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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000088 ID=TCONS_00000088|Name=TCONS_00000088|organism=Clytia hemisphaerica|type=transcript|length=3055bpRun BLAST on NCBI protein sequence of TCONS_00000088-protein >TCONS_00000088-protein ID=TCONS_00000088-protein|Name=TCONS_00000088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp MYVTRKLVRNVLPFACKRRLSTKTFPTSAEVVIAGGGIIGTSIAYHLAELRun BLAST on NCBI transcript from alignment at sc0000001:1800238..1815356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000088 ID=TCONS_00000088|Name=TCONS_00000088|organism=Clytia hemisphaerica|type=transcript|length=15119bp|location=Sequence derived from alignment at sc0000001:1800238..1815356+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1800238..1815356+ >TCONS_00000088 ID=TCONS_00000088|Name=TCONS_00000088|organism=Clytia hemisphaerica|type=CDS|length=38928bp|location=Sequence derived from alignment at sc0000001:1800238..1815356+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000088 vs. Swiss-Prot (Human)
Match: PDPR (Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2) HSP 1 Score: 351.288 bits (900), Expect = 8.042e-105 Identity = 244/729 (33.47%), Postives = 389/729 (53.36%), Query Frame = 2
Query: 92 VRNVLPFACKRRLSTKTFPTSAEVVXXXXXXXXXXXXYHLAELGWKDIFILEQGTPGCGTSWHAAGNVISLRGNYIDTQNVLYGQSLFQQFEKEYGV--GYKKCGSLSLAQTDERAKFLRRMEVMVNGFGGECYLVSPAEAQRLNPHIQINDIKLGLFSPNDNVVNPTDCINAFLNGAKKNGSTXXXXXXXXXXXXXXXXXXTHVQTNKGTIKCDFFVNSAGLWARELGQKSDIPVQVPLHACQHFYIVTKPCG--VDSMMPITRDYDSFVYTREWSGGFLTGGFEPKPLPCFHDNIPEKFEFQLLDENWEQFMPLMEGISNRYPLIETAEVRSFVNGPESFTPDYHPHISKSMELDNYFIAAGMTSFGIAFSGGTGRVLAELITYRESPNYDPYTADIRRLEPGCNNKKRCRTGALNTLENTFLLKYPDKCYASPRNILTSSVHTHLTEHGAVWIKDYGWEIPTYFKEETQD----EFPGSFGRPAWLQNVQDEIKAAKTSIGIVDLSSQSVFKLMEIKDGSLLDVLEEILPSDTFNAL-RAGKTSMVTPVINKHGRCVAKATVNKLSDSILLTTDPVSHNYLNTMLEELLHKDKHSKRVILQNVTDAYGCFGVVGPQTRSLLESLIPPPDNGMVKHLEG--CEVLDVGYASNV-IIHPAAFGD-GFHLLIPTNQCQGLYQELMTEGISYGIRNIGHYAWDSLRVQKGIGKVPNEI-GLNTPSEVMKQ 2236
RN A R ++ PT A+VVI GGGI GTS+AYHL+++GWKDI +LEQG G++ AG + + R I+ + Y L+ Q E+E G+ GY + GS+ LAQT +R L+R+ +N G ++SP + L+ + ++D+ + P D VV+ D A + A +NG ++ + V V + +VT V+T+KG I+C +FVN AG WA ELG ++ PV +PLHAC+HFY++T+P + S P D D +Y R W GG L+GGFE P P F + + E Q L E+W+ F PL+ + R P +ET E+ VN PE+FTPD + +S + YF+ AGM S G++F GG G+ LAE + + P+ + + D++R +++ R + + + LK P + + R + TS ++ L GA W++ +G+E P YF +D E +F +P W V+ E+K K ++ ++D+SS + F++ D + L+VL+ + +D + T M+ C + A +NK S ++ TD H + L++ + KD + ++L++VT Y ++GP+ +L L P H C+ + VGYA+ + ++ G+ GF L IP +Y E+M+ G YGIRN G+YA SLR++K +I L TP E ++
Sbjct: 25 ARNSTSAAEARSMA---LPTQAQVVICGGGITGTSVAYHLSKMGWKDIVLLEQGRLAAGSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLISLKRINAGLNVIGIPSEIISPKKVAELHHLLNVHDLVGAMHVPEDAVVSSADVALALASAASQNG-VQIYDRTSVLHVMVKKGQVTGVETDKGQIECQYFVNCAGQWAYELGLSNEEPVSIPLHACEHFYLLTRPLETPLQSSTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTEG-KNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLEIMKLVNCPETFTPDMRCIMGESPAVQGYFVLAGMNSAGLSFGGGAGKYLAEWMVH-GYPSENVWELDLKRFGALQSSRTFLRHRVMEVMPLMYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQA-LEVLQYLFSNDLDVPVGHIVHTGMLNEGGGYENDC-SIARLNKRSFFMISPTDQQVHCW--AWLKKHMPKDSN---LLLEDVTWKYTALNLIGPRAVDVLSELSYAPMTP--DHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDINNLTTPLECGRE 738 The following BLAST results are available for this feature:
BLAST of TCONS_00000088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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