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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000096 ID=TCONS_00000096|Name=TCONS_00000096|organism=Clytia hemisphaerica|type=transcript|length=2418bp
cccaaacattgaattttGTCTGAAAACACcttgcacctgaaaacctcaaa
ttttgcacctgcACTTGACTTTTTCCGATTTGTGCACTCAAGATCTCAAG
CAAACGTGCCACATTCTGCAAACTGGGTTTGCCtctaaaacaaggcaaat
tttgcagacTTTTCAGTACCCCCTTAAAAATGTTCTAGATCAATATACCT
CCAGTATGATATTTTTGACAATAAgtgttttcaaacattttctttttgct
ttttttaataattaaagctgacctgtgtcaataacctgtgacctgttgac
ctctTAAAGTTGATTTTCACATTCAGAatttcacttcattttattcacac
aattttgttttgattttcatgcATTCACCAAATGATACAAGCTTGTGTGT
GTTTTCATGCAAGCTGCTTTAGGGCCTGAAATAGATTTCAACTATCATAT
CTCCTAACCAATCCTAACATTATACCTGACATTTGCTTActatttttaaa
caaacaaagaaaatttgtttcTCTATTCCTGCCACTCAAGCACAAAATGT
TTAGAATATCTCTTTTATTCTGCTTTTTCAGCATAGAGGTGTGCCTCCTT
TGTATATCATATGAAAGAATATCTATAATCTAAGATTTCATTTATTTCTA
GTTTTAAAAActtgttatttttcattataAGAATGGAGAAGACAAATGAC
AGAATTGAATCTTCCGCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGA
GAAACTCGGGGATGCAGACTGTTCCCAGAAAGATTATGATCATTTTGTTG
AGCTATGTAAGAAAATGACTGATGCAGATTTCCTGtgcaaaattattgaa
aagctCCTGAATTGGCTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGA
AATGCTAACTTCATTACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAG
CTTATAGTGATGTTTATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCT
ATTGTTCTTATGCTTTTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTT
GACAAAATTCATATCCAATCGATTTGTTCAAGAACCTTTGACTGTCGAAA
TCATTTTATGGGGTTTACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTA
AAATCTAATGATGATTTTTGTACATTGTTACGGCATTTTGGCAAGGTTAC
TATTGAGAATGACAGAGCTCAAGTTCATCGTTTTTacaaaacaatgatcc
aatttttaatcaagaattaCGATTGGGTATTGGCAAAGGAGCTTGTACCT
TTAGTGCTTAATATTTCAGATCACAATGAAGATTTTGGGTGTTTCTTTGA
ACTCTTCGAAGGCATGGAATCATTGAAATCTGAACAAATCAAAATACTTG
TTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTG
TATGGTTTTGGGTCTACTGAAGAATCAGAGTACGAAAGTATGTTGAAGta
tgtaaaaattattttcaaggaTGACTTTTATTATGATATAGCAAAACAGC
TGATAGCCCTTGACCAGTTCAAGTCCAAAGATCACGAGAAGATATACAAC
ACAAATAAAAAGAGCATTTTGCAAAGACTGATCCATGATTTAAAAAAGGA
TTTCTATTACAATGAAATTTACATTGATCTAGTACGTGTTCAGATTGAAA
ATCTAAAGCCACTACAAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAG
CCAGATGCCGTGTTTGGTTATGACGTAGGTATTGAAGAATTTTTAGAAAG
TGATAAAGTGAGGCTAGTTGTATCTGATGACTTTGAAAACGACTTGGAAA
TTGCACATGCGTGGATCAATGATCACGCTGGACAATATCTTGAAGATGGT
TATAGCTTTTCTGCGGTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGT
TATACTGCAAAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATT
TTAAGCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCA
AAATTAATGCGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGA
AAGAAATTAGATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAA
TAGACTTTAATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTC
ATTTATTTGGCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAG
ACTTATTTCAAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAAC
GAgttaaatttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAAT
CTGccaaatttaccaaattttctttctgccaaattttttttcctattGTG
AAGTGTAgcttattttaa Run BLAST on NCBI transcript from alignment at sc0000001:1847598..1850074+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000096 ID=TCONS_00000096|Name=TCONS_00000096|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0000001:1847598..1850074+ (Clytia hemisphaerica)
cccaaacattgaattttGTCTGAAAACACcttgcacctgaaaacctcaaa
ttttgcacctgcACTTGACTTTTTCCGATTTGTGCACTCAAGATCTCAAG
CAAACGTGCCACATTCTGCAAACTGGGTTTGCCtctaaaacaaggcaaat
tttgcagacTTTTCAGTACCCCCTTAAAAATGTTCTAGATCAATATACCT
CCAGTATGATATTTTTGACAATAAgtgttttcaaacattttctttttgct
ttttttaataattaaagctgacctgtgtcaataacctgtgacctgttgac
ctctTAAAGTTGATTTTCACATTCAGAatttcacttcattttattcacac
aattttgttttgattttcatgcATTCACCAAATGATACAAGCTTGTGTGT
GTTTTCATGCAAGCTGCTTTAGGGCCTGAAATAGATTTCAACTATCATAT
CTCCTAACCAATCCTAACATTATACCTGACATTTGCTTActatttttaaa
caaacaaagaaaatttgtttcTCTATTCCTGCCACTCAAGCACAAAATGT
TTAGAATATCTCTTTTATTCTGCTTTTTCAGCATAGAGGTGTGCCTCCTT
TGTATATCATATGAAAGAATATCTATAATCTAAGATTTCATTTATTTCTA
GTTTTAAAAActtgttatttttcattataAGAATGGAGAAGACAAATGAC
AGAATTGAATCTTCCGCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGA
GAAACTCGGGGATGCAGACTGTTCCCAGAAAGATTATGATCATTTTGTTG
AGCTATGTAAGAAAATGACTGATGCAGATTTCCTGtgcaaaattattgaa
aagctCCTGAATTGGCTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGA
AATGCTAACTTCATTACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAG
CTTATAGTGATGTTTATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCT
ATTGTTCTTATGCTTTTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTT
GACAAAATTCATATCCAATCGATTTGTTCAAGAACCTTTGACTGTCGAAA
TCATTTTATGGGGTTTACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTA
AAATCTAATGATGATTTTTGTACATTGTTACGGCATTTTGGCAAGGTTAC
TATTGAGAATGACAGAGCTCAAGTTCATCGTTTTTacaaaacaatgatcc
aatttttaatcaagaattaCGATTGGGTATTGGCAAAGGAGCTTGTACCT
TTAGTGCTTAATATTTCAGATCACAATGAAGATTTTGGGTGTTTCTTTGA
ACTCTTCGAAGGCATGGAATCATTGAAATCTGAACAAATCAAAATACTTG
TTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTG
TATGGTTTTGGGTCTACTGAAGAATCAGAGTACGAAAGTATGTTGAAGta
tgtaaaaattattttcaaggaTGACTTTTATTATGATATAGCAAAACAGC
TGATAGCCCTTGACCAGTTCAAGTCCAAAGATCACGAGAAGATATACAAC
ACAAATAAAAAGAGCATTTTGCAAAGACTGATCCATGATTTAAAAAAGGA
TTTCTATTACAATGAAATTTACATTGATCTAGTACGTGTTCAGATTGAAA
ATCTAAAGCCACTACAAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAG
CCAGATGCCGTGTTTGGTTATGACGTAGGTATTGAAGAATTTTTAGAAAG
TGATAAAGTGAGGCTAGTTGTATCTGATGACTTTGAAAACGACTTGGAAA
TTGCACATGCGTGGATCAATGATCACGCTGGACAATATCTTGAAGATGGT
TATAGCTTTTCTGCGGTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGT
TATACTGCAAAAAGAACATCATATTTGGGAAAGGAAACGAGNGAAGGCAC
AGTTGAAGTTATACTGCAAAAAGAACGTCATATTTGGGAAAGGAAACGAG
ATGGATATTTTAAGCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTG
CAGTGCCCAAAATTAATGCGTCTGGGCaccaaaagaaaatataatctCAG
ACAAAGAGAAAGAAATTAGATGGTCTTCAAATTTCACTTTGAATTACCAC
TTTTGTCAATAGACTTTAATGTATTACTTTAAATTTGACAGAATTGAATT
TTAAGACTCATTTATTTGGCTGACGGCTGACAAAAGTACCATGTTTTTAT
TAGAAAAAGACTTATTTCAAGTCCGTAAATAGCAAGAATTTGGAAGATAT
ATATAAAACGAgttaaatttggctgaaaaaaaaaaatttgcagtgTGTTT
TGGGAAAATCTGccaaatttaccaaattttctttctgccaaatttttttt
cctattGTGAAGTGTAgcttattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000096-exon-sc0000001-1491911889:1847598..1849534 | TCONS_00000096-exon-sc0000001-1491911889:1847598..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000096-exon-sc0000001-1510915933:1847598..1849534 | TCONS_00000096-exon-sc0000001-1510915933:1847598..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000096-exon-sc0000001-1575043694:1847598..1849534 | TCONS_00000096-exon-sc0000001-1575043694:1847598..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000096-exon-sc0000001-1491911889:1849594..1850074 | TCONS_00000096-exon-sc0000001-1491911889:1849594..1850074 | Clytia hemisphaerica | exon |
| TCONS_00000096-exon-sc0000001-1510915933:1849594..1850074 | TCONS_00000096-exon-sc0000001-1510915933:1849594..1850074 | Clytia hemisphaerica | exon |
| TCONS_00000096-exon-sc0000001-1575043694:1849594..1850074 | TCONS_00000096-exon-sc0000001-1575043694:1849594..1850074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1847598..1850074 + |
Blast
The following BLAST results are available for this feature:
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