TCONS_00000091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000091
Unique NameTCONS_00000091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000091 ID=TCONS_00000091|Name=TCONS_00000091|organism=Clytia hemisphaerica|type=transcript|length=2860bp
gaattagtgaatatgatttttgaattcctcacatcctttttctgataaac
atacaaatttTCAGCCTTCAACtattttttcctccatttccagaaacatt
tgttAATCAACAGTTGCAACTTTTTTTTCTCCCATggaattcaaattttc
aaatgtcgCAAAAACGTTCTGCAATTTACCAATTTCCCGTCTAGctcgtg
tccacagtgttaaaTACCGCTAGAAAGCTAAGACCACTGGCTTTCTTTTA
TTAAAAACTGGAatgctttagcatacatagaagaaaagttagaagcgttc
aaagttcacggaaaaatgaaatatttggttTGATGTCAACAAAAGGTGtg
tgacttctggagtcgctaaaTTATAATCAAACGGCTGAATTATTCAAGTc
caatcaaacttaatcgaacgacaAATGTTCTATTTAAAAAAGTCACTAAG
ATTGTGAGTATTGCCAGACAgtgtttcagctagatcttattttttcccta
aattatgctaaacgaccccacttgTTCACTTCTTCTGGTATGAAATCGTA
ATAAGGAAACTTAGAAACTTACTAAACTAAGCGGTGCTGCAAATAACAAC
TGATGActggtaattaccggtcatctTGTAGTTTCTACCGGCCATTCTGA
AGCTCAATCTTTCATTTTGTCCAGTTAAAATTTGAAGACTAGAGGCTTTA
GATACTTAAAATAGCGCTTCTAATTTAAGAGTCGAATAGATTTTAAATTA
GTGTTTACTGTAGCCAATCTCAAGATTATTTCGGACTTTTCTAAACAGGT
TCTGCTAGACCTCCCgctcaaattatttttgttgtGTTCAAAAAATTACT
ggccaactgaaatttcctcatTTGCAGcgcttctttttcattttgaaagt
tAGAAAAAAAACTAGTACGCTTCTATATGCTTTTTGAAGAGCCTCCCTCC
TCCCCCCTCCCCCTCAGAGTTTACATACTTTTTGAAGGGCCCATACATAC
CTTATAACAGATTTTTAAGACAAAAGAATTACTTTGATCTTATCTACGTC
ACTAATGTTTATTAAATCTATATTGAATCAATATTACGATcactttatat
ttttcattgatCATAATAGGAATGGAGAATCAATTGCTGAAGattggaaa
aaatgaaacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCTGTTGACA
GACTTAGCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATTTGTTGCT
CTATGCAAGAAAATTAAAGATGTACACTTCTTATGCAAAATCACTGAGAG
GCTGCTAAGGTTAACCCCATATGTTGCATTATATTACGAAAACGAGGGTT
TTATCGAAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTTGTTAACC
TCTAAATCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTATGTCTGG
TGTGGTTATTACACTTTTTGCTAATGTTAATGATGGTTTGTTCAATCCAG
ATATTCTAACCAAATTGATATCCAACCAGTATATCTCCCAAGAGCCATCA
ACTATTGAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATTTggtcaa
aaaagatttgacatCTAATAAGAACTTTTGCACCTTGTTTCGTCAATTTG
GAATTGCAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTATTACATA
GCAATCATCCAATTTCTAGTCAAGAATTATAACTGGGAATTGGCAAAGGA
GCTNTATTACATAGCAATCATCCAATTTCTAGTCAAGAATTATGACTGGG
AATTGGCAAAGGAGCTTCTACCTTCAGTTCTTGATATCTCAGATAATAAT
GAAGATTTTGAGTATTTCTTTGCACTCTTTGAAGGCTTGGAATCAGTAAA
ATCTGAACATCTCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAA
AGGCTGTTTCTCGTGAAAAATTGTATGGTATTGGATATATTGATATATTT
GAATACCAAAGCATGTTGAAGTatctaaaaattgtttttaaagatGATTT
TTATTGCAATACAGCCAAACAGCTTACAACCCTTGATGAGTTCAAGTCTA
AAGATTATGAAAAAATGTGTAACACTACTAAAGAAAGTATTTTGCAAAGA
CTgattcaagatttgaaaaaggATTTCTATTTTAAGGAATCTTACATTGA
TCTAGTACGTGTTCAGATAGAAAACCTAAAGACGCTACAAGACAAAGGGT
GTCCAAAATCGTATTGGGAGCAGCCAGATGCCATTTTTTATGACGAACAT
ATTGAAGAATTTTTAGAAAGTGATAAAGTGACACTAGTTGTTTctgatga
atttgaaaatgacTTGGAATATGCAAATTCATGGATTAATGATTATGCCG
GACCACATCTTCACAGAGGTTATAGTTTCAGTGCTATCGCAAGGTTATCC
ACAGAAGGCACAGTTGAAGTTATActgcaaaaagaaaaacatatatATGA
AAGGAAACGAGATGGATATTTTAGACTGATGAATGAATTATTTGAATTGG
AAACTTTCTTGCAGTCTCCAAAGATAGTGCGTattggcacaaaaaggaaa
tacAATCTCagagaacgaaaaagaaaataaatcttaTTGTAGAAAATCGT
ATCTTATCGtagaaaattttcttaattcatCCAATACCTCACTTTTTCAA
TTGTTTGAGTGAGATTAGGTAGATAATTCATAAAATTGTAGCAAGACCgt
aattattttattaatttctaggaatttttcaaaattttgataaaaactta
actaaaaatttttttaacatgttTCATGTGTTTTACCCTTTCTGGTATTG
CCAAAAGACC
Run BLAST on NCBI

transcript from alignment at sc0000001:1843842..1846701+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000091 ID=TCONS_00000091|Name=TCONS_00000091|organism=Clytia hemisphaerica|type=transcript|length=2860bp|location=Sequence derived from alignment at sc0000001:1843842..1846701+ (Clytia hemisphaerica)
gaattagtgaatatgatttttgaattcctcacatcctttttctgataaac
atacaaatttTCAGCCTTCAACtattttttcctccatttccagaaacatt
tgttAATCAACAGTTGCAACTTTTTTTTCTCCCATggaattcaaattttc
aaatgtcgCAAAAACGTTCTGCAATTTACCAATTTCCCGTCTAGctcgtg
tccacagtgttaaaTACCGCTAGAAAGCTAAGACCACTGGCTTTCTTTTA
TTAAAAACTGGAatgctttagcatacatagaagaaaagttagaagcgttc
aaagttcacggaaaaatgaaatatttggttTGATGTCAACAAAAGGTGtg
tgacttctggagtcgctaaaTTATAATCAAACGGCTGAATTATTCAAGTc
caatcaaacttaatcgaacgacaAATGTTCTATTTAAAAAAGTCACTAAG
ATTGTGAGTATTGCCAGACAgtgtttcagctagatcttattttttcccta
aattatgctaaacgaccccacttgTTCACTTCTTCTGGTATGAAATCGTA
ATAAGGAAACTTAGAAACTTACTAAACTAAGCGGTGCTGCAAATAACAAC
TGATGActggtaattaccggtcatctTGTAGTTTCTACCGGCCATTCTGA
AGCTCAATCTTTCATTTTGTCCAGTTAAAATTTGAAGACTAGAGGCTTTA
GATACTTAAAATAGCGCTTCTAATTTAAGAGTCGAATAGATTTTAAATTA
GTGTTTACTGTAGCCAATCTCAAGATTATTTCGGACTTTTCTAAACAGGT
TCTGCTAGACCTCCCgctcaaattatttttgttgtGTTCAAAAAATTACT
ggccaactgaaatttcctcatTTGCAGcgcttctttttcattttgaaagt
tAGAAAAAAAACTAGTACGCTTCTATATGCTTTTTGAAGAGCCTCCCTCC
TCCCCCCTCCCCCTCAGAGTTTACATACTTTTTGAAGGGCCCATACATAC
CTTATAACAGATTTTTAAGACAAAAGAATTACTTTGATCTTATCTACGTC
ACTAATGTTTATTAAATCTATATTGAATCAATATTACGATcactttatat
ttttcattgatCATAATAGGAATGGAGAATCAATTGCTGAAGattggaaa
aaatgaaacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCTGTTGACA
GACTTAGCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATTTGTTGCT
CTATGCAAGAAAATTAAAGATGTACACTTCTTATGCAAAATCACTGAGAG
GCTGCTAAGGTTAACCCCATATGTTGCATTATATTACGAAAACGAGGGTT
TTATCGAAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTTGTTAACC
TCTAAATCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTATGTCTGG
TGTGGTTATTACACTTTTTGCTAATGTTAATGATGGTTTGTTCAATCCAG
ATATTCTAACCAAATTGATATCCAACCAGTATATCTCCCAAGAGCCATCA
ACTATTGAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATTTggtcaa
aaaagatttgacatCTAATAAGAACTTTTGCACCTTGTTTCGTCAATTTG
GAATTGCAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTATTACATA
GCAATCATCCAATTTCTAGTCAAGAATTATAACTGGGAATTGGCAAAGGA
GCTNTATTACATAGCAATCATCCAATTTCTAGTCAAGAATTATGACTGGG
AATTGGCAAAGGAGCTTCTACCTTCAGTTCTTGATATCTCAGATAATAAT
GAAGATTTTGAGTATTTCTTTGCACTCTTTGAAGGCTTGGAATCAGTAAA
ATCTGAACATCTCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAA
AGGCTGTTTCTCGTGAAAAATTGTATGGTATTGGATATATTGATATATTT
GAATACCAAAGCATGTTGAAGTatctaaaaattgtttttaaagatGATTT
TTATTGCAATACAGCCAAACAGCTTACAACCCTTGATGAGTTCAAGTCTA
AAGATTATGAAAAAATGTGTAACACTACTAAAGAAAGTATTTTGCAAAGA
CTgattcaagatttgaaaaaggATTTCTATTTTAAGGAATCTTACATTGA
TCTAGTACGTGTTCAGATAGAAAACCTAAAGACGCTACAAGACAAAGGGT
GTCCAAAATCGTATTGGGAGCAGCCAGATGCCATTTTTTATGACGAACAT
ATTGAAGAATTTTTAGAAAGTGATAAAGTGACACTAGTTGTTTctgatga
atttgaaaatgacTTGGAATATGCAAATTCATGGATTAATGATTATGCCG
GACCACATCTTCACAGAGGTTATAGTTTCAGTGCTATCGCAAGGTTATCC
ACAGAAGGCACAGTTGAAGTTATActgcaaaaagaaaaacatatatATGA
AAGGAAACGAGATGGATATTTTAGACTGATGAATGAATTATTTGAATTGG
AAACTTTCTTGCAGTCTCCAAAGATAGTGCGTattggcacaaaaaggaaa
tacAATCTCagagaacgaaaaagaaaataaatcttaTTGTAGAAAATCGT
ATCTTATCGtagaaaattttcttaattcatCCAATACCTCACTTTTTCAA
TTGTTTGAGTGAGATTAGGTAGATAATTCATAAAATTGTAGCAAGACCgt
aattattttattaatttctaggaatttttcaaaattttgataaaaactta
actaaaaatttttttaacatgttTCATGTGTTTTACCCTTTCTGGTATTG
CCAAAAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000047XLOC_000047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000091-exon-sc0000001-1491911889:1843842..1846701TCONS_00000091-exon-sc0000001-1491911889:1843842..1846701Clytia hemisphaericaexon
TCONS_00000091-exon-sc0000001-1510915933:1843842..1846701TCONS_00000091-exon-sc0000001-1510915933:1843842..1846701Clytia hemisphaericaexon
TCONS_00000091-exon-sc0000001-1575043694:1843842..1846701TCONS_00000091-exon-sc0000001-1575043694:1843842..1846701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1843842..1846701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.848207	0.424323	0.365176	0.358149	2.37568	1.47657	0.856487	0.67851	0.664365	0.512072	0.887718	1.04021	0.391114	0.568345	0.295976	0.343151	0.213348	0.305765	1.14934	0.451463	0.798978	0.72174	1.44026	1.51543	0.411254	0.444382	0.32994	0.682938	0.843099	0.982089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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