TCONS_00000056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000056
Unique NameTCONS_00000056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000056 ID=TCONS_00000056|Name=TCONS_00000056|organism=Clytia hemisphaerica|type=transcript|length=1882bp
agacaaacgtatttattactttttctaaagaacgcgtcatccctattgtt
tagaaataaccaatcagttaagcatcttgtaaaaactccagctcatccca
aattTTGATGAACCTATTATGTAACTCTGGTCCCACTGATCTTGCTAAAT
AGGTCACTTGAAACGCAGTTTTAactaaatttgttaaaaatagCCATAAA
AACAACAATCCTGGTTCCTATTACGCAATGCAATATACTACAATGTGTTA
TTTTTGTTCTCCCTTTTTACAAGAAATAGATCATTTCTTAGGACAGACTT
TGGACCCTCATCAAAAAACATGCAAAACTTTCGATTTATGAATTTGCACA
AACAGCATTACACATtataaatacttttttgaagcaCATAGTCTTATTTT
AGATCAACATGACAGTCGGTGGATGGAATGGAGTTTCTACTTTGGATTAA
TGAGCTGTTTcagatttgaaataattataaatatcaaagttttgaaatat
tgtggtacagtcaactctctctaattcgaacctctataattcgaatattt
tttaattcaagaGAGTCAATCGTAGAACTAATTGAAAGGTTTTTGGATGG
TACAACTTGATCGATGCTAACAAAGTTAAACAAACTTAATTACCTTAATC
GTAATCTGAGCATACTTTCCTTATCACCAAAGCAGCAGCCAATCAAAATG
TCCACAACGTCGTCACAGTTCACACTTTCAATTGTTGACTACCTCGTCTT
TGCGATCGTCTTGGTGGCGTCTAGTGTCATTGGGATCTATTTCGCTCGTA
AAGGCAAACCCGCATCATCACCATCATCGAAAGAGAAGAACGAACGACTA
AACATCCTGAGTAAACAAGGAACGAAAGATACAAACGAAAATGGTGATAA
TCAGAAGGAGACTGATGAATATTTAGTCGGTGGACGAAACATGCATTGGT
TTCCACTTTCAATTTCCTTTATGGCAACATACATCTCTGCAAGCTCTTTA
TTGGGTATTCCAGCGGAGATTTACACATATggttttcaatatattgtctc
TTGTGGTGCACTGTTTGTCTCAACCTTTTTCACTTGGTACATTTTCATAC
CGATCTTCTACAGACTGAAAATTGTGTGTGCGAATGAGTATTTAGAATTA
CGATTTTCAAGAGGTGTTCGAAATATCGGCTGCATCATCATGTCAATTTA
CATGTTGATTAGCTTGTCGATCGGTTTATATGGGCCAGCCCTGGCATTTG
AAGCAGTTGGCGGTGTTCCACTTTACGTATCTATTACAGTGACTggtctg
gtctgtattttctaCACAACGATAGGAGGTATCAAAGCAGTTGTATGGAC
AGATTGTTTTCAAGCATTCGTAATGATCGCAGGTCTACTCGTCGTTATCA
TCATCGGGGTGGAAGAGGTCGGGAGTATTgggaagatttttgaaaaagca
cAGCAAGGTGAAAGAATACATATTCTAAACTTTGATCCAGACCCCCGTAT
TCGAAACACTTTTTGGTCACTAATCTTTGGTGTTGGGTTTACCATCTTAC
CAGCATGGGCTGTCGGTCAACAATCTGTTCAACGCTTCCAGGCTGCCAAA
TCAATGAAAGAGGCTAGACTAGCATTATTATGGAACTTCCCATCAATGTT
GTTTATCTCATTGCTGGCAATGTTAGCAGGTTTGGTGATATATGCAGTGA
ATGCAGATTGTGATGTTGGAGTTTATGGGTTGCATCTTGTGGACAGGAAT
GACCAGGTATTACCTTACTTCATCATGCAGAAGTTGGGACATTTGACCGG
AATTCCCGGGTTGTTCATGGCAGTGCTCTTTAGCAGTGCTTTGAGGTTTC
AGGTGCTTCCGTTTAAAACATTACGTCGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000001:1388720..1403424+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000056 ID=TCONS_00000056|Name=TCONS_00000056|organism=Clytia hemisphaerica|type=transcript|length=14705bp|location=Sequence derived from alignment at sc0000001:1388720..1403424+ (Clytia hemisphaerica)
agacaaacgtatttattactttttctaaagaacgcgtcatccctattgtt
tagaaataaccaatcagttaagcatcttgtaaaaactccagctcatccca
aattTTGATGAACCTATTATGTAACTCTGGTCCCACTGATCTTGCTAAAT
AGGTCACTTGAAACGCAGTTTTAactaaatttgttaaaaatagCCATAAA
AACAACAATCCTGGTTCCTATTACGCAATGCAATATACTACAATGTGTTA
TTTTTGTTCTCCCTTTTTACAAGAAATAGATCATTTCTTAGGACAGACTT
TGGACCCTCATCAAAAAACATGCAAAACTTTCGATTTATGAATTTGCACA
AACAGCATTACACATtataaatacttttttgaagcaCATAGTCTTATTTT
AGATCAACATGACAGTCGGTGGATGGAATGGAGTTTCTACTTTGGATTAA
TGAGCTGTTTcagatttgaaataattataaatatcaaagttttgaaatat
tgtggtacagtcaactctctctaattcgaacctctataattcgaatattt
tttaattcaagaGAGTCAATCGTAGAACTAATTGAAAGGTTTTTGGATGG
TACAACTTGATCGATGCTAACAAAGTTAAACAAACTTAATTACCTTAATC
GTAATCTGAGCATACTTTCCTTATCACCAAAGCAGCAGCCAATCAAAATG
TCCACAACGTCGTCACAGTTCACACTTTCAATTGTTGACTACCTCGTCTT
TGCGATCGTCTTGGTGGCGTCTAGTGTCATTGGGATCTATTTCGCTCGTA
AAGGCAAACCCGCATCATCACCATCATCGAAAGAGAAGAACGAACGACTA
AACATCCTGAGTAAACAAGGAACGAAAGGTATTTtggaaaatacaatttt
tttttataagaaccagtaaattttggatCAGACTGGGCTGtttctaattt
ttcaggcttattAAGATGCTTATTAgtgtttctttacttaaaatccTTTA
ATATCTGTACTCAGATTATTATAGcatcttataaaattattcttatgaaa
aagcgTGTACCTTAATTTCCTTAATTTTCGCGCGCTTTTTATTTTCGCGC
CTCTAATTTTCGCGCCTTTCATTTTCGTGCAGCTCGTAAAATAGAATATT
CGCGCatcctttaattttcgcgcattttGCAATTTCTGGGATACTTTCTG
AGTGTTTTTGACGATTTTAAGTGAGTTTTACTCACTTTCAGTGTGTATTC
AAGCTAGATTTTACATCCCAGATGCATATTTACCATGAATCGAGGTccta
ttttattaaaaaagtcaTAAGATGAGATTTCCACACGTTCAGAACGATTA
CTAGTTCGCGcaccctttaattttcgcgcggCCAAGTGCGCGAAAATAGG
CCTATTACAAATAACCTATTTACATAACTACTATTTACCCTACAACAGAT
GTTGTGGGGGCCCCTCTCCCGATGCATAGTTAACTTGAAATATCATCTCG
TTTATTTCaatattcattaaactcacaATACTACTATGAAATTTACTGTA
ATTTTCAGAATCCCCTCTGCTAGAACCCTAGGTTTCTGAGCCAATTAAAT
TTACTGGTTGAACTGTTAAATGAGACAGGAGTGTGCCCGAGCAATCTGTC
CAAGAAGTGCTGACTTAAGCGTGGAGTAGCCATGATTAGAAAAGTTCAGA
ATATGACGTAGCCGGTAGGCGACCGTAGTGCAAAAGTAAAGCATCCGGCT
ACGGGTTCACTACCCGGCAAAGTCATACCAAAGTGCTTCTAAGTTCTTAG
TACAACATTGTACTATATAGCTATCATAAGTGGAACTTTCAAGTCACCTC
CGAATGTGGGTACAGACTTTATCTTGAGCGCCGCCTATTTCTATTATTAG
ATACAAACGAAAATGGTGATAATCAGAAGGAGACTGATGAATATTTAGTC
GGTGGACGAAACATGCATTGGTTTCCACTTTCAATTTCCTTTATGGCAAC
ATACATCTCTGCAAGCTCTTTATTGGGTATTCCAGCGGAGATTTACACAT
ATggttttcaatatattgtctcTTGTGGTGCACTGTTTGTCTCAACCTTT
TTCACTTGGTACATTTTCATACCGATCTTCTACAGACTGAAAATTGTGTG
TGCGAATGAGGTAGGTTGTCAATATATTTAGCTGACAGTCATTGAAATTC
GTTCAACctagtatctacggctaatttcaaaatgccgtagagggtctgtt
gtcattgtttttctcattatttgagatttttcaaacctacCGCtccgatg
gagtgttggtgagagaggggagatgATGAGAGAAGTGTGGCtatttaaaa
atcatacttcatcgcagaggtttctgtatgggaatttttttatcaaacag
ataATGCGCACAGAGTGGTTCTACAAAGCGATAAAAAGTGAAATAGGTAG
ATCGCTAGTCACGTGATTTACCCCAGGACAAGGGATCAAATCGAGCCTTT
TAccattcatgatatgcaccattgcaatgttttctaacattacatcacgg
acctaACAGCTgatgattggttgcaagtgacgtattgactgattttacgc
cactaacaaccaatcagctgttgggtctatgGTGTGATGTCGAAGACAAT
GCAGTTATGCGCTTCATTGATACTCCCCCTGAACAATATACTTTCTAACC
TTATGtacaattttttcttgaaaagcttATTGTTAGATTAGCCAACTTTC
TCATtggcgagattatgtatcggagatattctactgctacggttgcgggg
ctgcccatgcgggtcgtcaccaaaggcgacatgtcgttgtctactttgct
ctgtacgggaaaacaccaaaacaccgtataagcaaagtcaacataatgcc
gtacgtcaaatatcgaacttgctttcacccgccattacttgcattactcg
ccatttccctcgccgctttaaccgtagccgtagagaattccagatacata
atctcgctattatGAATATCTATACCCCAgttctttataaaaaataaaaa
atccgcaatttcatcaattttttgaagaaataatttcaaatgGGAGACAA
ACCTCAATTATGAAATGGTCAACCTCGTTCCCATTGCATTATTAAACATC
ATCTACTCTGATGGCGCTAGAATATATTCTCTAATGTCAATCGGTAATGt
gaataaagcctgggatacacggggacgaggctGTGAAATAAATTGTTTAA
TACTTCTTTAAGAAACTTCTTACTTAATTTTACTTAATCAGTATTTAGAA
TTACGATTTTCAAGAGGTGTTCGAAATATCGGCTGCATCATCATGTCAAT
TTACATGGTAGGTAAATTTAGAATGTTCTCTGGctgaaattgaaataatt
agTCTGTATCGCAGACTTTTATAGATATATTTCCTctaagaaactctttt
cgctTAGAAGATTcatgagcagaagcctataaAGTAATTGAATATCAAAT
GTCTACTCCAAACAACTCTTCTCATTCACAGACCCACTAGAACCgcttcc
cactggaaaagttgGCCAAAAAATATCATCCTCAGTGGAAAGTTATACTC
CAAATtgtgtccccactgaaaataataaaataaaccaatcctaaAATACA
TGTAGTAATATGTTATTTTTCCCATCGCGATCCCCACTGAAATTTCTAAA
TCCCCGAATATCAATTCTCATCGAgcttcagtccgttattttcaccccac
tttctgaaaaatcctactgggtctgtgagaagggggtgtctccCAATCTG
TGTCAGAGACAAGCAATAATTTTCTTGCCTGTAGGATTAAAATTAATGAC
CAAAGGGAATATGAATTTCCTTTGCTTCTATTGGATAAGGCTAGTGAAAT
TCAATATATTCTTGACGAACGTTTTTTCGGCCAAATTCTGCAGTGTGAAA
TATTTGGCAGCAGTGTTTTCCCaggttttttaatattttttgcacaaaaa
tcCTTTGTCTTTTATTTCGGTGGAGGTATACTGCCAAAATATAGATGGTA
TTCGTTTTCTTTTCATATTGTTCAGTTGATTAGCTTGTCGATCGGTTTAT
ATGGGCCAGCCCTGGCATTTGAAGCAGGTACGAAATATTTGATGTGTTTA
AGAGTTTTCCATAGTGAATATAGATAAAAGATTGCTTTCTCGGGATTTCC
AAACCAATCAAAATTATGTGCCCTGGCGATCAAAGCGTCCCGCTTAATCC
ATCGCCAATCAAATTTATACAAAACACTGGATTTAGCAAACTTTTTTTCA
TCGccaattttcaggattttcagaCTTCTGTCATATACTTTTTCTTCTCA
TTTTCAGTTGGCGGTGTTCCACTTTACGTATCTATTACAGTGACTggtct
ggtctgtattttctaCACAACGATAGTAAGTTTTCTTCGTTGTTTAAAGG
TGGGATAGTGGtctttatttacaaaaagtcACTGGGCGAAAAGTGGAATT
TCCAGTATAATGCAAGATCccaaaaaaaagatcaaaaaagacctggaaat
gttatattttaaaaactttccggtctaatggaaattgttttaatcttttc
aaaaattagaaaatcagaCTCCCAAAAACTTTGGAATGTGACTTTTATTT
CAGGAACATTTCGTGAAAcatgatattttcaagtttttttaaatatttgt
aACACCAATAcgctttcttagaaaaatccctaggCAAGTGATGATGTTTT
CCCTGGCGAAAAACCATCCTGGTAAACTCCAAGGAAGTTATGCCAAAGTC
TGTCACAAAAGTTACCAAGTTTTACCCGACGAAAAGTTTTACCCAACTAA
GTTTTCCTCTTTAAGGGTATTAAAACATCAAATGTAATAAAAACGTGTGA
ATTTTTCTATTAACAGGGAGGTATCAAAGCAGTTGTATGGACAGATTGTT
TTCAAGCATTCGTAATGATCGCAGGTCTACTCGTCGTTATCATCATCGGG
GTGGAAGAGGTCGGGAGTATTgggaagatttttgaaaaagcacAGCAAGG
TGAAAGAATACATATTCTAAAGTAGGTAGCTctcagtgaattttttttaa
gtctAGTGAGTCTTTCCATGAACTTCTAACGACTGGACGGAGAACtcatt
gtttcaaaaacaaagcgCGGCTTTTTCCTTTTTGCAGAGAGCGCGTTGCc
gccaaaaaattgaattttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATACTGTAA
CATTgttgtcaaactaaaaataatgaatttttgttCTATTTTACAGGATG
GCTATAAAAAGATTGGAAACAGATTGGGCGAAACATTGTCCAAGCTTTAA
CGTAGCTACGGACTACAAACGTAAACCATGCTGGAGATAACATTTTAAGA
GATGCAACCATTTGAATCAATCGGCAAATCTATGtatttatttggaaaat
ttgtcgTTGAACCCGTTTGATGacgttttgaaaatattaacattttaatg
ccattttttaaaagtttaaatggATGCAATCTATAATCAAACAATAAAGT
TCAGATCTACAGCATCATGTGTCATGCCCTTATAAGAGACACATGAACCG
TTACAGTAAACATCAATAGTTGACAACAAAAGACTAACTGGGGTGGACAA
ATGATGTGTGGTTATTTTTCTGGTATTTGTGGTATATATACATTGATAGA
TTTCTGATGGAATTACagtaattttttacattttgctttcaaattttctg
CTCTTTAGAATGAATTTGCACACTGtatatactttaatcggattaatttt
cgcgtgattaaatttcgcgatttcgcgaatttttgccattttcgcgaaat
taaaactcgcatacacgcgtgagattcctggttcgcgaaattaaatccaa
aacttttaaaattgtatttttggcggagaaactagttccaagtctccatt
tttggcaaaaaatgcctattttcagctgttttctggcttattcgcgaaat
taaatccacgcaaaatatttcaaaactctgactcacgaaattaaatccag
aaaatttcgcgatttttttagctcgcgaaatttaatctcacaaaatttaa
tccggttaaagtaatAACTGATTCCCTCACTGATACAAGAaattatgatt
ttatttttcatatatatTTTATCAGACCTTATattaatttcttaaaattt
acttcaattttttgaagtttttaaatgAGCATTTGCAGGATATTTTGCAC
TTAGACctcaatttgaaaattatttaatgNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCTTTCTTAACCGAAATACCACctcaaaattaaagtaaaatttaaatA
CATTCAGCAGAATGTCAGCACTGTTGTTTTGGACtccaatatttttataa
agcttttaaaattAATCTTTGTTTCAGTCTAATAAATTAAAATCATCCTA
ATTAcagtagaaaaaagttttcattaccAAAAATAACATaagtaaaattc
aatcaaaattgttgaaataaaatttctaaataaaaattgatttttgccaC
TACATTCCAGAGTCACTGCCAATTTATGTTCACGTAAAATTTTGGTCATT
GTGCAGCTATGACCTTACCATCGCTGGGAGTGTCAATATTGTCAgcaaac
aaaataacaaaaaagctgACCATCATTCCATTGCAGTCTTTCANTCGTAA
ATACATGTAATTCATCTTTCTTGACATCAGCATCTCTCATCTGCTCCTCA
TACAAATCCCGTTCAGTGAATAAATGTTAGTCGTGGATATAACCATTTTC
TGTTGTTGACACCACAGAATGAGAatcctaaaaatgtaaaaaaaatgtac
tctttaaaaaaagcaattttgacAAGGTATAtattatttaattttctatA
CATTTGAGTGAAGGACAGTGAAGGTAGTAGGGTAGTAGTTCTTCGAAAGC
TTATTTGCTAAATTGTTTCCTGTACTATCAGTAATGTATAAGAGGGAAGA
TttgtgaaaatcaaaaaaaatttaatgattttagtTAGAGAGTCGAAGAA
ACCTCATCAGCCTGTCAGCATTCTCATTCAACATACTTTTCCCTCTCTTT
TCGtagaaaaaacaaataaatattcaaCTCCTACCTTTATATTTGGATGT
GAATCTGTATTTAAAAGATTGCCAATATATATTGtcgatattttgatgaa
aaagcttgtaaaagtcaaaaatttccacTTCACACTGATGGTGGGAGAGT
GCTTTCgaaaaagattgtttttttgcCCGACATTCATACAAATCACAACA
ACTGGGTTATCGAGACCTCGACTTTTTCTGATGCAATATCACGTGAACAG
AACGTCATCATCCTATTTATTTGAAACAATGAAAGAGGTGTATCTCCTTT
GAAGTCAATTCAAATGATATGAAATAAgattagaaaatttttcactaaaa
aaccCTTGGGTAGTGCAACGTGGAGACAGGTTGGACAAGCGAATCAAAAG
AATAAGGTTTAGTAGCAATAGTAGCAAGtaccttaaccctttaagtgccg
atgtcgtatatatacgacatgggctatataggagggcgaagccctcctgt
aatgcccagtttgatttAGAAATCGTTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTCA
TTCTAGATCagaagatataagcccttaaagtttgaactagcaatttttaa
aaaaaaacttagaaaaaaggaccctggcactcaaagggttaacaaAAACC
GGGACTTTTATTCCGTTTCTTGGTGAGTTCCACAACTTTgatgacttttg
aaaaatagaagccttccAAGTGTATTGAcgcaattttaattttttcggta
ctgcaggagcttcgaaagctaaaagtgacgtcaaaaaatcgaatttttag
ATAGATAGTCTCccaacattcgaaaaagtcgcaaagtggaaaagacgtta
attgcgtagaaaaaaacgCTGGTAACGTCTAGTATAGGTTACAAGTACCT
CACCAATAACCGGGACTTTTTATTCCGTTTCTTGGTGAGTTacactttga
tgatttttggtaaaaagaagcctttcaagtgtatTGACGCAAATTCCGAA
GACCTACGCTccaaactttcgaaaaagtcgcaaagtggaaaaAAGCCATT
ACCAGAGGCGTATTTAGGGTAGGTCAAGTAGGTCAAGTGACATAGTTccg
agaaattgaaaaacatgaaaaattgtGAAACAGGCAATCTTATTCCTCTT
AGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTATTTAGagacttttatttt
gataatccgAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACT
TAGCAACACCCTTTTTGACCTCTTTCGCCCTAGCAAATCGGGATCATATT
ATTACCGAGCTCAACTTCTCTAAAAATTCACGTGTAATGACCTTGAGTAA
CTGCTTATATATCTGGCCGCCTTTCATTTAGAGATAATATGAAGCCGAGA
GACATAGCTAGAAATGGCTGAAACGACCtagcaaaatttctaaaaaaatc
ggGGTAATAGCTATGAGGCTACGTACAGCTTCTCTGTCgagtttattaaa
aaacaatacTCAATTCACATTTCCTAGCTTATCTCTTTCACAGTTTTTAT
TGAGAGAAGCTCAGTTTCCAGAGCTGAAATTTGCTGAAGCGACCCAGTTA
ACTTTTgagtttgatctgaaattttgtgaaagtcCAAGTAACTTTCACGT
CTTAACTGTGATTTTATAGCTTTAATTCTTATGGATCGATTGCTAAGAAT
TGATCGTCATGATATTAAGCATCAGCACCAGTTGTCACTGCTTTAAGTTG
AACtaataatgtttattttttaacaaaaatgaagcatttttcaaagtctt
ttaaaactttgtttttttcctGCTTTTTGGTTGTTGTTGTGAGCGGAAAT
GAATATATTAGAATGATTTGACACCATTTAATTACcttatattcaattca
aaacataaaaaataattttggggaTATAAAGGCCTATAAACTCAACTATA
ACTCATCTATATTTCTTGTTTTGGGGAAACGAACATTGCTCCACATCAGT
ATctatttttttaccacaagcggTTAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTCCAGCTTT
GATCCAGACCCCCGTATTCGAAACACTTTTTGGTCACTAATCTTTGGTGT
TGGGTTTACCATCTTACCAGCATGGGCTGTCGGTCAACAATCTGTTCAAC
GCTTCCAGGCTGCCAAATCAATGAAAGAGGCTAGACTGTAAGTTTTAAGA
ACAAGAGGTTCTTGTATGGAGGCAACCGGGGGACGCCCTGTATCCTAGGC
TTTATTTGCGTTACTGATAGACGAATACCCCGGTGTTGGTTGATGCGAGG
ACCCTCTCTAAAAGGGGGAACTTCTCAATACACCCCTATATCACAGCCCT
GGccgaacttttttcctcaatggggataaaaattcctactgaaatcccaa
tggggatagaaattctattgttccaaggtttaaAATACAGTAAGATGGTT
TTAGAGTCCAAtatttaaacattgaatttcgagtggggatgaaatcaatt
AATcgggactgattgcgcctccataaaCAGCTTCCCGTTCGTTCGAAGCA
AAAACATCCTAAATCATCGACCAGTGGAAAGTCGTTGTCAGATTGCAGTG
GTTCTGATTAACCGTGATTCCTTTCGaatgtgaaatggcctatgatATAT
CATGTCAATGGTTTGAAAAAAGCGACCGTAGCATGGAGGAAGAGCATCCA
ACTACAGTGTGCAAGGCTGTGGGTTCGATCACCAGCTGAATCATACCAAC
AAAGATTCACAAAatagtacttgatgcctctctgcttgatgctcagcaat
taaagagacGAATCAAGGGTAAATGAAGAAACCCAGGGAACAGAGTGGTG
CCCTCCTCTACCTTCGGGTAGGAAGTTTgggaaaagggagccttcgggtc
gccctcgactgcggttgCAAACTTTACTTGCTTTATTACTTATGGTTTCA
AAATCAAGAAAGCAAATGAAATCTTATTTTGGATTTTGTAATCTTTTGTA
TTCCACAACAAGACAGGGTATTTCAATCAAAGAGCTTATAATACGCAGGT
AACGCGGCTGGTATAGAGGTATCTGTATTGTAGTAGCAGAGACCTTAACA
CATCATGACACAAACCGCTTAAGGCGTCTGTGCAAACTCATCATTCACAA
TTTTGTAGTACCATTGTATAAGTCCTTAAGTTGAAATTACAGATCTTTAT
TTAGAGCATTATTATGGAACTTCCCATCAATGTTGTTTATCTCATTGCTG
GCAATGTTAGCAGGTTTGGTGATATATGCAGTGAATGCAGATTGTGATGT
TGGAGTTTATGGGTTGCATCTTGTGGACAGGAATGACCAGGtagaaaaga
aatgtttttgaaaactgTTAACCACACATTTATCATATTACTTTTCATAC
TGAATgatgataaaattgaaaatgaaagaagaaaacatagaaaattatAT
CCTTTGGTGCTAGAATCATCTTTGGTACAGAGATACTttaaaccattgag
tttaaatcccgaagggctagagtagaatctctaacctttccaaGGCAAGA
CAAAGTGAAGCCACTCATTTCCCACCCAGAGCGCGCCTAGAatgcgccgt
aatcatgacaacggattgtatctagcggctcctttatttttgaggactgc
attttttgaatctAGCGATagtttgtatgaaaaccacgcgcgggcgttct
ggatgggaaataagtgattTCAGGGTAggtagaaaacctggcccacctct
ctggcccgggccatatggcctacccttggcccaccctttggcccaccttc
aaacattttttcccCCGATTTTATTCTCGGACAACCAGGTTATAATGATA
TGTGTGCGTCGGTATGCGCTATATTTCATTATGATTTCATCATAAAGCGC
GTTGGCGTTATTGCATCAGTCGTTTTACGACAAACAATTGGTCAAATCTT
CTAAATGCTCTAAGAattaaacgcttttttttataagaatagtgtacttt
ggatgagaggGTCAATTATTCTTaggaaagtgccaaaattgagggtgaaa
tattcttaacgtaggTCTTGTCTATCTGACCAAGGGCTAAGTCCCTTAAA
ATTTTTAAGCTATGTCAACAGAAGTCAGCCTAATGGTAGCACAATGTGCT
CATGCACTAGGGATCCCAAGTTCGAGTCGGGTTCGGGTCAACGTCAAAGT
TTTTCGCCATGTTTTGAaactttatgtttttttgggtgaagattccgaaa
aaaggggaccgaagtcctgaaaagttgaagaGCGCTACAGGGGTTGTTGG
CACCCGTACAGGACTTAACCAGACCCTCTCCCGGGGGTCCCCTTAATCTA
TGTCAGGTGTATAGCTGTATAAAATGCagactttttagttttttttgttt
atttcagtctcgttgttttttaaaaatgccagaaaaaccAAAGTCCAACC
TCAGAATtggtttgcagattttcagaatgataagaatcaaatctttttta
gagttgcaaggtgggccaaagggtaggccaagggtaggccatatggcccg
ggccagagaggtgggccaggttttctaccTACCCGTGATTTCATTTCTCT
ttcaggagtctcgagtctagccgtctggcttggaagtcaatgctTTAAGC
CCTCTTGATTTCagaattgaaagcaaaattgCGGACTACTTAGCTCTATC
AAGTGGCTAgattgtcaaaatattttgggtgttttgatttttgtttttgt
tcgcAGGCGAACAATATAGGGATTAGGATTTTGTACCAGAAAAAGTGTAA
TATCTTATGGACATTTTATGTCAATCAACAATTGAAAAAAGATCTGAAGA
TCTGGTAATAGCAGCCTTGTTTACTTAGCTAAATGCTTATGCTATACATA
GAAATCACCGTAATCCAGGGGGGATGGTACCCCAGTGAAGAATAATATTC
TGCTACAAGTCGATTCATCTCAGAAAGTCTGATTGACTAATTTCTACTTA
CAATGCAGGTATTACCTTACTTCATCATGCAGAAGTTGGGACATTTGACC
GGAATTCCCGGGTTGTTCATGGCAGTGCTCTTTAGCAGTGCTTTGAGGTA
AGTTTTCttcgaattttttcttttcaaattaataTTGAATCTTTTGTTAT
AAAAATCTTTGCCACTATGTATTTCATTTTATACGGAAGTACCCAAAAGT
TTAGTAGTTCTCTATCAAACTGAGATCAATGCGCACATATACACGTGTTG
GCACTAAATGGTAAGTCCTTGATATTGATATCGTTGGGTACCCAAAAGAG
AACCGGAcgtttgccactaattttgaatttaaacaataaaactatGGCAA
ACACCCGGGTTATTTCAGGTTTCAGGTGCTTCCGTTTAAAACATTACGTC
GTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000030XLOC_000030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000056-exon-sc0000001-1491911889:1388720..1389597TCONS_00000056-exon-sc0000001-1491911889:1388720..1389597Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1388720..1389597TCONS_00000056-exon-sc0000001-1510915933:1388720..1389597Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1388720..1389597TCONS_00000056-exon-sc0000001-1575043694:1388720..1389597Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1390620..1390879TCONS_00000056-exon-sc0000001-1491911889:1390620..1390879Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1390620..1390879TCONS_00000056-exon-sc0000001-1510915933:1390620..1390879Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1390620..1390879TCONS_00000056-exon-sc0000001-1575043694:1390620..1390879Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1392011..1392076TCONS_00000056-exon-sc0000001-1491911889:1392011..1392076Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1392011..1392076TCONS_00000056-exon-sc0000001-1510915933:1392011..1392076Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1392011..1392076TCONS_00000056-exon-sc0000001-1575043694:1392011..1392076Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1392795..1392846TCONS_00000056-exon-sc0000001-1491911889:1392795..1392846Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1392795..1392846TCONS_00000056-exon-sc0000001-1510915933:1392795..1392846Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1392795..1392846TCONS_00000056-exon-sc0000001-1575043694:1392795..1392846Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1393077..1393144TCONS_00000056-exon-sc0000001-1491911889:1393077..1393144Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1393077..1393144TCONS_00000056-exon-sc0000001-1510915933:1393077..1393144Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1393077..1393144TCONS_00000056-exon-sc0000001-1575043694:1393077..1393144Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1393636..1393790TCONS_00000056-exon-sc0000001-1491911889:1393636..1393790Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1393636..1393790TCONS_00000056-exon-sc0000001-1510915933:1393636..1393790Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1393636..1393790TCONS_00000056-exon-sc0000001-1575043694:1393636..1393790Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1400066..1400206TCONS_00000056-exon-sc0000001-1491911889:1400066..1400206Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1400066..1400206TCONS_00000056-exon-sc0000001-1510915933:1400066..1400206Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1400066..1400206TCONS_00000056-exon-sc0000001-1575043694:1400066..1400206Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1401224..1401359TCONS_00000056-exon-sc0000001-1491911889:1401224..1401359Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1401224..1401359TCONS_00000056-exon-sc0000001-1510915933:1401224..1401359Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1401224..1401359TCONS_00000056-exon-sc0000001-1575043694:1401224..1401359Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1403028..1403116TCONS_00000056-exon-sc0000001-1491911889:1403028..1403116Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1403028..1403116TCONS_00000056-exon-sc0000001-1510915933:1403028..1403116Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1403028..1403116TCONS_00000056-exon-sc0000001-1575043694:1403028..1403116Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1491911889:1403388..1403424TCONS_00000056-exon-sc0000001-1491911889:1403388..1403424Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1510915933:1403388..1403424TCONS_00000056-exon-sc0000001-1510915933:1403388..1403424Clytia hemisphaericaexon
TCONS_00000056-exon-sc0000001-1575043694:1403388..1403424TCONS_00000056-exon-sc0000001-1575043694:1403388..1403424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1388720..1403424 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.8025 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.02684	0	0.051923	0	0	0	0.540314	0.673622	0	0	0.530838	0	0.262891	0	0.0766827	0	0	0	0	0	0.189365	9.09181e-10	0	0	1.54788	2.81175e-10	0	1.8025	0.636502	1.63311
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Expect = 1.74e-64 / Id = 37.10SequenceSC5AC
Match NameE-valueIdentityDescription
SC5AC1.742e-6437.10Sodium-coupled monocarboxylate transporter 2 OS=Ho... [more]
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