TCONS_00000094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000094
Unique NameTCONS_00000094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000094 ID=TCONS_00000094|Name=TCONS_00000094|organism=Clytia hemisphaerica|type=transcript|length=543bp
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT
GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT
GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT
TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC
ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT
TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT
TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT
TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt
tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatat
Run BLAST on NCBI

transcript from alignment at sc0000001:1846916..1847458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000094 ID=TCONS_00000094|Name=TCONS_00000094|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000001:1846916..1847458+ (Clytia hemisphaerica)
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT
GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT
GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT
TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC
ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT
TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT
TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT
TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt
tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000048XLOC_000048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000094-exon-sc0000001-1491911889:1846916..1847458TCONS_00000094-exon-sc0000001-1491911889:1846916..1847458Clytia hemisphaericaexon
TCONS_00000094-exon-sc0000001-1510915933:1846916..1847458TCONS_00000094-exon-sc0000001-1510915933:1846916..1847458Clytia hemisphaericaexon
TCONS_00000094-exon-sc0000001-1575043694:1846916..1847458TCONS_00000094-exon-sc0000001-1575043694:1846916..1847458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1846916..1847458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.237774	0.816149	0.692289	1.43245	0.905551	1.36564	0.767095	0.148246	0.794708	0.538079	0.906064	0.603281	0.979855	0.774917	1.15379	1.07443	1.41932	0.790405	0.590787	2.19015	0.793088	0.333821	0.451237	0.912356	1.42495	0.445801	0	0.278568	0.335336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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