TCONS_00000061 (transcript) - C. hemisphaerica

Overview
Name
Unique NameTCONS_00000061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000061 ID=TCONS_00000061|Name=|organism=Clytia hemisphaerica|type=transcript|length=981bp
CTTCGTTTGAGCTTCGTTTTAATTCGTttcatgaaacaatttgaaacgaa
aaaattgaaacaatatttggagaCGCTCCCTAATATTATGTATTTTTGAT
ATGGTACTCTATAGAAGGAAATGAAATTTATACTAATAATTTGTacataa
aaaaattactaaatacACCTGAAGTCCATTTGCTTTAAGTCAACCATAGA
TAATAAATGTCAGCAAAACTATTTCGTTGTACCTATCTCATGTTTTTTTT
CGTTGATCAGATCCATTCCTCGTTTCCAACGTTGTCGATTGACATTCGAA
TCCTTCGAGGTTTTATCGACTGTCGTGGAGGCTTTAGTGGTTGCGATGTA
TCTATTTCCTCGACTCGTATCATCTAAATCGATTGCATCGCTTAATTTTC
TCGTATAAGATGATGATATTTTTCTTCGTTGATTTTTCGGTGGCGGGCTT
GTTCCTCGGGATGAAGTTGTTGAAACTTTACGTGAATTTTCCTGGCGTGT
TCGGGAGGCGGGGGCGGTCACTTTAGAGGATTGCAATGTCTTTGGTTTAC
CAGTGTTGCTTGTTGGTAATTTCGGTTCAACaattttgattcttttgttA
GATCTATTTCCATCTCTCTTCTCATGTTTCGAACGTGATAAAAGTTTTCC
GAACTTACTAATGACAAATGAGAAACAACCATAGCTCTTAAAGCCATCCA
TCTTTAACATTACATAACTCTGAAATAAGCTATAAACTATTTACagatga
agctctttaattctACATCATACTATTCCATACGCTCCgttatttgataa
tatttaaAGTCACCGTTGaaaagaaactctcataaacgatgctttactat
tcgataggttcctatatttgatgaaaatcaaattcctcttgaaaatcgaa
taattGAGCATCAATTGTATTTGCAATTTTTAAGttacttttatgtcaaa
tatcgTGACTGATCACAATTTCCAAGTCAGG
Run BLAST on NCBI

transcript from alignment at sc0000001:1408673..1409653+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000061 ID=TCONS_00000061|Name=TCONS_00000061|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at sc0000001:1408673..1409653+ (Clytia hemisphaerica)
CTTCGTTTGAGCTTCGTTTTAATTCGTttcatgaaacaatttgaaacgaa aaaattgaaacaatatttggagaCGCTCCCTAATATTATGTATTTTTGAT ATGGTACTCTATAGAAGGAAATGAAATTTATACTAATAATTTGTacataa aaaaattactaaatacACCTGAAGTCCATTTGCTTTAAGTCAACCATAGA TAATAAATGTCAGCAAAACTATTTCGTTGTACCTATCTCATGTTTTTTTT CGTTGATCAGATCCATTCCTCGTTTCCAACGTTGTCGATTGACATTCGAA TCCTTCGAGGTTTTATCGACTGTCGTGGAGGCTTTAGTGGTTGCGATGTA TCTATTTCCTCGACTCGTATCATCTAAATCGATTGCATCGCTTAATTTTC TCGTATAAGATGATGATATTTTTCTTCGTTGATTTTTCGGTGGCGGGCTT GTTCCTCGGGATGAAGTTGTTGAAACTTTACGTGAATTTTCCTGGCGTGT TCGGGAGGCGGGGGCGGTCACTTTAGAGGATTGCAATGTCTTTGGTTTAC CAGTGTTGCTTGTTGGTAATTTCGGTTCAACaattttgattcttttgttA GATCTATTTCCATCTCTCTTCTCATGTTTCGAACGTGATAAAAGTTTTCC GAACTTACTAATGACAAATGAGAAACAACCATAGCTCTTAAAGCCATCCA TCTTTAACATTACATAACTCTGAAATAAGCTATAAACTATTTACagatga agctctttaattctACATCATACTATTCCATACGCTCCgttatttgataa tatttaaAGTCACCGTTGaaaagaaactctcataaacgatgctttactat tcgataggttcctatatttgatgaaaatcaaattcctcttgaaaatcgaa taattGAGCATCAATTGTATTTGCAATTTTTAAGttacttttatgtcaaa tatcgTGACTGATCACAATTTCCAAGTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000030XLOC_000030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000061-exon-sc0000001-1491911889:1408673..1409653TCONS_00000061-exon-sc0000001-1491911889:1408673..1409653Clytia hemisphaericaexon
TCONS_00000061-exon-sc0000001-1510915933:1408673..1409653TCONS_00000061-exon-sc0000001-1510915933:1408673..1409653Clytia hemisphaericaexon
TCONS_00000061-exon-sc0000001-1575043694:1408673..1409653TCONS_00000061-exon-sc0000001-1575043694:1408673..1409653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1408673..1409653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184961 0.313698 0.0539166 0.0512193 1.1775 1.32778 0.145101 0.152898 0.195707 0.32412 0.486726 0.273873 3.65833 3.69584 0.260948 0.166588 18.8595 15.7359 35.0268 32.6671 7.96617 7.84075 5.36439 4.58253 2.76253 2.97664 1.01133 0.865585 1.34504 0.779523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php