Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000072 ID=TCONS_00000072|Name=TCONS_00000072|organism=Clytia hemisphaerica|type=transcript|length=1871bpRun BLAST on NCBI protein sequence of TCONS_00000072-protein >TCONS_00000072-protein ID=TCONS_00000072-protein|Name=TCONS_00000072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp LDLRSFPRPQNKNTLQYKMADKKSKKRRKGDEDQNPTKDETEVAKYLRFNRun BLAST on NCBI transcript from alignment at sc0000001:1630935..1638159+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000072 ID=TCONS_00000072|Name=TCONS_00000072|organism=Clytia hemisphaerica|type=transcript|length=7225bp|location=Sequence derived from alignment at sc0000001:1630935..1638159+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1630935..1638159+ >TCONS_00000072 ID=TCONS_00000072|Name=TCONS_00000072|organism=Clytia hemisphaerica|type=CDS|length=9477bp|location=Sequence derived from alignment at sc0000001:1630935..1638159+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000072 vs. Swiss-Prot (Human)
Match: SEC62 (Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.912e-20 Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 529 LEVNDIQEFFDSDEEFYVWIFDPISWKTFXXXXXXXXXXXXXXXFPLWPESVRDYSWYLSVAGAIFVXXXXXXXXXXXXXXXXXWLGTMGKLHFWLLPNLTAECGFFESFVPAYQY 876 LE +D Q F D +E YVWI+DP+ +KTF++G++LV+ V+ LFPLWP +R +YLSV FV IL+LA+ R I++ ++WL T G+ HFW LPNLTA+ GF +SF P Y + Sbjct: 170 LEPHDDQVFLDGNE-VYVWIYDPVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTADVGFIDSFRPLYTH 284 HSP 2 Score: 83.5741 bits (205), Expect = 4.992e-17 Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 106 PTKDETEVAKYLRFNLPTKKATLFGEKAVYFSGSNAVDFLMDSKWASGKGKSSIEFTHRDSVADYLRRMLNCQLFSRV 339 P+K+E VAKYLRFN PTK + G + YF S AVD L+DSKWA K FT R+SV DY R+L Q F R Sbjct: 17 PSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNRLLKKQFFHRA 94 The following BLAST results are available for this feature:
BLAST of TCONS_00000072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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