ (Clytia hemisphaerica)
atgTGGTGGCGCGCTACATCATTGATGACCGAAGACctaaagaaatcttc
gaaagcAAGACTTCCAAAGGGGTTCTATCATGGTGAAAATCAAATCCAGG
GTTTTCAATCAGGCTGTGGAAATACACTAAGCCGAAATTTAAATGATGAC
GAGTTGTGTCAGACCAATAGAACATTAATCAGTTACAAGAATGTTACACT
TCCTGACAAACTTTACGGTGGCCGAAACAAACAGCCATGCATTGTTACCG
ATgataaagaatttcttcaaagAAAGATTATGAAGGAGTTAAACGTTGGC
TCATTGGACTTCAGCATTGCGATGAAAACTTATCAAAATGTCGTCAAAGT
CCAGAATGAGGAAAATGCATACGTTGGAGAAGAAGAGAGTATTGGTGCAC
CTTTAAAAGATAGTGATGTCGATACAAAAGTAAAGGGATGTGAGGATGCT
TCTCCAACAAATGATAATGCTCTTTTGGAAGAACTTCGCACAATCAAAGG
TGATTACGGTAAAATAAAAGGTGACTATGAGAGTATTTTAGAAAGAAACA
CGGCAGCTGAAACTGAGATCCGGCGATTATCTTTGGTGAAAGAAGAATCT
GATCTGGCGCACCGTGAAGAGGCGGACGCTTTGTGCAATACGATCGAAAA
TTTAAATAAACAATTGATAATGGCCCGTGAAGAGGTTGAAGATATGAGCT
TCGATATCAAGGAATGTGTGACCGATACTACCTCGaagttgaaacaacat
tttgaCGTGTTGTTGaccgaagaaaaaaaacacaaccaAGGCCTTCTAGC
AGAAAAAGAGGCTAAAATTatgTGGTGGCGCGCTACATCATTGATGACCG
AAGACctaaagaaatcttcgaaagcAAGACTTCCAAAGGGGTTCTATCAT
GGTGAAAATCAAATCCAGGGTTTTCAATCAGGCTGTGGAAATACACTAAG
CCGAAATTTAAATGATGACGAGTTGTGTCAGACCAATAGAACATTAATCA
GTTACAAGAATGTTACACTTCCTGACAAACTTTACGGTGGCCGAAACAAA
CAGCCATGCATTGTTACCGATgataaagaatttcttcaaagAAAGATTAT
GAAGGAGTTAAACGTTGGCTCATTGGACTTCAGCATTGCGATGAAAACTT
ATCAAAATGTCGTCAAAGTCCAGAATGAGGAAAATGCATACGTTGGAGAA
GAAGAGAGTATTGGTGCACCTTTAAAAGATAGTGATGTCGATACAAAAGT
AAAGGGATGTGAGGATGCTTCTCCAACAAATGATAATGCTCTTTTGGAAG
AACTTCGCACAATCAAAGGTGATTACGGTAAAATAAAAGGTGACTATGAG
AGTATTTTAGAAAGAAACACGGCAGCTGAAACTGAGATCCGGCGATTATC
TTTGGTGAAAGAAGAATCTGATCTGGCGCACCGTGAAGAGGCGGACGCTT
TGTGCAATACGATCGAAAATTTAAATAAACAATTGATAATGGCCCGTGAA
GAGGTTGAAGATATGAGCTTCGATATCAAGGAATGTGTGACCGATACTAC
CTCGaagttgaaacaacattttgaCGTGTTGTTGaccgaagaaaaaaaac
acaaccaAGGCCTTCTAGCAGAAAAAGAGGCTAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000106-exon-sc0000001-1491911889:1953468..1953780 | TCONS_00000106-exon-sc0000001-1491911889:1953468..1953780 | Clytia hemisphaerica | exon |
| TCONS_00000106-exon-sc0000001-1510915933:1953468..1953780 | TCONS_00000106-exon-sc0000001-1510915933:1953468..1953780 | Clytia hemisphaerica | exon |
| TCONS_00000106-exon-sc0000001-1575043694:1953468..1953780 | TCONS_00000106-exon-sc0000001-1575043694:1953468..1953780 | Clytia hemisphaerica | exon |
| TCONS_00000106-exon-sc0000001-1491911889:1954309..1954853 | TCONS_00000106-exon-sc0000001-1491911889:1954309..1954853 | Clytia hemisphaerica | exon |
| TCONS_00000106-exon-sc0000001-1510915933:1954309..1954853 | TCONS_00000106-exon-sc0000001-1510915933:1954309..1954853 | Clytia hemisphaerica | exon |
| TCONS_00000106-exon-sc0000001-1575043694:1954309..1954853 | TCONS_00000106-exon-sc0000001-1575043694:1954309..1954853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1953468..1954853 + |
Blast
The following BLAST results are available for this feature:
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