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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000090 ID=TCONS_00000090|Name=TCONS_00000090|organism=Clytia hemisphaerica|type=transcript|length=2107bpRun BLAST on NCBI protein sequence of TCONS_00000090-protein >TCONS_00000090-protein ID=TCONS_00000090-protein|Name=TCONS_00000090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp QCICTMMTLIREVAKEHVIQYVLVMLDDLLLVDKDRVKIIHQTAAKHNFNRun BLAST on NCBI transcript from alignment at sc0000001:1826493..1838565+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000090 ID=TCONS_00000090|Name=TCONS_00000090|organism=Clytia hemisphaerica|type=transcript|length=12073bp|location=Sequence derived from alignment at sc0000001:1826493..1838565+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1826493..1838565+ >TCONS_00000090 ID=TCONS_00000090|Name=TCONS_00000090|organism=Clytia hemisphaerica|type=CDS|length=12639bp|location=Sequence derived from alignment at sc0000001:1826493..1838565+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000090 vs. Swiss-Prot (Human)
Match: VATH (V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1) HSP 1 Score: 371.703 bits (953), Expect = 4.106e-120 Identity = 202/403 (50.12%), Postives = 271/403 (67.25%), Query Frame = 3
Query: 3 QCICTMMTLIREVAKEHVIQYXXXXXXXXXXXXXXXXKIIHQTAAKHNFNVWPPLKNLLNRDDQIIMHVASRLLAKLSTFSKTKMPDSDLVFYLTWLKGQFS---------------VPSND---YLQSAAECLQWVLRVDEYRLPFVNADGXXXXXXXXXXNLGFQLQYQFIFCIWMLSFNVEIAGRIGENNVIPVMADILRTSQKEKVTRIIIATFRNLLEKP---EQSKNACVALIQSKLLPVFNVLINKTWGDEDIKEDLEFISEKLSHSVQDLSTWDEYVAEVKSGRLEWSPVHREEKFWRENAIKICEKNYELLKILVKLLQFNTDPIIQAVACHDLGEFIRHYPRAKPAFDALGCKELVMQRMGHENEQVKYEALLAVQKLMVHNWEFLGKQVKIE 1148
QC T + L+ + KE +QY+L M+DD+L + RV I A WP +LNR D +H+A+R++AKL+ + K M SDL +Y W+K Q S V S+D Y+Q A CLQ +LRV+EYR +V ADGV+ ++ VL + GFQLQYQ IF IW+L+F+ ++ + N+IPV++DIL+ S KEKVTRII+A FRN LEK E + +A+IQ K+L L + + DEDI ED++F+ EKL SVQDLS++DEY +E+KSGRLEWSPVH+ EKFWRENA+++ EKNYELLKIL KLL+ + DP + AVA HD+GE++RHYPR K + LG K+LVM M HE++QV+Y ALLAVQKLMVHNWE+LGKQ++ E
Sbjct: 72 QCAKTFINLMTHICKEQTVQYILTMVDDMLQENHQRVSIFFDYARCSKNTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSE 474 The following BLAST results are available for this feature:
BLAST of TCONS_00000090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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