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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000056 ID=TCONS_00000056|Name=TCONS_00000056|organism=Clytia hemisphaerica|type=transcript|length=1882bpRun BLAST on NCBI transcript from alignment at sc0000001:1388720..1403424+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000056 ID=TCONS_00000056|Name=TCONS_00000056|organism=Clytia hemisphaerica|type=transcript|length=14705bp|location=Sequence derived from alignment at sc0000001:1388720..1403424+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000056 vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 1.742e-64 Identity = 138/372 (37.10%), Postives = 209/372 (56.18%), Query Frame = 2
Query: 728 SIVDYLVFAIVLVASSVIGIYFARKGKPASSPSSKEKNERLNILSKQGTKDTNENGDNQKETDEYLVGGRNMHWFPLSISFMATYISASSLLGIPAEIYTYGFQYIVSCGALFVSTFFTWYIFIPIFYRLKIVCANEYLELRFSRGVRNIGCXXXXXXXXXXXXXXXXGPALAFEAVGGVPLYVSITVTGLVCIFYTTIGGIKAVVWTDCFQAFVMIAXXXXXXXXXXXXXXXXXKIFEKAQQGERIHILNFDPDPRIRNTFWSLIFGVGFTILPAWAVGQQSVQRFQAAKSMKEARLALLWNFPSMLFISLLAMLAGLVIYAVNADCDVGVYGLHLVDRNDQVLPYFIMQKLGHLTGIPGLFMAVLFSSAL 1843
++ DY+VFA + SS IG++FA K ER + + E+LVGGR M + P+ +S A+++SA ++LG P+E+Y +G ++V A T +F+P+FYR I EYL+LRF++ VR +I + ++ + +Y PALA V G L+ S+ TG+VC FY T+GG+KAVVWTD FQ VMI G L V+I G G + E++ G R+HI +FD DP R+TFW++ G FT L + V Q ++QR + K+ K A+LAL +N + I + A+ +GL++Y+ DCD G ++ DQ++PYF+M+ + G+PGLF+A FS L
Sbjct: 7 AVWDYVVFAALFFISSGIGVFFAIK-------------ER-----------------KKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSG--IISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTL 346 The following BLAST results are available for this feature:
BLAST of TCONS_00000056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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