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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000073 ID=TCONS_00000073|Name=TCONS_00000073|organism=Clytia hemisphaerica|type=transcript|length=1392bp
CTAAGTCCAGGCCAGGGTTTTATTAGACATCAGTAAAAAAGCCTTATCGT
TTTCTGTTATTTTTCATTCAGACTTTCTATTATACATTGTATAGTCGGTT
AGTTCACTTCACTGTATGTAtaacattttttgtaatttcataAAGTTAGA
GAATaataggaaaaatagaaaaaataataataaataacaaaaagtaCTGC
TAATCATAATAAATGCAAGCTTGGGCAGAATGTTTGACTGGTGGATTAGC
AGCTTGCTGTGCTTGTGTTTTCAGCAATCCTTTAGAAGTTGTCAAAACTC
GAATGCAACTCCAAGGTGAACTACAGgctTCCGGAACATACAAAGTACAC
TACcgaaatttttttcatgcatTTTACACTATTGGAAAGAACGATGGAAT
ACTTGCATTGCAAAAGGGACTGGGTCTTGGGATGACTTATCAATTCATTA
TGAATGGTATAAGACTTGGAACTTTTCAACAGATTACAAATGCTGGCTTG
ACGAAAGATGACGAAGGAAATCTCAGTTTACCCAAATGTTTAATTGGTGG
TGCAGTCTCTGGTTGCCTTGGAGCTTTTGTTGCAAGTCCTTCATATATGC
TCAAAACGCAACTTCAAGCCAAAGCAAACACAGCGATTGCAGTTGGTACA
CAACACGATATTCAGAGCGTCTCATCAACACTAAAAACCATCTTCCAAAA
CCACGGTATCACTGGTTTATGGCGCGGTGCTTCCGGTGCAATGTTACGCG
TGACGTTTGGGTCAGCCTCCCAGCTAACAGCCTTCTCTAAATGCAAAGAG
AAGATCATAAAGAGTAAAGTTTTCGAAGAAGGAAGCCTCATGATCCCCGT
CGCGTCGAGTATGTCGGCAAGTGTCGTGGTTGTCATGGTAATGACGCCTT
TTGATGTCGTTTCTACACGGTTATATAATCAGCCGGTATGTAAGGAGACT
GGAAAAGGTTTAATGTACAACAATGTCTTTGATGTCTTTCGTAAGATCTT
CAAGACGGAAGGTTTTGTTGGATTCTACAAGGGTCTGGGTCCGCATTACT
TTCGTGTGGGACCGCATACAATTTTAAGTCTTGTCATTTGGGATAAATTT
CGACAAATGCTAATGAAGGAACCTTGATGCACGTTTTATGTTTGTACGTC
ATTTTCTAGGACAGAAAACCACTTGTATAGGTATAGGCTAGATAGTCGAG
TAGCATGACTTCTTAAATTTATATTCTTTCGGCTTATTTTGAATGCTCTA
TTTTTTTAACGAGTATTTAGTTATTGTACATAAAATAGGACCAATTTTAG
atcgaaaatattttctttaccCAGTGTCATTAGACCAAAGAAGTTTATAA
TGTCGCTTAAGAATAAATTGAAGTGGTGAAATCTCTaactca Run BLAST on NCBI transcript from alignment at sc0000001:1638692..1646962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000073 ID=TCONS_00000073|Name=TCONS_00000073|organism=Clytia hemisphaerica|type=transcript|length=8271bp|location=Sequence derived from alignment at sc0000001:1638692..1646962+ (Clytia hemisphaerica)
CTAAGTCCAGGCCAGGGTTTTATTAGACATCAGTAAAAAAGCCTTATCGT
TTTCTGTTATTTTTCATTCAGACTTTCTATTATACATTGTATAGTCGGTT
AGTTCACTTCACTGTATGTAtaacattttttgtaatttcataAAGTTAGA
GAATaataggaaaaatagaaaaaataataataaataacaaaaagtaCTGC
TAATCATAATAAATGCAAGCTTGGGCAGAATGTTTGACTGGTGGATTAGC
AGCTTGCTGTGCTTGTGTTTTCAGCAATCCTTTAGAAGTTGTCAAAACTC
GAATGCAACTCCAAGGTGAACTACAGGTGAacatctttcattttttaagc
tACTATCTGAGTCATCATGGCATGACCCCCCCCCAGCCCGCAGGGGGGGc
tacaaccaaaatcttcctgaaaaaggctggggctggattttttttaaatt
tcagggggtacctatgaactctgggggtatctaacttttatgtagtaagg
tctgggggcttgggaactatattttatcttgcttttatctaactatcatt
attctttttaattgtaaaattatacaattttttcatttcttgacatatac
tcaagtcacagggggtacctactaacgtctgttgttagggggtacctaaa
attcagggggtacctattttcttagggggtacctaaacccctggtccatg
ccatggTCATAACTTGCTCTCAACAGTTTTCATTATTCTTCACATTCTTT
CAGTACTTATATtgctacacattttttataagcacctATGTTCTTAAGGG
ctcaaatttgccaaatttttcactctctcgtaaagtaaaagctttttaaa
taatctaaccatggcaaacgaTACCCCTTGACCCAATTAgcaaaaatttg
gtaaaatataAGGGGTGGCCAAAGcaaatctttcagaaaatgagctagaa
tgctaagcaaccccagggctgacccgaaaattggagttgcttactTACAA
AAAAGTGTGTATAGATTGACTGTCATATTCTTCTTTCCTtcctttaaaac
tttttttatcttcctttgttgttttttttcaggctTCCGGAACATACAAA
GTACACTACcgaaatttttttcatgcatTTTACACTATTGGAAAGAACGA
TGGAATACTTGCATTGCAAAAGGGACTGGGTCTTGGGATGACTTATCAAT
TCATTATGAATGGTATAAGACTTGGTAAGTTCTTCATTATCATTTTCact
ttgattgaaaatttggaaactaTGAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT
ATAACTTGACAACtacttgaccaaacttaaaaagttataccgcaaaattt
aagttagcatgtcctctttctaataaaagtggttttgagtctaaacaaga
cttcagtggctcgccaaacgtccaaagttttttctgctgcacccggtata
tagtcaaagaagtattgaaccttcaactattcaaaaaatgttataaacaa
aaagagacaaaacaataccaacaagaggacacaacaacacaacatgcCCA
GGATGAATATTCATAAAATGGAAACTAGGTATGTGATATCAAATGATGAC
AAAAGATCTAAACTATTTGTACATAATTCTGATGGAACAGAAAAACAGAA
ATGGGACAATGGTGTATTCTTCGGAAGTATCTAAAAAGCAAAAATGCACA
GCATGATCTAAATCGACCAAAAGGAAAGAAGCAACTCAATGcgagaaaaa
gtaaaaataaacacaaataaaagTGACTCAGTATGAATCAATTTAATATA
TTCAAAGAAAACACAAACTCTGTTCTTCAGTTTTCANAATcaattaaata
tattcaaagaaaacacaaactctgttcttcagttttcaacctacatagga
tttcggccattttcGAAAATATCCTCCCTAATGATATAAACAGGGTATTG
TAGATAGGCCTAGCAATGTTGATCAGGCATCACCACAGATGAGGTCGTAA
AAATAAAAgtgtttctttgaattattataACGCGCGCAAAAgtataaaaa
caaactcaaaCATAAAACCTACGGACCTGCCGAGGATACCAAAAAACTAG
CTAGAGAAGTACTACCCACTGGACAAAGTTGCCACATCTTTGACCCGTTC
TGCCACTAACGTTGCAGATAATACATTCgaagataaagaaaaaaacactt
gaaGTAGACTGCCACCATCTATGACAAGGGAGAAGAAGATTGAAAGGATG
GAAAAAAGCatgagaattttttgaaaagttgggtGATAGCCCGGTTCGAT
GCCTCTTATCCCCGTGGCCGCTCAGCCCAAAAGCTGGTGAACGACTGCAT
TTAAACTGAGTTGAAACCTTGAAAATTCAGAACTGTGACGTGTAATGACT
CTACGCAGACTAAGATTGAGTTTACCAACTGTAGCGCCTTGAGCACGCAT
TCTTTGAATAAATATGTGGGATTTGTCTCTCAAGTCTTCAAATAAAAGAG
TGGATCGAGCTATTCTCAAAAACTCACCAACAAACgaagaataaaaaatg
gattCTGGCATATTACTGTCAATGTGAGGCATATGAACAAGAGAAAAAGG
AAAGGCATCGCGCTTGTCAAACAACTTGTAAACAAAAACCCCGTCTTTGA
TGGAAATGTCAAGGTTAAGGGATGAAGCATGAGATCCTGAGTGTTCAACT
TTGAGTTCAAGTTCATCTGGATAGATTTCTCTATATACTGATTCGAACAT
GTTCCCATCGTTTACAGCACAGAGATCATCAATGAATCGTTTGGTTGAAT
GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCtcgatttcctgattttccaattcggaaaaattggattatcgag
aaaatttttccgacttggagctctcccgcatttttgcaaggcaaagttga
cagctatgcgAGCCTTCACTTTATCTTGTTCAATCAACTGGGTCATATAT
CTATGTTCGTATTGATATAAAAACAAGTTAGCCCAAAATGGCGCTGGATC
AATGCCCATTGGGATACCTATGACCTGACACATGACAACATTGCCAGCTT
TGAAACAACAATTTTTAATCAGATGTTTGACAGCGGTTttcaaagaactt
tttgaaaaggaaatAGACGATTTAGGTTTAGTTCTCGACCAGTAAGCTTT
GTCGTTCTGGGAGATGGCAATATATTTCGAACCACCTGCATCAAAAACAA
AGTCAATAATCCCTGCCAATTCTTTAATAAGTTTGTCATGAGGGATCTTT
GTGTAAAGAGTACTGAAGTCAAAGGTGGAAATAGACTTAgcattcttctt
tttattgataCGGTTTAAGGACTCCAAAACaggattgaaattttgaagca
CCCAAAACTTATTGTAATTACTCAAGAATTTTGACTTTGTGTGAAAATTT
TCTATCTGTCgataaatataatatatatttcgTTCTTTCCTGTGCGAACG
GCTGCACGGCATTtcggactttaggtgtcgaaccgggttctgggcctact
ttctttgttgttgaaaatttgtgttttttgatacttgtcttttgtcgttt
gtcttgttcttgtctttttgaacttgtttgttttgtctgttgtttaaccc
cttttttgtttctttgtatttgtgtgcgagtttttgttcatttttctatg
tttgttagtttgtttggaccgccggtcggttcagggttatggaatctggg
ggaggctgagtgttggacgtccttaaaacatgtttaaagccgctgcgcct
gtcgcaagtcggggactccagattgcatttgttgggtttttgagtggttt
ttggtgtttgtgttNNttatgtctattggtttgttggttctttttcgcat
aaaattctcatttcttgacagaatgtttgattggtttgatttatatattt
agaaaaattcaaaaaaaatgtaaaaaaacttataattaccttaagggaaa
aaACCTTGCGGTTTTTGCGGATTTAGGCCCAAACcgtaaaattaagttcc
cgcaaaatttttcaaatgcgaaaaacaaaggtcgaataattcacagtacg
gctctaattttcttccaagtgagaaatccgcaaaattaagttcccgcaaa
tattaaatattaagtcttgaactgcgaaccgcaaaaattagttcccgcaa
aaaatagttctcttaaggtataaaaatattagtccctttttatgtttttt
atctttattttatttagtattttcaacactttctctccttgaggtcagcg
ttgaaaatactaaataaaataaagatgaaacataaaaagggactaatatt
tttataattatacgtttttttacattttttttgaatttttccaaatatat
aaatcaaaccaatcaaacattctgtcaagaaatgagaattttatgcgaaa
aagaaccaacaaaccaatagacataaagttttaaaagtttatatattttt
caaatgtgcgccaaatatgaattggcatctttggtgaaaatttgacttca
ttgatgacgtcatcaccaccTGATTATTTTCTGCCCACCAaactgaagct
ctaaagggatgtgtggaAATGAATGATCTGGGGAATAAGCTATCTCAATT
TTGTATAGACCTCACATTGCTTCAGAGAACTGGGGAACATAGAATGGCTG
ATATTGATTCCATTTTAGAATTGTTGAATGAAATGGCATTCCTGTTAATT
TACCATAGGAACTTTTCAACAGATTACAAATGCTGGCTTGACGAAAGATG
ACGAAGGAAATCTCAGTTTACCCAAATGTTTAATTGGTGGTGCAGTCTCT
GGTTGCCTTGGAGCTTTTGTTGCAAGTCCTTCATATATGGTGATTTTTTC
TAACTATTCGATATTTTCTCATTTACTTTACCCGCTTAAAAAATgtcttt
atttttattgataagTATGAGTGActttatttttaaagaactttttaggT
AAAAAGTAAGCTACTGACATCATTAACGACTACTATCTGCGACATTGTGG
AGGTCTACGATTCAGACTAGGTCAAAAGTCATTATATCCcaaaacatgtt
ttttctttcatttaatTATGTTACCTAGCTCAAAACGCAACTTCAAGCCA
AAGCAAACACAGCGATTGCAGTTGGTACACAACACGATATTCAGAGCGTC
TCATCAACACTAAAAACCATCTTCCAAAACCACGGTATCACTGGTTTATG
GCGCGGTGCTTCCGGTGCAATGTTACGCGTGACGTTTGGGTCAGCCTCCC
AGCTAACAGCCTTCTCTAAATGCAAAGAGAAGATCATAAAGAGTAAAGTT
TTCGAAGAAGGAAGCCTCATGATCCCCGTCGCGTCGAGTATGTCGGCAAG
TGTCGTGGTTGTCATGGTAATGACGCCTTTTGATGTCGTTTCTACACGGT
TATATAATCAGCCGGTATGTAAGGAGACTGGAAAAGGTTTAATGTACAAC
AATGTCTTTGATGTCTTTCGTAAGATCTTCAAGACGGAAGGTTTTGTTGG
ATTCTACAAGGGTCTGGGTCCGCATTACTTTCGTGTGGGACCGCATACAA
TTTTAAGTCTTGTCATTTGGGATAAATTTCGACAAATGCTAATGAAGGAA
CCTTGATGCACGTTTTATGTTTGTACGTCATTTTCTAGGACAGAAAACCA
CTTGTATAGGTATAGGCTAGATAGTCGAGTAGCATGACTTCTTAAATTTA
TATTCTTTCGGCTTATTTTGAATGCTCTATTTTTTTAACGAGTATTTAGT
TATTGTACATAAAATAGGACCAATTTTAGatcgaaaatattttctttacc
CAGTGTCATTAGACCAAAGAAGTTTATAATGTCGCTTAAGAATAAATTGA
AGTGGTGAAATCTCTaactca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000073-exon-sc0000001-1491911889:1638692..1639017 | TCONS_00000073-exon-sc0000001-1491911889:1638692..1639017 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1510915933:1638692..1639017 | TCONS_00000073-exon-sc0000001-1510915933:1638692..1639017 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1575043694:1638692..1639017 | TCONS_00000073-exon-sc0000001-1575043694:1638692..1639017 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1491911889:1639774..1639915 | TCONS_00000073-exon-sc0000001-1491911889:1639774..1639915 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1510915933:1639774..1639915 | TCONS_00000073-exon-sc0000001-1510915933:1639774..1639915 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1575043694:1639774..1639915 | TCONS_00000073-exon-sc0000001-1575043694:1639774..1639915 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1491911889:1645800..1645930 | TCONS_00000073-exon-sc0000001-1491911889:1645800..1645930 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1510915933:1645800..1645930 | TCONS_00000073-exon-sc0000001-1510915933:1645800..1645930 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1575043694:1645800..1645930 | TCONS_00000073-exon-sc0000001-1575043694:1645800..1645930 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1491911889:1646170..1646962 | TCONS_00000073-exon-sc0000001-1491911889:1646170..1646962 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1510915933:1646170..1646962 | TCONS_00000073-exon-sc0000001-1510915933:1646170..1646962 | Clytia hemisphaerica | exon |
| TCONS_00000073-exon-sc0000001-1575043694:1646170..1646962 | TCONS_00000073-exon-sc0000001-1575043694:1646170..1646962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1638692..1646962 + |
Blast
BLAST of TCONS_00000073 vs. Swiss-Prot (Human)
Match: S2535 (Solute carrier family 25 member 35 OS=Homo sapiens GN=SLC25A35 PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 3.296e-86 Identity = 154/294 (52.38%), Postives = 196/294 (66.67%), Query Frame = 3
Query: 228 ECLTGGLXXXXXXVFSNPLEVVKTRMQLQGELQASGTYKVHYRNFFHAFYTIGKNDGILALQKGLGLGMTYQFIMNGIRLGTFQQITNAGLTKDDEGNLSLPKCLIGGAVSGCLGAFVASPSYMLKTQLQAKANTAIAVGTQHDIQSVSSTLKTIFQNHGITGLWRGASGAMLRVTFGSASQLTAFSKCKEKIIKSKVFEEGSLMIPXXXXXXXXXXXXXXXTPFDVVSTRLYNQPVCKETGKGLMYNNVFDVFRKIFKTEGFVGFYKGLGPHYFRVGPHTILSLVIWDKFRQM 1109
+ L GLAAC ACVF+NPLEVVKTRMQLQGELQA GTY+ HYRN FHAF TIGK DG+ ALQKGL + YQF+MNGIRLGT+ G EG S + GA++G +GA++ SP YM+KT LQA+A + IAVG Q+ Q + L I Q HG+ GLWRGA G + RV GS++QL FS K+ + + ++F S + + ++M + + VV+ M PFDV TRLYNQP + GKGLMY + D + +TEG G YKG+G YFR+GPHTILSL WD+ R +
Sbjct: 2 DFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQFLMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQKHGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMAPFDVACTRLYNQPTDAQ-GKGLMYRGILDALLQTARTEGIFGMYKGIGASYFRLGPHTILSLFFWDQLRSL 294
The following BLAST results are available for this feature:
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