Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000072-protein ID=TCONS_00000072-protein|Name=TCONS_00000072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0008565 protein transporter activity GO:0005515 protein binding
Vocabulary: Biological Process
Term Definition
GO:0015031 protein transport
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0015031 protein transport
cellular_component
GO:0016021 integral component of membrane
molecular_function
GO:0005515 protein binding
molecular_function
GO:0008565 protein transporter activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 Expect = 4.2E-58 / Score = 196.3 Expect = 0.085 / Score = 11.0 Expect = 0.0016 / Score = 17.9 Score = Score = Score = Sequence PF03839 G3DSA:2.130.10.10 G3DSA:1.10.10.10 mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
IPR004728 Translocation protein Sec62 PFAM PF03839 Sec62 coord: 119..310 IPR015943 WD40/YVTN repeat-like-containing domain GENE3D 2.130.10.10 coord: 192..349 IPR011991 Winged helix-turn-helix DNA-binding domain GENE3D 1.10.10.10 coord: 27..191 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 121..165 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 297..350 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..40
Blast
BLAST of TCONS_00000072-protein vs. Swiss-Prot (Human)
Match:
SEC62 (Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1)
HSP 1 Score: 203.756 bits (517), Expect = 2.573e-62
Identity = 134/331 (40.48%), Postives = 186/331 (56.19%), Query Frame = 0
Query: 19 MADKKSKKRRKGDEDQNPTKDETEVAKYLRFNLPTKKATLFGEKAVYFSGSNAVDFLMDSKWASGKGKSSIEFTHRDSVADYLRRMLNCQLFSR-VHVIKTEKKVKKKDEPDKKSEEKAIEEKKSENKKDTKSPKEPNSPKAKKEGKEARKIKKKVKVT-----------LEVNDIQEFFDSDEEFYVWIFDPISWKTFILGIMLVLGVVIVCLFPLWPESVRDYSWYLSVAGAIFVGGILILAILRYIIYGLLWLGTMGKLHFWLLPNLTAECGFFESFVPAYQYT-------VKKEEKKEDKSIDGDDKDKAKESLENEDESEKSENGD 330
MA+++ K+R E P+K+E VAKYLRFN PTK + G + YF S AVD L+DSKWA K FT R+SV DY R+L Q F R + V+K + K E DK E EE K K++ K K + KK+G++ K++ T LE +D Q F D +E YVWI+DP+ +KTF++G++LV+ V+ LFPLWP +R +YLSV FV IL+LA+ R I++ ++WL T G+ HFW LPNLTA+ GF +SF P Y + +KK+EK E K D ++ +S + EDE K G+
Sbjct: 1 MAERRRHKKRI-QEVGEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNRLLKKQFFHRALKVMKMKYDKDIKKEKDKGKAESGKEEDKKSKKENIKDEKTKKEKEKKKDGEKEESKKEETPGTPKKKETKKKFKLEPHDDQVFLDGNE-VYVWIYDPVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTADVGFIDSFRPLYTHEYKGPKADLKKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGN 329
The following BLAST results are available for this feature:
BLAST of TCONS_00000072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
L D L R S F P R P Q N K N T L Q Y K M A D K K S K K R R K G D E D Q N P T K D E T E V A K Y L R F N L P T K K A T L F G E K A V Y F S G S N A V D F L M D S K W A S G K G K S S I E F T H R D S V A D Y L R R M L N C Q L F S R V H V I K T E K K V K K K D E P D K K S E E K A I E E K K S E N K K D T K S P K E P N S P K A K K E G K E A R K I K K K V K V T L E V N D I Q E F F D S D E E F Y V W I F D P I S W K T F I L G I M L V L G V V I V C L F P L W P E S V R D Y S W Y L S V A G A I F V G G I L I L A I L R Y I I Y G L L W L G T M G K L H F W L L P N L T A E C G F F E S F V P A Y Q Y T V K K E E K K E D K S I D G D D K D K A K E S L E N E D E S E K S E N G D W V K V K K D D A E E D G V Q E E V L S 50 100 150 200 250 300 350 Expect = 2.57e-62 / Id = 40.48 Sequence SEC62
Match Name E-value Identity Description
SEC62 2.573e-62 40.48 Translocation protein SEC62 OS=Homo sapiens GN=SEC... [more]
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