TCONS_00000068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000068
Unique NameTCONS_00000068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000068 ID=TCONS_00000068|Name=TCONS_00000068|organism=Clytia hemisphaerica|type=transcript|length=864bp
Atctcattttttgtttgtttgaataaaattattcaataaattaaaaaaaa
atattgaaaataaaaaataaaattataaattttcacaCTTAAAAAAAAGT
AGagcaagaaaaaatcaaaaacaaaaacaaaactcgTCCAATCAGAATTA
CGTATATCAAGATCTTGTTGAATACATATCAGAATCTTCAGGATCAGATT
GTCCAAGATCACCTTCAATAATTATATTTTCTTGATTAGCTGCCGTATCT
AAGTCTAGTCTAGTATCTTTATCATCAACAACTTTTTCATCATCTAATGA
AACGACAGATATTTCTTGAAGTTCAGTTTGTCCAGGATCAAAGTCTTGTA
CCTCATTATTTGACACAGGTACCTCTGTATTTTCCTCGCCAACTATTTCT
TCACTTCTTTCATTTGATACGTTATCATTAACAGAATCAGGCACAACTTC
AGCGGATCCACCTTCAGATTCCACAACCTCAGTCAGTTCTGCTACAACTT
CTTCTTGTGGCGTCGGCGTCGGCGGCGGAGGCGGTGGTTGAGTTTCATCT
TCAATCACAGAAATGATTTCCTCAACTACCTCAGTTGCAGGAGCACTGAC
TTCTTCTTCCTCGGTAGAGGTAACAGCCTCTGATATCACAATTTCAGATT
CTACTACTTCATCAGGCTCGTTTTTATCATCTAAAATTTCGACAACACGC
TCTGTGGTTGTTGGTGCACTTGGTGCAAAGAGTTGAGCAATGGAAGAAGC
GGTATGATAATAACTCGTCTCAGCAATGTCAAGTGTTCGCTCGGGGTAAG
ATATAGCAGCAGCTGTTGTTCCAAAGAGTAATCCATACAATGACCTTTTG
ATGGGTCTTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0000001:1500623..1501546+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000068 ID=TCONS_00000068|Name=TCONS_00000068|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0000001:1500623..1501546+ (Clytia hemisphaerica)
Atctcattttttgtttgtttgaataaaattattcaataaattaaaaaaaa
atattgaaaataaaaaataaaattataaattttcacaCTTAAAAAAAAGT
AGagcaagaaaaaatcaaaaacaaaaacaaaactcgTCCAATCAGAATTA
CGTATATCAAGATCTTGTTGAATACATATCAGAATCTTCAGGATCAGATT
GTCCAAGATCACCTTCAATAATTATATTTTCTTGATTAGCTGCCGTATCT
AAGTCTAGTCTAGTATCTTTATCATCAACAACTTTTTCATCATCTAATGA
AACGACAGATATTTCTTGAAGTTCAGTTTGTCCAGGATCAAAGTCTTGTA
CCTCATTATTTGACACAGGTACCTCTGTATTTTCCTCGCCAACTATTTCT
TCACTTCTTTCATTTGATACGTTATCATTAACAGAATCAGGCACAACTTC
AGCGGATCCACCTTCAGATTCCACAACCTCAGTCAGTTCTGCTACAACTT
CTTCTTGTGGCGTCGGCGTCGGCGGCGGAGGCGGTGANTCCACAACTTCA
GTCAGTTCTGTTACAATTTCTTCTTGCAGCGGCGGTGGAGGCGGTGGTTG
AGTTTCATCTTCAATCACAGAAATGATTTCCTCAACTACCTCAGTTGCAG
GAGCACTGACTTCTTCTTCCTCGGTAGAGGTAACAGCCTCTGATATCACA
ATTTCAGATTCTACTACTTCATCAGGCTCGTTTTTATCATCTAAAATTTC
GACAACACGCTCTGTGGTTGTTGGTGCACTTGGTGCAAAGAGTTGAGCAA
TGGAAGAAGCGGTATGATAATAACTCGTCTCAGCAATGTCAAGTGTTCGC
TCGGGGTAAGATATAGCAGCAGCTGTTGTTCCAAAGAGTAATCCATACAA
TGACCTTTTGATGGGTCTTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000034XLOC_000034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000068-exon-sc0000001-1491911889:1500623..1501152TCONS_00000068-exon-sc0000001-1491911889:1500623..1501152Clytia hemisphaericaexon
TCONS_00000068-exon-sc0000001-1510915933:1500623..1501152TCONS_00000068-exon-sc0000001-1510915933:1500623..1501152Clytia hemisphaericaexon
TCONS_00000068-exon-sc0000001-1575043694:1500623..1501152TCONS_00000068-exon-sc0000001-1575043694:1500623..1501152Clytia hemisphaericaexon
TCONS_00000068-exon-sc0000001-1491911889:1501213..1501546TCONS_00000068-exon-sc0000001-1491911889:1501213..1501546Clytia hemisphaericaexon
TCONS_00000068-exon-sc0000001-1510915933:1501213..1501546TCONS_00000068-exon-sc0000001-1510915933:1501213..1501546Clytia hemisphaericaexon
TCONS_00000068-exon-sc0000001-1575043694:1501213..1501546TCONS_00000068-exon-sc0000001-1575043694:1501213..1501546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1500623..1501546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.6183	31.7624	27.3068	26.3733	10.2577	5.85565	15.3619	19.1525	24.9241	21.6048	13.6766	18.0118	12.3196	14.1703	12.4711	16.3633	45.0452	42.849	13.6225	16.5277	21.4347	20.47	34.4107	32.6311	12.6917	12.8712	32.7509	22.6118	31.0242	31.2131
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_Ia_anticodon-bd
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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