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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000075 ID=TCONS_00000075|Name=TCONS_00000075|organism=Clytia hemisphaerica|type=transcript|length=276bp
ACTTCACGTCAAGAAAGTTGAAATCAAAGTACAAGGGTCTACCGCATTCA
CAACTCAACAACCGTGGATATATTCCGGAACGGTTCGGCAAAATATACTC
TTTGGTAGAGAGTACAAAAAGGACTTGTACCAAACGGTCATCAAAGCCTG
TGGAATGCACACTAACGTTATAATTGTCCTGAAGATGAACAAGAGCAGGA
GGAAACCAACCACCATTCGCCGACGCTTTCAGCCATCGCAAATTCTCATC
AATCGTACCCAAAGCCAACAGacagg Run BLAST on NCBI transcript from alignment at sc0000001:1662722..1667190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000075 ID=TCONS_00000075|Name=TCONS_00000075|organism=Clytia hemisphaerica|type=transcript|length=4469bp|location=Sequence derived from alignment at sc0000001:1662722..1667190+ (Clytia hemisphaerica)
ACTTCACGTCAAGAAAGTTGAAATCAAAGTACAAGGGTCTACCGCATTCA
CAACTCAACAACCGTGGATATATTCCGGAACGGTTCGGCAAAATATACTC
TTTGGTAGAGAGTACAAAAAGGACTTGTACCAAACGGTCATCAAAGCCTG
TGGAATGCACACTGTAAGATTTGATATTTTGTTACATGATTTTAGagtaa
gaccatgttcagacgttacggttccgttccgttccgttccgaaacggttc
tgaaacaagtgtgaacgtcaaaattcgaacctcgaaaaagaagacgttac
aaagcaaaacaaatagaaacggtttcgctccacttttttcatcggaacgg
aactgctccgttttctcgCTCAGAAACTTttcgaaaccaatatgaacaaa
atcataccggaacgaaacggaacagtaacgtgtgaacatggccTAAGGAT
AAGGTCAGGATGGTGCAGTAGCCTAATAACTGTGGCGCCAAGCGGGAggt
ccgggttcgattcccgaaAGTGTCTTTGTCTTATATCCCTCCATAATCTA
TACAGCTCGTGACCATAGCAAACTTAGTTCTCTATCTAGTTCCAATCTAT
AAATGTAgtacccactgacctttatataccctgtaccaagcttctcaatc
ccagccaagcaatcTTTAccaatctttgatcggagttttttgacaATTGG
TACCCTACTGTTGGTACCCAAttggcggcactactcgatagcggtgtaaa
tgcatcgaaaGCGCTAGGTctatttttcctcaaattcttttgatgatgta
gcggcgtgagacgttaatttttaacattgcaatagcTTCTCCTCGgttac
caattccaaaaaaactccaatcaaagatggcagatattgcttggtcccgg
gttatataaaggtcagtggtggTACCACAGTGTGAATAAATCACTGGTCT
TCGGCACCCCATGTTGCGCCGTGTTTGTTTAACCACAAGTGAGTTAAGAC
TTGCCAAAATAATCTTACTATCGGGCCATATAGGATAAGGTAATGTAGCT
TCTCAGCTACGGAAATGGCTAATTGATTGATAAGGTTAATACGCTTTAAC
GTTAAGGTTGTTTTCTGAGCTTTTAAAAGTTGCGGAGATCGATGGTCATA
AATGACActaaaaccttattttttatttgtttgtatTATATTCGAAATCC
CTCTTTTATTTGAATCAAGTCTAAGAACATCTGATGATTAGAAGAtattg
tcaaaatatttttaaaattggttgaagattttttaaatcaacttGAAAAG
GACACTACTGTTAGAGGTCGAAGTATCGTTTAAAAACACATTGTTtggct
ttttggacctacttggaggtcctatagaatttaacctgtgttcgtccgtc
cattcgtccgttcgttcgtccgttcgtctgttaccaacttttctcgggat
tgaatcataggaattttgtgatttttggtacaaggtgcaaaatggtgatt
accaaaatgtgacggagctcgatgtaagaaataagaaaaaaatttgggga
gGGGgccaaaatggccaaaaatagggtttttggactttgtgaaaagtccg
tttattagtttttcctgattttttataCAAAGACGTAAAATTAAATTGCT
TAATatgaaaaacttcatttttcgaaaataatatttttggcaccaacttg
caaaattttaaattattcagttttttttgcTACATTGCCTTcattaaact
tttattattcgtcttataaacaggtaggtccataaaagtatcgcttgttt
ttctggaaaaacccatTTCAACAAATATTATTCATCAAAAGCCTTCATTc
gcttatatataaaaacaacACCAGTGTTGGAATGAGCTTGAGTTCTAATa
agaccccggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNcgaggtgacgggtatgtccgagccgaaaatcga
aaatcgaccctttgagagacaaaattttgttgattttgggaccctttgag
agactttttcctaaattttggtccattttttccaaattttggtttgattt
tcaccaaatttttgTCNATTCGTCTATCAAAAACACAGCGTTGATACGAA
GGTATGActaatttatttgataaataaTATTGTTACTGGTATTGAAATCT
AATCATGTCAACAAATATTATTCAGCAAAAGccttagacgatgctatcgt
ccgtattaTATATTAtcatgatataacatagtttgtatattataaaacgt
aatatgttgcgcGGCGGAAAATAAAGTCTGTGATCCACGTTTGTtcctta
gatgaaactcgtcttagactaagTAGTCTACCAAAGCCTTCGTTcgctta
tatataaaaacatcACCAGTGTTTGAATGAGCTTAAGAGCTCTTATAAGA
CACTTCActattggtcatttgaagtaatggAGTTAACACGTTTTAAGAAA
AAGTAGCaatattgttttattacaggttaaagGCCAactaaatcaaataa
gagcttgtaaaaactccgtCTTGTTCCcaacccagccggcacacaacgtt
gttttaacgttcaaataacgttatttggacctTATGAAtgatggacgttg
ttttgacgttgtttgCCGTCTGGGAAGTGTTATGAGAGAAAAAAGTTGTC
ACTGTATAAATTTTGTTGagttgataaaataaaaaaaatctcccTTGACT
CCTTACAGTATTAAATGGGTGTTACTCTCTTTGATAATTtcctacacccc
tgtctcacagccttggtggaactttttttctcagtggggataaaaattct
tattaatttcgcatagcgaaagcaTTATAATTAGTTTTCTGCGTTGGCAT
TCGTTCTTCGTGTTCATAGTGCTCCACATGTTGTTCTAGGACATTCTAGA
ATATCCTCccaatacactcttttttttataagaatacactttataagaat
gtccatgatgaaaatggccaaaaattaagaataatgctaagaatatcgtt
atcatggaatttggctactcaagctaagaatgccatttttagagcatttt
cattataaattgccaatcaCCCCCAAGTAAGACTCACTCCTATGCTTGAG
ACAAacgtactaaatgttaaatctagtctgaattaggatcctaacctaag
aatgctgtaagaatactttctcaaaaaagttaagaatatatcCATCATTA
AATGGAtatacaccattcttataaaaaaagcgtatatTCTAGAGATAGTC
TCACGCACAAAGCGTTTCTCAAATGATTCTAGTACGCAAGTTTGAGGTAA
GTGTAACCAAGGGTTTGTTCCTCGTGAAAGCTTTTTATTAATGCTTGAAG
TGTGAAGGCTAAAACTGCTGCTTCATTGAAAAActgagaggaataatcct
tttcaatcggtgattcaagctttcatattattcctgtctctaaagaaggg
tgtcggaattagacgagggatgtcgatattagaccagcTTACGGTAGTGA
Tataaaatggcaatgtttaatttctgatggagcccgattttcgaaaaaaa
tatttttttgggcaaatttggaccaaaaagtgcctaatatgggttttttt
ggactttggggGAATATCACCTTTTATCGTTAATAAGGTAATAGGTAATT
AGTTTTACTAAAATATCTATAGACGATGTATGGCTTTTATTTCCAAGAAG
ATTCTGAGAGAATTATTAACACGCCGGGTAGTAATAGTGTCATATTGCAC
TTAAACTTTTCGCAATCTTTGTGAGTTTTTGACTTCTTAACGAAAGCAAG
TTTTCGACTTCGCCAAACTTCCGCAAAACTATCTGCCCCTTAAagtatat
tagcgagtttatgtatcggaggatatcgagggtaAGTGAAAGTGAGGCGC
TAACCAAAGTCGATAATTGATGTActgctctatatcgcctttgctcacct
agaCAGACGACgctattttgatgtttttaccgtcgtcaaGCAAAAGGGAC
AGCGATTTTGGTAACATGtaaactttgctttataccgtatccttcgattt
atctcgaatacataaagtTCTTTCTTTATAGAAAACAGTCATGTAAACTT
TCTCACTTTCTGAATTTTACCTTTTAAACAAAAGTAGGCTTTTGATCTTG
CGAAATTTCCGCAAAACTATCTGTCCTCTTTctaacatatttttcttttt
cgacaGAACGTTATAATTGTCCTGAAGATGAACAAGAGCAGGAGGAAACC
AACCACCATTCGCCGACGCTTTCAGCCATCGCAAATTCTCATCAATCGTA
CCCAAAGCCAACAGacagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000075-exon-sc0000001-1491911889:1662722..1662884 | TCONS_00000075-exon-sc0000001-1491911889:1662722..1662884 | Clytia hemisphaerica | exon |
| TCONS_00000075-exon-sc0000001-1510915933:1662722..1662884 | TCONS_00000075-exon-sc0000001-1510915933:1662722..1662884 | Clytia hemisphaerica | exon |
| TCONS_00000075-exon-sc0000001-1575043694:1662722..1662884 | TCONS_00000075-exon-sc0000001-1575043694:1662722..1662884 | Clytia hemisphaerica | exon |
| TCONS_00000075-exon-sc0000001-1491911889:1667078..1667190 | TCONS_00000075-exon-sc0000001-1491911889:1667078..1667190 | Clytia hemisphaerica | exon |
| TCONS_00000075-exon-sc0000001-1510915933:1667078..1667190 | TCONS_00000075-exon-sc0000001-1510915933:1667078..1667190 | Clytia hemisphaerica | exon |
| TCONS_00000075-exon-sc0000001-1575043694:1667078..1667190 | TCONS_00000075-exon-sc0000001-1575043694:1667078..1667190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1662722..1667190 + |
Blast
The following BLAST results are available for this feature:
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