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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000067 ID=TCONS_00000067|Name=TCONS_00000067|organism=Clytia hemisphaerica|type=transcript|length=2129bp
aggagaagaaaaaaaggaagatatCTTAAATTTTGAGTATATTCAATATG
TTGCATAAATCGGATAACATTGTCAAATCGAAGAGGCAGTGAAATTGAGT
AAACAAGGGGGAGAAACAGATCCTTTTTAACCACAAGGACACAACCGAGG
GATATACGTAcatcttcttcttcaaaaaaaaacaatcaaaaagagGAAAG
AACAGAAAGAGAAAGAGcAATATCGTAGACCGATCACCATCATCACCAGG
GCTCGACCGTGACCACGAAGACCGTAGATTGATTGATAGTCTTGTTCTTA
ACCAACCATCTTCAACTTATCgtgaacaaaagaaaaattgttcaTAGACT
TCAAATAAAACATGCTAGAACAACAAAACGCTCGGACGTTACTCCTAATC
ACGTCAACAGTCATCTACATGTTGTTAGGAGCGGCTGTTTTCAGTGCTCT
AGAATACGATGAACACATTCgacaaaaatcgaaatatcgGAACATCTATA
ACCTACTGCAAAAGAAATATAACATGACCATCGAAGATGTAGAAGAACTG
GCTAATTATCTTCATAAAAGGAGGTCATTGTACCATTCCCTTGATCCCTG
GTCCTTCGCTGGATCTGTTTATTTCACAAGCGTCACTATTACAACTATag
gtTACGGTCATTCAGTTCCACAAACCATCAGCGGACAGATCTTTTGTATG
TTATACGCGTGTATCGGAATCCCATTGAACTTAACCATGTTTCAAGCTAT
CGGGGAGCGTATGGGCGTCTTTATGTCGTACATATTACGTCGCACGAAAC
GTTGTCTAGGTATGAAGAGTACAGAAGTCAACTTGGTTCATCTAGTGGCA
TTTGGAGTCATGATATGGTTTGTTTTTCAATGTTTGGGTGCAGCTGTATT
CAGTTACTACGAGACTTGGTCCTTTTTCAGGTCCTTATATTATTTCTTTG
TTACCTTGACAACCATCGGGTTTGGAGACTTGGTAGCGTTACAGgaaatc
aagaaaaaacatCCAGATAATAACGGATATTATAATCAAAACTTATACGT
TGCTTTGACAATGATTTTGATATACATTGGATTAACAATAGCATCTTCTG
TTATAAACTTATTGGTTATGCGTTTGATGGAATTACAACAGCCGAAAAGA
CGGCGTAGAAACGTGTCATGGAAAAATGgtacaaaatgtaaacattgcaa
atCGAATAAAGCGACAGCATGTGTAGAAGAAGTAGCGAACAGTGTTATGG
AGAATCATTCCGTGATGATTTTACAAAACTTTGAAGAGGAATTAGAATTC
ACGTCCTACAGACAGGTACATGAAACGGAAGATGGTGGAACACCTCCTta
ttaaaatattcttttgttaCTATTCATCATTATTCCCAAAACTTGAGCCT
TACTAACAGGGGGTTTCAGGAGGTATCCGATTCCGTCATTCCGTCATTCC
GTCAATTTTCCCTGATTTCCTTCCGTCAAACCGACAAATGAGAGCCGTAA
GTCCgcgaatttctttttaatttaagttttttgtTGACAATTCCTTTTTT
TAACTTCCACTTAAATTTCGACCAATATAATGCCAAATTCTATATTTCAG
GACAAAAATTACCCAGCTGAATTCCACAATTAGATCCAAATTTTTAGCAA
ATCCGTTATTCCACTAAAAACAGTAAATTCTCCGCCAACCGTGAAACCCT
TTAATCTCTTACCAGAGATTAATTGAGGTTTTATAAGGACTTTGTAAGAA
TACAATTCTGATTTTGATATCATCTTAATTAAAACAGGAATACCTGATAT
TTGAAACATAAGTTGTGTGGCTGTAGTTTATCAAGAGATAAATATCAGAT
AAAAAAGTGGAAAGGTCTAATGTCTGAAAATTGCACTATTTTTGCAAAAG
AACCTTAGAGTAGCAGCAAAATGAGTTCCGGCAAAAGCTTTTTTTTCCGG
CttgttttttacaaattttctgatATTAAAGTACCTCAAAATTACCTTTT
TCTTGGTACCATGACCCAGATCAAAGAAAGTTtgatattttgtattttga
gcTTGGTTTTCTTTTCATCTTGTCTGTgtttagagaaaaaatttattatg
attgaaaaaagaaatatcaaaatatttac Run BLAST on NCBI transcript from alignment at sc0000001:1488001..1493698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000067 ID=TCONS_00000067|Name=TCONS_00000067|organism=Clytia hemisphaerica|type=transcript|length=5698bp|location=Sequence derived from alignment at sc0000001:1488001..1493698+ (Clytia hemisphaerica)
aggagaagaaaaaaaggaagatatCTTAAATTTTGAGTATATTCAATATG
TTGCATAAATCGGATAACATTGTCAAATCGAAGAGGCAGTGAAATTGAGT
AAACAAGGGGGAGAAACAGATCCTTTTTAACCACAAGGACACAACCGAGG
GATATACGTAcatcttcttcttcaaaaaaaaacaatcaaaaagagGAAAG
AACAGAAAGAGAAAGAGGTATACGAAAGtgcaatattttttaaatagatt
ttttttaacaacTTACCAATAAAAAAAGACTACTCTTCGAATCTTCAACT
AGTTTAAGGAGAGTCGTTATTTCAACATCGGAGTTGGCAACATTCGCTAC
CTTTCCCATAAAGAGGGAAAGATACAGACAATACATATAAAAGAAGTTCA
caatatatcaaaataaaaaagtaagaataattTTTGTGGCTTCAAAGGAA
ACATTGAACGTAAACGCACAAAGATTATTTTTGGTTTTGGTgtaaaaatt
tattcttttttggaccaaatatttttttgcgtgtGCTAAGAGTTTTATTG
GATTATTTTAACACACTGATTCAACATTTCAAACGCCATTGAACTTGGTA
CATTGGTATAAATAAATTCACAGCACTtcaattttctattttgaagcAAT
ATCGTAGACCGATCACCATCATCACCAGGGCTCGACCGTGACCACGAAGA
CCGTAGATTGATTGATAGTCTTGTTCTTAACCAACCATCTTCAACTTATC
gtgaacaaaagaaaaattgttcaTAGACTTCAAATAAAACATGCTAGAAC
AACAAAACGCTCGGACGTTACTCCTAATCACGTCAACAGTCATCTACATG
TTGTTAGGAGCGGCTGTTTTCAGTGCTCTAGAATACGATGAACACATTCg
acaaaaatcgaaatatcgGAACATCTATAACCTACTGCAAAAGAAATATA
ACATGACCATCGAAGATGTAGAAGAACTGGCTAATTATCTTCATAAAAGG
AGGTCATTGTACCATTCCCTTGATCCCTGGTCCTTCGCTGGATCTGTTTA
TTTCACAAGCGTCACTATTACAACTATaggtaagaacatttttttacacc
tgtttatgatattcatgacgtaatgttttatacggaagcacccaaaaaag
aacGGGTGTTTGTNACACCTGTTTATGATATTcacgacgtaatgttttat
acggaagcacccaaaaaagtaCGGGTGTTTGTCACTAATGGAACGGGCTG
GAACGGCATCGCGCGgaaaaagtgagcgtaggagttaggtaagcatGGGA
AGAATTTGTTGGCGACAAGGGCTGAAAAGTTAatgttaatcagcagcctc
tcactaACTTTTGTCCGTTCTCCTACGCAGTTCCTATTCTAGGAAACgtc
cgccgcctttatgtttccgccctctgacatgattaattaacagactagtt
tgctagtctaaatTAACACAATAAAATAGTAGCAAACGCCCTGGCATAAT
ATGAATATTATGAAAAACAGATTATTTCGAGGAGACATTCCCAGGGCATT
CTCTTTTTACCGCTTATCTGTTTCAAATGAACCACTGCCAAGATCTAATC
TACTTCGAAACGATCCTCCCGTACAAGGTTCTCTCGGGAGAAAAGAATAC
CccaatcaaataaataaatcctctcACTGTAAGATATAATGCTCTTTTCC
CATCCCATAATTTTctaacaatagaattcaaaccccaagtcataaaaaac
ctgggaatatcaatccccatcgagttgcAGTTCATTATTTCTACCCCCac
tgtttgaaaaaatactacctGGTCTTAGGAAGGGACTTATTTAAAAACAG
CTGAAGTCTGTCAGAATCTTTACGATCCGTGTAAGCAGGACTCCGAATCA
TTGGTGTAATATACTTGAAAAGCGTCATCCACGCAGTCCTATGAATATAT
ACTGCGATGTCAGACAGCGATTCTTAACAGCACACATTCAAAGTATTTga
gacatgcgcgataaaattatTATCGCCCGTCCTCAAAGGTTGAATTTCAG
AGAAAGCTAAACTATGATGTACACTCGATTTATTATAATGTAAGAGCAGC
TATGgagacattttttaaacttcaatTAATACCTTTAGGAGTCGGCAGCT
CCGTGCCAGAAATCCCGGTCTGCATAATCATGATATGCACCTTTGCAATT
TCTTCCACGgccccaacagctgattggttgaaagtgacatattaactgat
tttacgtcacttacaaccaatcagatattgggtccgtgatgtaatgtcaa
aaGACATTGTTATGGTGCATATCATTAATcagacaaaaaataatttcaaa
ctttgacACCTTGTATGTTTTCCTGTGATGTGACGTATGAACGAAAAGCT
TTTAACTTGATAGCAAGGGGAACTAAAAGCCGATTAGCAATCAGATAAAA
GATCATACCTCTGTCTGACGTCAATGGTCTCATCGCGCAGCCTTCTGTTT
ACAGTTCCATGTTACTGAAAGAGAGAAATATTACTCATACAATAGATCTT
GAGCTGAAGTGAGTAGAGAGTAGAGAAAAAGAGTAGGGTAGATTAGCATT
GcagtagactagcaaactagtctgttaaatAATAATTTCAGAGAGGGTGG
GAACAAAAAGGCGGCGGGCgattgctagaataggagctgtgTAAGAGAac
aagcaaaagttggtgagagatTGCTGATTAACATTAACCTTTTAGccccc
ttgccgccgacaaaatttcttcctaggCTTCTAAATGCAggacaaaatct
tttaaaaacacTTCAAAGTGCTTCTCTTAAACCACTAGCAAGGAAAAATT
AGTCAGTTTTTTTACTACACTTTCAACATTTtctaagccttcggatgttc
ttaactattttgagtttcaagcctgaaaatgttctaaaTTTCCTTAGAAA
TCGGATGTATTTGAGTCCGCAaggtcttaaaatgttcttaacttgttttt
accttgttagccatcgaagccttatgttcttagaTGGCCGGAGGGAGCAC
TGACCTTGGCGGTCGACGGGGACGTTCCCGCTgaggaccctgtcagatat
aaatgtttggtaaatttagaACCCTATCAGAATGAAAAATTTTCCTGCGA
AAACTGAACAAAAGTAGACCAAGTTCCTTGAGCagacaaaaatttaaatt
tcttatcAATTCCTACTCTataaattgtcaaaaataacCAAACGTCGACC
TTGTCAGATAAACATTTTCATAGTTAGAAAATTTGGGACCCTaccagata
tcttcagagcctaaaaaagggatcCTTCCCAGCGGCACACCCTTTACCcg
attttgcctaagtaaccccccACCCCGGGCTTATGTAGTTTGCTCTTAAA
AAGTAACGTGCAACACAAAAgctaaaaatgaccaaaaataggCAAAATGG
ACCCACTTTAGAAGGTGTAACTTTTGATcaaacaaaaatctaaaaatcta
aaaacgcAGTGTAAAAGTGAgtgtaggagttaggtaagcgtagtaAGAAa
atttgtcggcggcaagggctgaaagcccTTAATGGTTAATATGTTAatgt
taatcagcagcctctcgcCAACTTTTGATCGCTCTCCTgagcagctccta
ttctagcaaacgcccgccgcctttatgttcccgccctctgacatgattaa
ttaacagactagtttgctagtctataccatcaggaaagttttaagtttcA
GAAGAGTTTCtgatagaaaaaatcttttttttcatcttcattttcaaaat
ctttagaTTCTGAAACGTTGAAATCATCCACttcatactatcttttcaac
gaggaaCTACTTTTAATCATTTCTCCTTCAAGAGCAATCTATCAAAATTT
GCGGACTGTCAATTCTCATAGAACAGATTTCATATGACATTTTGGGAGAA
TTCACGAtgaaaaagcttaaaacttTCGATAAAATGCAGTTTTGTAGTAA
CCTTAAATTTTGCTTAAACGTCACAgagaaatttcttcattttttcctac
acgtttttttcttattagaacaaattatataagaacatatggcttcgatg
gctaaaatattaagaacattttaaggcttataactcaaaaagctaagaac
atccgaaggcaaATATGTAACATAAATCAtcaccaaaaaaacaaacaaat
ctcttcaatttcatttcaggtTACGGTCATTCAGTTCCACAAACCATCAG
CGGACAGATCTTTTGTATGTTATACGCGTGTATCGGAATCCCATTGAACT
TAACCATGTTTCAAGCTATCGGGGAGCGTATGGGCGTCTTTATGTCGTAC
ATATTACGTCGCACGAAACGTTGTCTAGGTATGAAGAGTACAGAAGTCAA
CTTGGTTCATCTAGTGGCATTTGGAGTCATGATATGGTTTGTTTTTCAAT
GTTTGGGTGCAGCTGTATTCAGTTACTACGAGACTTGGTCCTTTTTCAGG
TCCTTATATTATTTCTTTGTTACCTTGACAACCATCGGGTTTGGAGACTT
GGTAGCGTTACAGgaaatcaagaaaaaacatCCAGATAATAACGGATATT
ATAATCAAAACTTATACGTTGCTTTGACAATGATTTTGATATACATTGGA
TTAACAATAGCATCTTCTGTTATAAACTTATTGGTTATGCGTTTGATGGA
ATTACAACAGCCGAAAAGACGGCGTAGAAACGTGTCATGGAAAAATGgta
caaaatgtaaacattgcaaatCGAATAAAGCGACAGCATGTGTAGAAGAA
GTAGCGAACAGTGTTATGGAGAATCATTCCGTGATGATTTTACAAAACTT
TGAAGAGGAATTAGAATTCACGTCCTACAGACAGGTACATGAAACGGAAG
ATGGTGGAACACCTCCTtattaaaatattcttttgttaCTATTCATCATT
ATTCCCAAAACTTGAGCCTTACTAACAGGGGGTTTCAGGAGGTATCCGAT
TCCGTCATTCCGTCATTCCGTCAATTTTCCCTGATTTCCTTCCGTCAAAC
CGACAAATGAGAGCCGTAAGTCCgcgaatttctttttaatttaagttttt
tgtTGACAATTCCTTTTTTTAACTTCCACTTAAATTTCGACCAATATAAT
GCCAAATTCTATATTTCAGGACAAAAATTACCCAGCTGAATTCCACAATT
AGATCCAAATTTTTAGCAAATCCGTTATTCCACTAAAAACAGTAAATTCT
CCGCCAACCGTGAAACCCTTTAATCTCTTACCAGAGATTAATTGAGGTTT
TATAAGGACTTTGTAAGAATACAATTCTGATTTTGATATCATCTTAATTA
AAACAGGAATACCTGATATTTGAAACATAAGTTGTGTGGCTGTAGTTTAT
CAAGAGATAAATATCAGATAAAAAAGTGGAAAGGTCTAATGTCTGAAAAT
TGCACTATTTTTGCAAAAGAACCTTAGAGTAGCAGCAAAATGAGTTCCGG
CAAAAGCTTTTTTTTCCGGCttgttttttacaaattttctgatATTAAAG
TACCTCAAAATTACCTTTTTCTTGGTACCATGACCCAGATCAAAGAAAGT
TtgatattttgtattttgagcTTGGTTTTCTTTTCATCTTGTCTGTgttt
agagaaaaaatttattatgattgaaaaaagaaatatcaaaatatttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000067-exon-sc0000001-1491911889:1488001..1488217 | TCONS_00000067-exon-sc0000001-1491911889:1488001..1488217 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1510915933:1488001..1488217 | TCONS_00000067-exon-sc0000001-1510915933:1488001..1488217 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1575043694:1488001..1488217 | TCONS_00000067-exon-sc0000001-1575043694:1488001..1488217 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1491911889:1488647..1489079 | TCONS_00000067-exon-sc0000001-1491911889:1488647..1489079 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1510915933:1488647..1489079 | TCONS_00000067-exon-sc0000001-1510915933:1488647..1489079 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1575043694:1488647..1489079 | TCONS_00000067-exon-sc0000001-1575043694:1488647..1489079 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1491911889:1492220..1493698 | TCONS_00000067-exon-sc0000001-1491911889:1492220..1493698 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1510915933:1492220..1493698 | TCONS_00000067-exon-sc0000001-1510915933:1492220..1493698 | Clytia hemisphaerica | exon |
| TCONS_00000067-exon-sc0000001-1575043694:1492220..1493698 | TCONS_00000067-exon-sc0000001-1575043694:1492220..1493698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1488001..1493698 + |
Blast
BLAST of TCONS_00000067 vs. Swiss-Prot (Human)
Match: KCNK9 (Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.518e-67 Identity = 115/264 (43.56%), Postives = 163/264 (61.74%), Query Frame = 2
Query: 365 LEQQNARTLLLITSTVIYMLLGAAVFSALEYDEHIRQKSKYRNIYNLLQKKYNMTIEDVEELANYLHKRRSLYHSLDPWSFAGSVYFTSVTITTIGYGHSVPQTISGQIFCMLYACIGIPLNLTMFQAIGERMGVFMSYILRRTKRCLGMKSTEVNLVHLVAFGVMIWFVFQCLGAAVFSYYETWSFFRSLYYFFVTLTTIGFGDLVALQEIKKKHPDNNGYYNQNLYVALTMILIYIGLTIASSVINLLVMRLMELQQPKRRR 1156
+++QN RTL LI T Y+L+GAAVF ALE D +R++ K + ++ KYN++ ED +L + + + W FAGS YF ITTIGYGH+ P T +G+ FCM YA +GIPL L MFQ++GERM F+ Y+L+R K+C GM++T+V++ ++V G C+GAA FS E WSFF + YY F+TLTTIGFGD VALQ + LYVA + + I +GLT+ + +NL+V+R + + RR
Sbjct: 1 MKRQNVRTLSLIVCTFTYLLVGAAVFDALESDHEMREEEKLKAEEIRIKGKYNISSEDYRQLELVILQSEPHRAGVQ-WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCGMRNTDVSMENMVTVGFFSCMGTLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYVALQ-------TKGALQKKPLYVAFSFMYILVGLTVIGAFLNLVVLRFLTMNSEDERR 256
The following BLAST results are available for this feature:
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