TCONS_00000072-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000072-protein
Unique Name	TCONS_00000072-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	350

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000072-protein ID=TCONS_00000072-protein|Name=TCONS_00000072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
LDLRSFPRPQNKNTLQYKMADKKSKKRRKGDEDQNPTKDETEVAKYLRFN
LPTKKATLFGEKAVYFSGSNAVDFLMDSKWASGKGKSSIEFTHRDSVADY
LRRMLNCQLFSRVHVIKTEKKVKKKDEPDKKSEEKAIEEKKSENKKDTKS
PKEPNSPKAKKEGKEARKIKKKVKVTLEVNDIQEFFDSDEEFYVWIFDPI
SWKTFILGIMLVLGVVIVCLFPLWPESVRDYSWYLSVAGAIFVGGILILA
ILRYIIYGLLWLGTMGKLHFWLLPNLTAECGFFESFVPAYQYTVKKEEKK
EDKSIDGDDKDKAKESLENEDESEKSENGDWVKVKKDDAEEDGVQEEVLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000037	XLOC_000037	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000072	TCONS_00000072	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004728	Sec62
IPR015943	WD40/YVTN_repeat-like_dom
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008565	protein transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004728	Translocation protein Sec62	PFAM	PF03839	Sec62	coord: 119..310 e-value: 4.2E-58 score: 196.3
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 192..349 e-value: 0.085 score: 11.0
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 27..191 e-value: 0.0016 score: 17.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40

Blast

[Close]

BLAST of TCONS_00000072-protein vs. Swiss-Prot (Human)
Match: SEC62 (Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.573e-62
Identity = 134/331 (40.48%), Postives = 186/331 (56.19%), Query Frame = 0

Query:   19 MADKKSKKRRKGDEDQNPTKDETEVAKYLRFNLPTKKATLFGEKAVYFSGSNAVDFLMDSKWASGKGKSSIEFTHRDSVADYLRRMLNCQLFSR-VHVIKTEKKVKKKDEPDKKSEEKAIEEKKSENKKDTKSPKEPNSPKAKKEGKEARKIKKKVKVT-----------LEVNDIQEFFDSDEEFYVWIFDPISWKTFILGIMLVLGVVIVCLFPLWPESVRDYSWYLSVAGAIFVGGILILAILRYIIYGLLWLGTMGKLHFWLLPNLTAECGFFESFVPAYQYT-------VKKEEKKEDKSIDGDDKDKAKESLENEDESEKSENGD 330
            MA+++  K+R   E   P+K+E  VAKYLRFN PTK   + G +  YF  S AVD L+DSKWA  K      FT R+SV DY  R+L  Q F R + V+K +     K E DK   E   EE K   K++ K  K     + KK+G++    K++   T           LE +D Q F D +E  YVWI+DP+ +KTF++G++LV+ V+   LFPLWP  +R   +YLSV    FV  IL+LA+ R I++ ++WL T G+ HFW LPNLTA+ GF +SF P Y +        +KK+EK E K     D ++  +S + EDE  K   G+
Sbjct:    1 MAERRRHKKRI-QEVGEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSKWAKAKKGEEALFTTRESVVDYCNRLLKKQFFHRALKVMKMKYDKDIKKEKDKGKAESGKEEDKKSKKENIKDEKTKKEKEKKKDGEKEESKKEETPGTPKKKETKKKFKLEPHDDQVFLDGNE-VYVWIYDPVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTADVGFIDSFRPLYTHEYKGPKADLKKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGN 329

The following BLAST results are available for this feature:

BLAST of TCONS_00000072-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SEC62	2.573e-62	40.48	Translocation protein SEC62 OS=Homo sapiens GN=SEC...	[more]

You are here

TCONS_00000072-protein (polypeptide) - C. hemisphaerica